Microbiology

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  1. 2020
  2. Published

    Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies

    Marino, N. D., Pinilla Redondo, Rafael, Csörgő, B. & Bondy-Denomy, J., 2020, In: Nature Methods. 17, 5, p. 471-479 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Jagten på den gode opgave: Identifikation af kriterier og implementering af peer feedback i praksis

    Mark Jensen, L., Burmølle, Mette, Johannsen, B. F., Bruun, Jesper & Ellegaard, M., 2020, In: Dansk universitetspædagogisk tidsskrift [online]. 15, 28, p. 16-30 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age

    Morin, A., McKennan, C. G., Pedersen, C. T., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Schoos, A. M., Naughton, K. A., Thorsen, Jonathan Jan Ilve, Mortensen, M. S., Vercelli, D., Trivedi, Urvish, Sørensen, Søren Johannes, Bisgaard, H., Nicolae, D. L., Bønnelykke, Klaus & Ober, C., 2020, In: Journal of Allergy and Clinical Immunology. 146, 6, p. 1358-1366

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    AgNO3 sterilizes grains of barley (Hordeum vulgare) without inhibiting germination - a necessary tool for plant–microbiome research

    Munkager, V., Vestergård, M., Priemé, Anders, Altenburger, A., de Visser, E., Johansen, Jesper Liengaard & Ekelund, Flemming, 2020, In: Plants. 9, 3, 16 p., 372.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Community-intrinsic properties enhance keratin degradation from bacterial consortia

    Nasipuri, P., Herschend, J., Brejnrod, A. D., Madsen, Jonas Stenløkke, Espersen, R., Svensson, B., Burmølle, Mette, Jacquiod, S. & Sørensen, Søren Johannes, 2020, In: PLoS ONE. 15, 1, 26 p., e0228108.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The environmental contribution to the dissemination of carbapenem and (fluoro)quinolone resistance genes by discharged and reused wastewater effluents: The role of cellular and extracellular DNA

    Oliveira, M., Nunes, M., Barreto Crespo, M. T. & Silva, A. F., 2020, In: Water Research. 182, 13 p., 116011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Plasmids, CRISPR-Cas and Anti-CRIPSRs: Uncovering the secret lives of mobile genetic elements

    Pinilla Redondo, Rafael, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 217 p.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements

    Pinilla Redondo, Rafael, Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, Søren Johannes, Fineran, P. C. & Bondy-Denomy, J., 2020, In: Nature Communications. 11, 11 p., 5652.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Ecological succession in the vaginal microbiota during pregnancy and birth

    Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci

    Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Unravelling interspecies interactions across heterogeneities in complex biofilm communities

    Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Enrichment of endophytic Actinobacteria in roots and rhizomes of Miscanthus × giganteus plants exposed to diclofenac and sulfamethoxazole

    Sauvêtre, A., Węgrzyn, A., Yang, L., Vestergaard, G., Miksch, K., Schröder, P. & Radl, V., 2020, In: Environmental Science and Pollution Research. 27, 11, p. 11892-11904 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

    Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Low Turnover of Soil Bacterial rRNA at Low Temperatures

    Schostag, M. D., Albers, C. N., Jacobsen, C. S. & Priemé, Anders, 2020, In: Frontiers in Microbiology. 11, 5 p., 962.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The T-shirt microbiome is distinct between individuals and shaped by washing and fabric type

    Sterndorff, E. B., Russel, J., Jakobsen, J., Mortensen, M. S., Gori, K., Herschend, J. & Burmølle, Mette, 2020, In: Environmental Research. 185, 9 p., 109449.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma

    Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Blaser, M. J., Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Christensen, E. D., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brix, S., Mortensen, M. S., Brejnrod, A., Vestergaard, G., Trivedi, Urvish, Sørensen, Søren Johannes & Bisgaard, H., 2020, In: Science Translational Medicine. 12, 569, 14 p., eaax9929.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Interspecific interactions in dual-species biofilms of soil bacteria: effects of fertilization practices

    Sun, X., Cai, P., Sørensen, Søren Johannes, Mortimer, M., Gao, C., Huang, Q., Wang, Y., Lin, X., Wu, Y., Zhu, D. & Chen, R., 2020, In: Journal of Soils and Sediments. 20, 3, p. 1494-1501 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum

    Tan, D., Hansen, Mads Frederik, de Carvalho, L. N., Røder, Henriette Lyng, Burmølle, Mette, Middelboe, Mathias & Svenningsen, Sine Lo, 2020, In: The ISME Journal. 14, 7, p. 1731-1742 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Persistence and progression of staphylococcal infection in the presence of public goods

    Trivedi, Urvish, Fell, C., Madsen, Jonas Stenløkke, Everett, J., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 2020, In: npj Biofilms and Microbiomes. 6, 5 p., 55.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm

    Vandeplassche, E., Sass, A., Ostyn, L., Burmølle, Mette, Kragh, K. N., Bjarnsholt, Thomas, Coenye, T. & Crabbé, A., 2020, In: Biofilm. 2, 9 p., 100031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The evolution of virulence in Pseudomonas aeruginosa during chronic wound infection

    Vanderwoude, J., Fleming, D., Azimi, S., Trivedi, Urvish, Rumbaugh, K. P. & Diggle, S. P., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1937, 10 p., 20202272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites

    Yim, B., Baumann, A., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Zühlke, S., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Horticulture Research. 7, 16 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Mixed-species biofilms in the food industry: current knowledge and novel control strategies

    Yuan, L., Hansen, Mads Frederik, Røder, Henriette Lyng, Wang, N., Burmølle, Mette & He, G., 2020, In: Critical Reviews in Food Science and Nutrition. 60, 13, p. 2277-2293

    Research output: Contribution to journal › Review › Research › peer-review

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