Microbiology

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  1. Published

    Risk factors for and pregnancy outcomes after SARS-CoV-2 in pregnancy according to disease severity: A nationwide cohort study with validation of the SARS-CoV-2 diagnosis

    Aabakke, A. J. M., Petersen, T. G., Wøjdemann, K., Ibsen, M. H., Jonsdottir, F., Rønneberg, E., Andersen, C. S., Hammer, A., Clausen, T. D., Milbak, J., Burmester, L., Zethner, R., Lindved, B., Thorsen-Meyer, A., Khalil, M. R., Henriksen, B., Jønsson, L., Andersen, L. L. T., Karlsen, K. K., Pedersen, M. L. & 19 others, Hedermann, G., Vestgaard, M., Thisted, D., Fallesen, A. N., Johansson, J. N., Møller, D. C., Dubietyte, G., Andersson, C. B., Farlie, R., Skaarup Knudsen, A., Hansen, L., Hvidman, L., Sørensen, A. N., Rathcke, S. L., Rubin, K. H., Petersen, L. K., Jørgensen, J. S., Krebs, Lone & Bliddal, M., 2023, In: Acta Obstetricia et Gynecologica Scandinavica. 102, 3, p. 282–293 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Comparison of aerobic and anaerobic [3H]leucine incorporation assays for determining pollution-induced bacterial community tolerance in copper-polluted, irrigated soils

    Aaen, K. N., Holm, Peter Engelund, Priemé, Anders, Hung, N. N. & Brandt, Kristian Koefoed, 2011, In: Environmental Toxicology and Chemistry. 30, 3, p. 588-595 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Bacteria in the first void urine of urethritis patients and healthy controls analysed by 454 high throughput senquencing

    Ahrens, P., Frølund, M., Abu Al-Soud, W., Wikström, A., Lidbrink, P., Cullberg, M., Sørensen, Søren Johannes & Jensen, J. S., 2012.

    Research output: Contribution to conference › Poster › Research

  6. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    The Biological Time Machine - Biological responses to multiple environmental and climatic changes: Environment and Stress, Ph.d. symposium at KVL October 2006

    Albert, K., Ro-Poulsen, Helge, N. Mikkelsen, T., Michelsen, Anders, Beier, C., Jonasson, S. E., Ambus, Per Lennart, Schmidt, Inger Kappel, Holmstrup, M., Priemé, Anders & Christensen, Søren, 2006.

    Research output: Contribution to conference › Conference abstract for conference › Research

  8. Published

    Ambient UV-B radiation reduces PSII performance and net photosynthesis in high Arctic Salix arctica

    Albert, K. R., Mikkelsen, T. N., Ro-Poulsen, Helge, Arndal, M. F. & Michelsen, Anders, 2011, In: Environmental and Experimental Botany. 73, p. 10-18 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium

    Albrechtsen, Anders, Korneliussen, Thorfinn Sand, Moltke, Ida, van Overseem Hansen, T., Nielsen, Finn Cilius & Nielsen, Rasmus, 2009, In: Genetic Epidemiology. 33, 3, p. 266-274

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A Bayesian multilocus association method: allowing for higher-order interaction in association studies

    Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Microsatellite analysis of the natterjack toad (Bufo calamita) in Denmark: populations are islands in a fragmented landscape

    Allentoft, Morten Erik, Siegismund, Hans Redlef, Briggs, L. & Andersen, L. W., 2009, In: Conservation Genetics. 10, 1, p. 15-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Analysis of cell-type-specific gene expression during mouse spermatogenesis

    Almstrup, Kristian, Nielsen, J. E., Hansen, M. A., Tanaka, M., Skakkebæk, Niels Erik & Leffers, H., Jun 2004, In: Biology of Reproduction. 70, 6, p. 1751-1761 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Combined use of Bacteriophage K and a novel Bacteriophage to reduce Staphylococcus aureus biofilm formation

    Alves, D. R., Gaudion, A., Bean, J. E., Esteban, P. P., Arnot, T. C., Harper, D. R., Kot, Witold, Hansen, Lars Hestbjerg, Enright, M. C. & Jenkins, A. T. A., 2014, In: Applied and Environmental Microbiology. 80, 21, p. 6694-6703 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    High-throughput screening alternative to crystal violet biofilm assay combining fluorescence quantification and imaging

    Amador Hierro, Cristina Isabel, Stannius, R. O., Røder, Henriette Lyng & Burmølle, Mette, 2021, In: Journal of Microbiological Methods. 190, 5 p., 106343.

    Research output: Contribution to journal › Letter › Research › peer-review

  16. Published

    Combined effects of drought, temperature and CO2 on GHG emissions from temperate shrub-land

    Ambus, Per Lennart, Priemé, Anders, S. Carter, M., Albert, K., S. Larsen, K., Andersson, M. & Beier, C., 2007.

    Research output: Contribution to conference › Conference abstract for conference › Research

  17. Published

    Denitrification and N2O losses in a heath-land under changing climate conditions

    Ambus, Per Lennart, Priemé, Anders, S. Carter, M., Albert, K., S. Larsen, K., Andersson, M. & Beier, C., 2007.

    Research output: Contribution to conference › Conference abstract for conference › Research

  18. Published

    Assessment of CH4 and N2O fluxes in a Danish beech (Fagus sylvatica) forest and an adjacent N-fertilised barley (Hordeum vulgare) field: effects of sewage sludge amendments

    Ambus, Per Lennart, Jensen, J. M., Priemé, Anders, Pilegaard, K. & Kjøller, A., 2001, In: Nutrient Cycling in Agroecosystems. 60, 1-3, p. 15-21 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A combined DNA-microsatellite and isozyme analysis of the population structure of the harbour porpoise in Danish waters and west Greenland

    Andersen, L. W., Holm, L. E., Siegismund, Hans Redlef, Clausen, B., Kinze, C. C. & Loeschcke, V., 1997, In: Heredity. 78, 3, p. 270-276 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis

    Andersen, Sandra Breum, Hansen, Lars Hestbjerg, Sapountzis, P., Sørensen, Søren Johannes & Boomsma, Jacobus J., 2013, In: Molecular Ecology. 22, 16, p. 4307-4321 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Rodskud hos orkideer

    Andersen, T. F. & Johansen, B. B., 1986, In: Orkideer. p. 161-163

    Research output: Contribution to journal › Journal article › Communication

  22. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    To assemble or not to resemble - A validated Comparative Metatranscriptomics Workflow (CoMW)

    Anwar, M. Z., Lanzen, A., Bang-Andreasen, T. & Jacobsen, C. S., 2019, In: GigaScience. 8, 8, 10 p., giz096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Extreme genetic differences among populations of Gazella granti, Grant's gazelle in Kenya

    Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, In: Heredity. 76 ( Pt 5), p. 465-75 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Population genetics of Kenyan impalas–consequences for conservation

    Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, Molecular Genetic Approaches  in Conser­vation. Smith, T. B. & Wayne, R. K. (eds.). Oxford: Oxford University Press, p. 399-412

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  27. Published

    Optical dating of perennially frozen deposits associated with preserved ancient plant and animal DNA in north-central Siberia

    Arnold, L. J., Roberts, R. G., Macphee, R. D. E., Willerslev, Eske, Tikhonov, A. N. & Brock, F., 2008, In: Quaternary Geochronology. 3, 1-2, p. 114-136 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Unexpected diversity among small-scale sample replicates of defined plant root compartments

    Attia, S., Russel, J., Mortensen, M. S., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Patterns and Processes of the Microbiome Assembly at a Small-Scale of the Plant Root Microenvironments: Study Case on the Wheat and Faba Bean Root Systems

    Attia, S. M. H., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 132 p.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    The effect of ancient DNA damage on inferences of demographic histories

    Axelsson, E., Willerslev, Eske, Gilbert, M Thomas P & Nielsen, Rasmus, 2008, In: Molecular Biology and Evolution. 25, 10, p. 2181-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Impact of long-term agricultural management practices on soil prokaryotic communities

    Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A taxonomic revision of the genus Hystrix (Triticeae, Poaceae)

    Baden, C., Frederiksen, S. E. & Seberg, Ole, 1997, In: Nordic Journal of Botany. 17, 5, p. 449-467 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law

    Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, Søren Johannes, Riber, Leise, Fickers, P. & Delvigne, F., 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Persistence Mechanisms of Conjugative Plasmids

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, Horizontal Gene Transfer: Genomes in Flux. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 73-102 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  36. Published

    In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. R. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 4, p. 1112-1117

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry

    Bahl, M. I., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2004, In: FEMS Microbiology Letters. 232, 1, p. 45-49

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains: Genomes in Flux

    Bahl, M. I., Oregaard, G., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2009, Horizontal Gene Transfer. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 257-268 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  39. Published

    All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant

    Bahl, M. I., Burmølle, Mette, Meisner, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Plasmid. 62, 2, p. 134-139 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats

    Bahl, M. I., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Licht, T. R., 2004, In: Applied and Environmental Microbiology. 70, 2, p. 758-764

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

    Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, Joseph, Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design

    Balbín-Suárez, A., Lucas, M., Vetterlein, D., Sørensen, Søren Johannes, Winkelmann, T., Smalla, K. & Jacquiod, S., 2020, In: FEMS Microbiology Ecology. 96, 12, 12 p., fiaa211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Prevalence estimates of antibodies towards foot-and-mouth disease virus in small ruminants in Uganda

    Balinda, S. N., Tjørnehøj, K., Muwanika, V. B., Sangula, A. K., Mwiine, F. N., Ayebazibwe, C., Masembe, C., Siegismund, Hans Redlef & Alexandersen, S., 2009, In: Transboundary and Emerging Diseases. 56, 9-10, p. 362-371 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Flygtninge er mennesker i krise.

    Bang-Achton, I., Gollin, J., Mide, A., Kjøller, Annelise Helene & Andersen, L., 12 Mar 1986, In: Sygeplejersken. 86, 11, p. 18 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Potential microbial contamination during sampling of permafrost soil assessed by tracers

    Bang-Andreasen, T., Schostag, M. D., Priemé, Anders, Elberling, Bo & Jacobsen, C. S., 2017, In: Scientific Reports. 7, 11 p., 43338.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil

    Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil

    Bang-Andreasen, T., Anwar, M. Z., Lanzén, A., Kjøller, Rasmus, Rønn, Regin, Ekelund, Flemming & Jacobsen, C. S., 2020, In: FEMS Microbiology Ecology. 96, 3, 13 p., fiaa016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

    Barfod, K. K., Roggenbuck, M., Hansen, Lars Hestbjerg, Schjørring, S., Larsen, S. T., Sørensen, Søren Johannes & Krogfelt, K. A., 2013, In: B M C Microbiology. 13, 12 p., 303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D

    Barfod, K. K., Roggenbuck, M., Al-Shuweli, S., Fakih, D., Sørensen, Søren Johannes & Sørensen, G. L., Mar 2017, In: Heliyon. 3, 3, 19 p., e00262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain

    Bartels, Mette Damkjær, Hansen, Lars Hestbjerg, Boye, K., Sørensen, Søren Johannes & Westh, Henrik T., 2011, In: P L o S One. 6, 1, 5 p., e16193.

    Research output: Contribution to journal › Journal article › Research › peer-review

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