Microbiology

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  1. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Catch Crop Residues Stimulate N2O Emissions During Spring, Without Affecting the Genetic Potential for Nitrite and N2O Reduction

    Duan, Y., Hallin, S., Jones, C. M., Priemé, Anders, Labouriau, R. & Petersen, S. O., 2018, In: Frontiers in Microbiology. 9, p. 1-13 2629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    DGGE and Pyrosequencing characterization of microbial community and methane-metabolizing microorganisms in livestock slurry surface crusts

    Duan, Y. (., Abu Al-Soud, W., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2012.

    Research output: Contribution to conference › Poster › Research

  4. Published

    Broad phylogenomic sampling improves resolution of the animal tree of life

    Dunn, C. W., Hejnol, A., Matus, D. Q., Pang, K., Browne, W. E., Smith, S. A., Seaver, E., Rouse, G. W., Obst, M., Edgecombe, G. D., Sørensen, Martin Vinther, Haddock, S. H. D., Schmidt-Rhaesa, A., Okuso, A., Kristensen, Reinhardt Møbjerg, Wheeler, W. C., Martindale, M. Q. & Giribet, G., 2008, In: Nature. 452, p. 745-750

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater

    Dunon, V., Holmsgaard, P. N., Dealtry, S., Lavigne, R., Sørensen, Søren Johannes, Smalla, K., Top, E. M. & Springael, D., 2022, In: Applied and Environmental Microbiology. 88, 3, 17 p., e01648-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Bacterial mitosis: partitioning protein ParA oscillates in spiral-shaped structures and positions plasmids at mid-cell

    Ebersbach, G., Gerdes, K. & Charbon, G. E., 1 Apr 2004, In: Molecular Microbiology. 52, 2, p. 385-98 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Partition-associated incompatibility caused by random assortment of pure plasmid clusters

    Ebersbach, G., Sherratt, D. J., Gerdes, K. & Charbon, G. E., 1 Jun 2005, In: Molecular Microbiology. 56, 6, p. 1430-40 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Primary cilia and aberrant cell signaling in epithelial ovarian cancer

    Egeberg, D. L., Lethan, M., Manguso, R., Schneider, L., Awan, A., Jørgensen, T. S., Byskov, A. G., Pedersen, Lotte Bang & Christensen, Søren Tvorup, 2012, In: Cilia. 1, 15, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The genome of the social amoeba Dictyostelium discoideum.

    Eichinger, L., Pachebat, J. A., Glöckner, G., Rajandream, M-A., Sucgang, R., Berriman, M., Song, J., Olsen, R., Szafranski, K., Xu, Q., Tunggal, B., Kummerfeld, S., Madera, M., Konfortov, B. A., Rivero, F., Bankier, A. T., Lehmann, R., Hamlin, N., Davies, R., Gaudet, P. & 77 others, Fey, P., Pilcher, K., Chen, G., Saunders, D., Sodergren, E., Davis, P., Kerhornou, A., Nie, X., Hall, N., Anjard, C., Hemphill, L., Bason, N., Farbrother, P., Desany, B., Just, E., Morio, T., Rost, R., Churcher, C., Cooper, J., Haydock, S., van Driessche, N., Cronin, A., Goodhead, I., Muzny, D., Mourier, T., Pain, A., Lu, M., Harper, D., Lindsay, R., Hauser, H., James, K., Quiles, M., Madan Babu, M., Saito, T., Buchrieser, C., Wardroper, A., Felder, M., Thangavelu, M., Johnson, D., Knights, A., Loulseged, H., Mungall, K., Oliver, K., Price, C., Quail, M. A., Urushihara, H., Hernandez, J., Rabbinowitsch, E., Steffen, D., Sanders, M., Ma, J., Kohara, Y., Sharp, S., Simmonds, M., Spiegler, S., Tivey, A., Sugano, S., White, B., Walker, D., Woodward, J., Winckler, T., Tanaka, Y., Shaulsky, G., Schleicher, M., Weinstock, G., Rosenthal, A., Cox, E. C., Chisholm, R. L., Gibbs, R., Loomis, W. F., Platzer, M., Kay, R. R., Williams, J., Dear, P. H., Noegel, A. A., Barrell, B. & Kuspa, A., 2005, In: Nature. 435, 7038, p. 43-57 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Anbragte børn i Danmark: en deskriptiv analyse

    Ejrnæs, Mette, Ejrnæs, N. M. & Frederiksen, S. E., 2008, Institut for Sociologi, Socialt Arbejde og Organisation, Aalborg Universitet, 81 p.

    Research output: Working paper › Research

  12. Published

    Microbiomes associated with infective stages of root-knot and lesion nematodes in soil

    Elhadyl, A., Giné, A., Topalovic, O., Jacquiod, S. J. A., Sørensen, Søren Johannes, Javier Sorribas, F. & Heuer, H., 4 May 2017, In: PLoS ONE. 12, 5, 17 p., e0177145.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Investigation of the fate and effects of acetyl cedrene on Capitella teleta and sediment bacterial community

    Ellegaard-Jensen, L., Selck, H., Priemé, Anders, Salvito, D. & Forbes, V. E., 2010, In: Ecotoxicology. 19, 6, p. 1046-1058 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters

    Ellekilde, M., Krych, Lukasz, Hansen, Camilla Hartmann Friis, Hufeldt, M. R., Dahl, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Vogensen, Finn Kvist, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2014, In: Research in Veterinary Science. 96, 2, p. 241-250 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Measurement of the length of fungal hyphae by the membrane filter technique as a method for comparing fungal occurrence in cultivated field soils

    Elmholt, S. & Kjøller, Annelise Helene, 1987, In: Soil Biology and Biochemistry. 19, 6, p. 679-682 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Comparison of the occurrence of the saprophytic soil fungi in two differently cultivated field soils

    Elmholt, S. & Kjøller, Annelise Helene, 1 Jan 1989, In: Biological Agriculture and Horticulture. 6, 3, p. 229-239 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Biocontrol of Bacterial Wilt Disease Through Complex Interaction Between Tomato Plant, Antagonists, the Indigenous Rhizosphere Microbiota, and Ralstonia solanacearum

    Elsayed, T. R., Jacquiod, S., Nour, E. H., Sørensen, Søren Johannes & Smalla, K., 2020, In: Frontiers in Microbiology. 10, 15 p., 2835.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Virus-host and CRISPR dynamics in archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia

    Emerson, J. B., Andrade, K., Thomas, B. C., Norman, A., Allen, E. E., Heidelberg, K. B. & Banfield, J. F., 2013, In: Archaea. 2013, 12 p., 370871.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The genetic origins of the Andaman Islanders

    Endicott, P., Gilbert, M Thomas P, Stringer, C., Lalueza-Fox, C., Willerslev, Eske, Hansen, Anders Johannes & Cooper, A., 2002, In: American Journal of Human Genetics. 72, 1, p. 178-84 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Herbivory and dominance shifts among exotic and congeneric native plant species during plant community establishment

    Engelkes, T., Meisner, A., Morriën, E., Kostenko, O., van der Putten, W. H. & Macel, M., 2016, In: Oecologia. 180, 2, p. 507-517 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities

    Fang, Chao, Sun, X., Fan, F., Zhang, X., Wang, O., Zheng, Haotian, Peng, Z., Luo, X., CHEN, Ao, Zhang, W., Drmanac, R., Peters, B. A., Song, Z. & Kristiansen, Karsten, 2023, In: Cell Reports Methods. 3, 3, 16 p., 100437.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields

    Farias, P., Santo, C. E., Branco, R., Francisco, R., Santos, S., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Morais, P. V., 2015, In: Applied and Environmental Microbiology. 81, 7, p. 2534-2543 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity

    Farias, P., Francisco, R., Maccario, Lorrie, Herschend, J., Piedade, A. P., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Frontiers in Microbiology. 12, 15 p., 718963.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The nitrogenase gene pool in surface waters of the global ocean is dominated by genes of non-cyanobacteria

    Farnelid, H., Andersson, A., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Hagström & Riemann, Lasse, 2010.

    Research output: Contribution to conference › Poster › Research

  25. Published

    Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria

    Farnelid, H., Andersson, A. F., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Steward, G. F., Hagström, Å. & Riemann, Lasse, 2011, In: P L o S One. 6, 4, p. e19223 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Short and Long-Term Controls on Active Layer and Permafrost Carbon Turnover Across the Arctic

    Faucherre, S., Jørgensen, C. J., Blok, D., Weiss, N., Siewert, M. B., Bang-Andreasen, T., Hugelius, G., Kuhry, P. & Elberling, Bo, 2018, In: Journal of Geophysical Research: Biogeosciences. 123, 2, p. 372-390 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Adaptation of root growth to increased ambient temperature requires auxin and ethylene coordination in Arabidopsis

    Fei, Q., Wei, S., Zhou, Z., Gao, H. & Li, X., 2017, In: Plant Cell Reports. 36, 9, p. 1507-1518 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Crystal structure of ATVORF273, a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus

    Felisberto-Rodrigues, C., Blangy, S., Goulet, A., Vestergaard, G. A., Cambillau, C., Garrett, Roger Antony & Ortiz-Lombardía, M., 2012, In: P L o S One. 7, 10, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas

    Fernandez-Gnecco, G., Smalla, K., Maccario, Lorrie, Sørensen, Søren Johannes, Barbieri, P., Consolo, V. F., Covacevich, F. & Babin, D., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Conjugative plasmids inhibit extracellular electron transfer in Geobacter sulfurreducens

    Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2023, In: Frontiers in Microbiology. 14, 12 p., 1150091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Microbial Interactions in Electroactive Biofilms for Environmental Engineering Applications: A Role for Nonexoelectrogens

    Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2022, In: Environmental Science & Technology. 56, 22, p. 15273-15279 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Quantitative metagenomic analyses based on average genome size normalization

    Frank, J. A. & Sørensen, Søren Johannes, 2011, In: Applied and Environmental Microbiology. 77, 7, p. 2513-2521 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Probing Barophilic Microbial Communities for Novel Proteolytic Enzymes

    Frank, J. A., Hansen, M. A. & Sørensen, Søren Johannes, May 2010.

    Research output: Contribution to conference › Poster › Research

  34. Published

    Planternes udvikling: Fra mosser til dækfrøede

    Frederiksen, S., Rasmussen, Finn N. & Friis, Ib, 2002, 2. ed. København: Gad. 122 p.

    Research output: Book/Report › Book › Education

  35. Published

    Kormofyternes Udvikling

    Frederiksen, S., Friis, Ib & Rasmussen, Finn N., 1986, Botanisk Laboratorium, københavns Universitet. 74 p.

    Research output: Book/Report › Compendium/lecture notes › Education

  36. Published

    Organismernes Diversitet - Planter

    Frederiksen, S. & Rasmussen, Finn N., 2008, 4. ed. Biologisk Institut, Københavns Universitet: Museum Tusculanum. 78 p.

    Research output: Book/Report › Compendium/lecture notes › Education

  37. Published

    Dansk flora

    Frederiksen, S. E. (ed.), Rasmussen, Finn N. (ed.) & Seberg, Ole (ed.), 2006, København: Gyldendal. 701 p.

    Research output: Book/Report › Book › Research

  38. Published

    EREMOPYRUM (Ledeb.) Jaub. & Spach.

    Frederiksen, S. E., 2007, Flora of North America North of Mexico: Volume 24: Magnoliophyta: Commelinidae (in part): Poaceae, part 1. Barkworth, M. E., Capels, K. M., Long, S. & Anderton, L. K. (eds.). New York, N.Y.: Oxford University Press, Vol. 24. p. 252-256

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  39. Published

    Pollinium development and number in the Ochidaceae

    Freudenstein, J. V. & Rasmussen, Finn N., 1996, In: American Journal of Botany. p. 813-824 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    The bacterial microbiota in first-void urine from men with and without idiopathic urethritis

    Frølund, M., Wikström, A., Lidbrink, P., Abu Al-Soud, W., Larsen, N., Harder, C. B., Sørensen, Søren Johannes, Jensen, J. S. & Ahrens, P., 2018, In: PLoS ONE. 13, 7, p. 1-19 e0201380.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): A comparison of RPB1, RPB2, and ITS phylogenies

    Frøslev, Tobias Guldberg, Matheny, P. B. & Hibbett, D. S., 2005, In: Molecular Phylogenetics and Evolution. 37, 2, p. 602-618 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Compatibility of X-ray computed tomography with plant gene expression, rhizosphere bacterial communities and enzyme activities

    Ganther, M., Yim, B., Ibrahim, Z., Bienert, M. D., Lippold, E., Maccario, Lorrie, Sørensen, Søren Johannes, Bienert, G. P., Vetterlein, D., Heintz-Buschart, A., Blagodatskaya, E., Smalla, K. & Tarkka, M. T., 2020, In: Journal of Experimental Botany. 71, 18, p. 5603-5614 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity

    Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Archaeal CRISPR-based immune systems: exchangeable functional modules

    Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  45. Published

    En rig natur i fremtidens samfund

    Geldmann, Jonas & Skouw-Rasmussen, M., 2008, In: Aktuel Naturvidenskab. 1, p. 34-35 2 p.

    Research output: Contribution to journal › Journal article › Research

  46. Published

    Bacterial mitotic machineries

    Gerdes, K., Møller-Jensen, J., Ebersbach, G., Kruse, T., Nordström, K. & Charbon, G. E., 6 Feb 2004, In: Cell. 116, 3, p. 359-66 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Evolutionary and biomedical insights from the rhesus macaque genome

    Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., Batzer, M. A., Bustamante, C. D., Eichler, E. E., Hahn, M. W., Hardison, R. C., Makova, K. D., Miller, W., Milosavljevic, A., Palermo, R. E., Siepel, A. & 31 others, Sikela, J. M., Attaway, T., Bell, S., Bernard, K. E., Buhay, C. J., Chandrabose, M. N., Dao, M., Davis, C., Delehaunty, K. D., Ding, Y., Dinh, H. H., Dugan-Rocha, S., Fulton, L. A., Gabisi, R. A., Garner, T. T., Godfrey, J., Hawes, A. C., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Kirkness, E. F., Cree, A., Fowler, R. G., Lee, S., Lewis, L. R., Nielsen, Rasmus & Rhesus Macaque Genome Sequencing and Analysis Consortium, R. M. G. S. A. A. C., 2007, In: Science. 316, 5822, p. 222-34 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Rescuing ancient DNA.

    Gilbert, M Thomas P & Willerslev, Eske, 2007, In: Nature Biotechnology. 25, 8, p. 872-4 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis.

    Gilbert, M Thomas P, Binladen, J., Miller, W., Wiuf, C., Willerslev, Eske, Poinar, H., Carlson, J. E., Leebens-Mack, J. H. & Schuster, S. C., 2007, In: Nucleic Acids Research. 35, 1, p. 1-10 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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