- 2020
- Published
Unravelling interspecies interactions across heterogeneities in complex biofilm communities
Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- Published
You don’t have the guts: a diverse set of fungi survive passage through Macrotermes bellicosus termite guts [+ correction]
Bos, N., Guimaraes, L., Palenzuela, R., Renelies-Hamilton, J., Maccario, Lorrie, Silue, S. K., Koné, N. A. & Poulsen, Michael, 2020, In: BMC Evolutionary Biology. 20, 11 p., 163.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing
Gupta, S., Mortensen, M. S., Schjørring, S., Trivedi, Urvish, Vestergaard, G., Stokholm, Jakob, Bisgaard, H., Krogfelt, K. A. & Sørensen, Søren Johannes, 2019, In: Communications Biology. 2, p. 1-7 7 p., 291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil
Schostag, M., Priemé, Anders, Jacquiod, S., Russel, J., Ekelund, Flemming & Jacobsen, C. S., 2019, In: ISME Journal. 13, p. 1345-1359Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Big Impact of the Tiny: Bacteriophage–Bacteria Interactions in Biofilms
Hansen, Mads Frederik, Svenningsen, Sine Lo, Røder, Henriette Lyng, Middelboe, Mathias & Burmølle, Mette, 2019, In: Trends in Microbiology. 27, 9, p. 739-752 14 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Characterization of Extracellular Biosurfactants Expressed by a Pseudomonas putida Strain Isolated from the Interior of Healthy Roots from Sida hermaphrodita Grown in a Heavy Metal Contaminated Soil
Bernat, P., Nesme, Joseph, Paraszkiewicz, K., Schloter, M. & Płaza, G., 2019, In: Current Microbiology. 76, 11, p. 1320-1329 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of host associated microbiota under influencing factors: A case study on human gut and Brachypodium root
Wei, S., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
DNA-and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters
Gülay, A., Fowler, S. J., Tatari, K., Thamdrup, B., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2019, In: mBio. 10, 6, 14 p., e01870-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
Liu, W., Jacquiod, S., Brejnrod, A., Russel, J., Burmølle, Mette & Sørensen, Søren Johannes, 2019, In: ISME Journal. 13, 12, p. 3054-3066 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Decomposition of an N-fixing invasive plant compared with a native species: consequences for ecosystem
Marchante, E., Marchante, H., Freitas, H., Kjøller, Annelise Helene & Struwe, Sten, 2019, In: Applied Soil Ecology. 138, p. 19-31Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
Dahl, M. B., Brejnrod, A. D., Russel, J., Sørensen, Søren Johannes & Schnittler, M., 2019, In: Microbial Ecology. 78, 3, p. 764-780Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce
Paul Chowdhury, S., Babin, D., Sandmann, M., Jacquiod, S., Sommermann, L., Sørensen, Søren Johannes, Fliessbach, A., Mäder, P., Geistlinger, J., Smalla, K., Rothballer, M. & Grosch, R., 2019, In: Environmental Microbiology. 21, 7, p. 2426-2439Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of the Nursing Mother on the Gut Microbiome of the Offspring During Early Mouse Development
Treichel, N. S., Prevorsek, Z., Mrak, V., Kostric, M., Vestergaard, G., Foesel, B., Pfeiffer, S., Stres, B., Schöler, A. & Schloter, M., 2019, In: Microbial Ecology. 78, 2, p. 517-527Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluating Efficacy of Antimicrobial and Antifouling Materials for Urinary Tract Medical Devices: Challenges and Recommendations
Ramstedt, M., Ribeiro, I. A. C., Bujdakova, H., Mergulhão, F. J. M., Jordao, L., Thomsen, P., Alm, M., Burmølle, Mette, Vladkova, T., Can, F., Reches, M., Riool, M., Barros, A., Reis, R. L., Meaurio, E., Kikhney, J., Moter, A., Zaat, S. A. J. & Sjollema, J., 2019, In: Macromolecular Bioscience. 19, 5, 26 p., 1800384.Research output: Contribution to journal › Review › Research › peer-review
- Published
Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils
Voříšková, J., Elberling, Bo & Priemé, Anders, 2019, In: Environmental Microbiomes. 14, 1, 15 p., 6.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli
Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluidic resistance control enables high-throughput establishment of mixed-species biofilms
Hansen, Mads Frederik, Meyer Torp, A., Madsen, Jonas Stenløkke, Røder, Henriette Lyng & Burmølle, Mette, 2019, In: BioTechniques. 66, 5, p. 235-239Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites
Li, Xuan Ji, Brejnrod, A. D., Ernst, M., Rykær, M., Herschend, J., Olsen, N. M. C., Dorrestein, P. C., Rensing, C. & Sørensen, Søren Johannes, 2019, In: Environment International. 126, p. 454-467 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High throughput sequencing applied to analyze microbial communities in different animal models with an interpretation in a human health perspectives
Li, Xuan Ji, 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Human Milk Fortification with Bovine Colostrum Is Superior to Formula-Based Fortifiers to Prevent Gut Dysfunction, Necrotizing Enterocolitis, and Systemic Infection in Preterm Pigs
Sun, Jing, Li, Y., Pan, X., Nguyen, Duc Ninh, Brunse, Anders, Bojesen, Anders Miki, Rudloff, S., Mortensen, M. S., Burrin, D. G. & Sangild, Per Torp, 2019, In: Journal of Parenteral and Enteral Nutrition. 43, 2, p. 252-262Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of long-term agricultural management practices on soil prokaryotic communities
Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems
Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2019, In: Nature Communications. 10, 8 p., 5001.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into psychrotrophic bacteria in raw milk: A review
Yuan, L., Sadiq, F. A., Burmølle, Mette, Wang, N. & He, G., 2019, In: Journal of Food Protection. 82, 7, p. 1148-1159 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Interactions in Biofilm Communities
Olsen, N. M. C., 2019, Department of Biology, Faculty of Science, University of Copenhagen. 123 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model
Røder, Henriette Lyng, Liu, W., Sørensen, Søren Johannes, Madsen, Jonas Stenløkke & Burmølle, Mette, 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, Lars Hestbjerg, Horemans, B., Sørensen, Søren Johannes, De Mot, R. & Springael, D., 2019, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
Blau, K., Jacquiod, S., Sørensen, Søren Johannes, Su, J., Zhu, Y., Smalla, K. & Jechalke, S., 2019, In: Frontiers in Microbiology. 10, p. 1-15 725.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolism of Milk Oligosaccharides in Preterm Pigs Sensitive to Necrotizing Enterocolitis
Rudloff, S., Kuntz, S., Rasmussen, S. O., Roggenbuck, M., Sprenger, N., Kunz, C., Sangild, Per Torp & Bering, S. B., 2019, In: Frontiers in Nutrition. 6, 11 p., 23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel Perspective on Valorization of Keratinous Materials using Microbial Consortia
Kang, D., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus
Sáenz, J. S., Marques, T. V., Barone, R. S. C., Cyrino, J. E. P., Kublik, S., Nesme, Joseph, Schloter, M., Rath, S. & Vestergaard, G., 2019, In: Microbiome. 7, p. 1-14 24.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Priority of Early Colonizers but No Effect on Cohabitants in a Synergistic Biofilm Community
Olsen, N. M. C., Røder, Henriette Lyng, Russel, J., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 2019, In: Frontiers in Microbiology. 10, 8 p., 1949.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative Flow Cytometry to Understand Population Heterogeneity in Response to Changes in Substrate Availability in Escherichia coli and Saccharomyces cerevisiae Chemostats
Heins, A., Johanson, T., Han, S., Lundin, L., Carlquist, M., Gernaey, K. V., Sørensen, Søren Johannes & Lantz, A. E., 2019, In: Frontiers in Bioengineering and Biotechnology. 7, 15 p., 187.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome
Wolters, B., Fornefeld, E., Jechalke, S., Su, J., Zhu, Y., Sørensen, Søren Johannes, Smalla, K. & Jacquiod, S., 2019, In: F E M S Microbiology Reviews. 95, 1, p. 1-14 fiy193.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Chung, A. P., Coimbra, C., Farias, P., Francisco, R., Branco, R., Simão, F. V., Gomes, E., Pereira, A., Vila, M. C., Fiúza, A., Mortensen, M. S., Sørensen, Søren Johannes & Morais, P. V., 2019, In: Scientific Reports. 9, 13 p., 19596.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome: Results from a Randomized Crossover Intervention Study
Schmedes, M., Brejnrod, A. D., Aadland, E. K., Kiilerich, P., Kristiansen, Karsten, Jacques, H., Lavigne, C., Graff, I. E., Eng, Ø., Holthe, A., Mellgren, G., Young, J. F., Sundekilde, U. K., Liaset, B. & Bertram, H. C., 2019, In: Molecular Nutrition and Food Research. 63, 1, p. 1-8 1700976.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures
Heins, A., Lundin, L., Nunes, I., Gernaey, K. V., Sørensen, Søren Johannes & Eliasson Lantz, A., 2019, In: Biotechnology Progress. 35, 3, e2796.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The human milk microbiota is modulated by maternal diet
Padilha, M., Danneskiold-Samsøe, Niels Banhos, Brejnrod, A., Hoffmann, C., Cabral, V. P., Iaucci, J. D. M., Sales, C. H., Fisberg, R. M., Cortez, R. V., Brix, S., Taddei, C. R., Kristiansen, Karsten & Saad, S. M. I., 2019, In: Microorganisms. 7, 11, 18 p., 502.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits
Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants
Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254Research output: Contribution to journal › Journal article › Research › peer-review
- Published
To assemble or not to resemble - A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T. & Jacobsen, C. S., 2019, In: GigaScience. 8, 8, 10 p., giz096.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions
Trivedi, Urvish, Madsen, Jonas Stenløkke, Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Papio spp. Colon microbiome and its link to obesity in pregnancy
Li, Xuan Ji, Rensing, C., Taylor, W. L., Costelle, C., Brejnrod, A. D., Ferry, R. J. ,. J., Higgins, P. B., Folli, F., Kottapalli, K. R., Hubbard, G. B., Dick, E. J. ,. J., Yooseph, S., Nelson, K. E. & Schlabritz-Loutsevitch, N., Dec 2018, In: Journal of Medical Primatology. 47, 6, p. 393-401Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced bacterial mutualism through an evolved biofilm phenotype
Røder, Henriette Lyng, Herschend, J., Russel, J., Andersen, M. F., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 1 Nov 2018, In: I S M E Journal. 12, p. 2608-2618 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities
Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community
Li, L., Dechesne, A., He, Z., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Emissions of biogenic volatile organic compounds from arctic shrub litter are coupled with changes in the bacterial community composition
Svendsen, S. H., Priemé, Anders, Voriskova, J., Kramshoj, M., Schostag, M. D., Jacobsen, C. S. & Rinnan, Riikka, May 2018, In: Soil Biology & Biochemistry. 120, p. 80-90 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies
Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, Søren Johannes & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Most downloads
-
5129
downloads
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3026
downloads
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Research output: Contribution to conference › Poster › Research
Published -
2949
downloads
Extreme emission of n2o from tropical wetland soil (pantanal, South America)
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Latest publications
Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
Research output: Contribution to journal › Journal article › Research › peer-review
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Research output: Contribution to journal › Journal article › Research › peer-review
Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Research output: Book/Report › Ph.D. thesis › Research