Microbiology

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  1. 2006
  2. Published

    Genetic labelling and application of the isoproturonmineralizing Sphingomonas sp. strain SRS2 in soil and rhizosphere

    Kristensen, K. E., Jacobsen, C. S., Hansen, Lars Hestbjerg, Aamand, J., Morgan, J. A. W., Sternberg, C. & Sørensen, S. R., 2006, In: Letters in Applied Microbiology. 43, 3, p. 280-286 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Hussvamp og Skimmelsvamp: En uønsket gæst

    Hastrup, A. C. S., 2006, København, Denmark: KAB Fonden. 11 p.

    Research output: Book/Report › Report › Communication

  4. Published

    Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression

    Lorenzen, Eline, Simonsen, Bo Thisted, Kat, P. W., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Molecular Ecology. 15, 12, p. 3787-99 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA

    Gilbert, M Thomas P, Hansen, Anders Johannes, Willerslev, Eske, Turner-Walker, G. & Collins, M., 2006, In: International Journal of Osteoarchaeology. 16, 2, p. 156-164

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Nældefamilien, Urticaceae

    Rasmussen, Finn N., 2006, Dansk Flora. Frederiksen, S., Rasmussen, F. N. & Seberg, O. (eds.). 1. ed. København: Gyldendal, p. 419-420 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  7. Published

    Oxalidaceae-Cannabaceae

    Rasmussen, Finn N., 2006, Danske flora. Frederiksen, S., Rasmussen, F. N. & Seberg, O. (eds.). København: Gyldendal, p. 384-385 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  8. Published

    Storkenæbfamilien, Geraniaceae

    Rasmussen, Finn N., 2006, Dansk flora. Frederiksen, S., Rasmussen, F. N. & Seberg, O. (eds.). 1. ed. København: Gyldendal, p. 318–322 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  9. Published

    Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle

    Prangishvili, D., Vestergaard, G. A., Häring, M., Aramayo, R., Basta, T., Rachel, R. & Garrett, Roger Antony, 2006, In: Journal of Molecular Biology. 359, 5, p. 1203-1216 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Structure of a plant-pollinator network on a pahoehoe lava desert of the Galápagos Islands

    Philipp, M., Bøcher, J. J., Siegismund, Hans Redlef & Nielsen, Lene Rostgaard, 2006, In: Ecography. 29, 4, p. 531-540 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Testing for spatial clustering of amino acid replacements within protein tertiary structure.

    Yu, J. & Thorne, J. L., 2006, In: Journal of Molecular Evolution. 62, 6, p. 682-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    The Biological Time Machine - Biological responses to multiple environmental and climatic changes: Environment and Stress, Ph.d. symposium at KVL October 2006

    Albert, K., Ro-Poulsen, Helge, N. Mikkelsen, T., Michelsen, Anders, Beier, C., Jonasson, S. E., Ambus, Per Lennart, Schmidt, Inger Kappel, Holmstrup, M., Priemé, Anders & Christensen, Søren, 2006.

    Research output: Contribution to conference › Conference abstract for conference › Research

  13. Published

    Tracking down human contamination in ancient human teeth.

    Sampietro, M. L., Gilbert, M Thomas P, Lao, O., Caramelli, D., Lari, M., Bertranpetit, J. & Lalueza-Fox, C., 2006, In: Molecular Biology and Evolution. 23, 9, p. 1801-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. 2007
  15. Published

    5'-tailed sequencing primers improve sequencing quality of PCR products.

    Binladen, J., Gilbert, M Thomas P, Campos, P. F. & Willerslev, Eske, 2007, In: BioTechniques. 42, 2, p. 174-176

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    800,000 year old mammoth DNA, modern elephant DNA or PCR artefact?

    Binladen, J., Gilbert, M Thomas P & Willerslev, Eske, 2007, In: Biology Letters. 3, 1, p. 55-6; discussion 60-3

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Arsukibacterium ikkense gen. nov., sp. nov, a novel alkaliphilic, enzyme-producing ¿-proteobacterium isolated from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2007, In: Systematic and Applied Microbiology. 30, 3, p. 197-201 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Biomimetic studies of wood decay: Simulating the effect of low molecular weight compounds and fungal enzymes

    Hastrup, A. C. S., Howell, C. & Jellison, J., 2007. 16 p.

    Research output: Contribution to conference › Poster › Research

  19. Published

    A Bayesian multilocus association method: allowing for higher-order interaction in association studies

    Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA.

    Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M Thomas P, Younghusband, B., Young, T., Marshall, I., Willerslev, Eske, Stoneking, M. & Poinar, H., 2007, In: American Journal of Physical Anthropology. 132, 4, p. 594-604 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Adaptive genic evolution in the Drosophila genomes

    Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Ancient bacteria show evidence of DNA repair.

    Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Combined effects of drought, temperature and CO2 on GHG emissions from temperate shrub-land

    Ambus, Per Lennart, Priemé, Anders, S. Carter, M., Albert, K., S. Larsen, K., Andersson, M. & Beier, C., 2007.

    Research output: Contribution to conference › Conference abstract for conference › Research

  24. Published

    Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)

    Brandon Matheny, P., Wang, Z., Binder, M., Curtis, J. M., Lim, Y. W., Nilsson, R. H., Hughes, K. W., Hofstetter, V., Ammirati, J. F., Schoch, C. L., Langer, E., Langer, G., McLaughlin, D. J., Wilson, A. W., Frøslev, T., Ge, Z. W., Kerrigan, R. W., Slot, J. C., Yang, Z. L., Baroni, T. J. & 6 others, Fischer, M., Hosaka, K., Matsuura, K., Seidl, M. T., Vauras, J. & Hibbett, D. S., 2007, In: Molecular Phylogenetics and Evolution. 43, 2, p. 430-451 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    DNA extraction from dry museum beetles without conferring external morphological damage.

    Gilbert, M Thomas P, Moore, W., Melchior, L. & Worobey, M., 2007, In: PLoS ONE. 2, 3, p. e272

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques

    Hernandez, R. D., Hubisz, M. J., Wheeler, D. A., Smith, D. G., Ferguson, B., Rogers, J., Nazareth, L., Indap, A., Bourquin, T., McPherson, J., Muzny, D., Gibbs, R., Nielsen, Rasmus & Bustamante, C. D., 2007, In: Science. 316, 5822, p. 240-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Denitrification and N2O losses in a heath-land under changing climate conditions

    Ambus, Per Lennart, Priemé, Anders, S. Carter, M., Albert, K., S. Larsen, K., Andersson, M. & Beier, C., 2007.

    Research output: Contribution to conference › Conference abstract for conference › Research

  28. Published

    Dependence of paracentric inversion rate on tract length

    York, T. L., Durrett, R. & Nielsen, Rasmus, 2007, In: BMC Bioinformatics. 8, p. 115

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis

    Bernal Giraldo, A. J., Jensen, J. K., Harholt, J., Sørensen, S. O., Moller, I. E., Blaukopf, C., Johansen, B. B., Delotto, R., Pauly, M., Scheller, H. V. & Willats, W. G. T., 2007, In: Plant Journal. 52, 5, p. 791-802 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    EREMOPYRUM (Ledeb.) Jaub. & Spach.

    Frederiksen, S. E., 2007, Flora of North America North of Mexico: Volume 24: Magnoliophyta: Commelinidae (in part): Poaceae, part 1. Barkworth, M. E., Capels, K. M., Long, S. & Anderton, L. K. (eds.). New York, N.Y.: Oxford University Press, Vol. 24. p. 252-256

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  31. Published

    ERRATUM: Hyperforin accumulates in the translucent glands of Hypericum perforatum

    Soelberg, J., Jørgensen, L. B. & Jäger, A. K., 2007, In: Annals of Botany. 100, 3, p. 679 1 p.

    Research output: Contribution to journal › Letter › Research

  32. Published

    Establishment and early succession of a multispecies biofilm composed of soil bacteria

    Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: Microbial Ecology. 54, 2, p. 352-62 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Evaluating Neanderthal genetics and phylogeny.

    Hebsgaard, M. B., Wiuf, C., Gilbert, M Thomas P, Glenner, Henrik & Willerslev, Eske, 2007, In: Journal of Molecular Evolution. 64, 1, p. 50-60 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Evolutionary and biomedical insights from the rhesus macaque genome

    Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., Batzer, M. A., Bustamante, C. D., Eichler, E. E., Hahn, M. W., Hardison, R. C., Makova, K. D., Miller, W., Milosavljevic, A., Palermo, R. E., Siepel, A. & 31 others, Sikela, J. M., Attaway, T., Bell, S., Bernard, K. E., Buhay, C. J., Chandrabose, M. N., Dao, M., Davis, C., Delehaunty, K. D., Ding, Y., Dinh, H. H., Dugan-Rocha, S., Fulton, L. A., Gabisi, R. A., Garner, T. T., Godfrey, J., Hawes, A. C., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Kirkness, E. F., Cree, A., Fowler, R. G., Lee, S., Lewis, L. R., Nielsen, Rasmus & Rhesus Macaque Genome Sequencing and Analysis Consortium, R. M. G. S. A. A. C., 2007, In: Science. 316, 5822, p. 222-34 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Exploring variation in the d(N)/d(S) ratio among sites and lineages using mutational mappings: applications to the influenza virus

    Zhai, W., Slatkin, M. & Nielsen, Rasmus, 2007, In: Journal of Molecular Evolution. 65, 3, p. 340-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models

    Wong, W. S. W. & Nielsen, Rasmus, 2007, In: Bioinformatics. 23, 16, p. 2031-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    From Bits to Bauplan: Morphology in Orchid Studies

    Rasmussen, Finn N., 2007. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  38. Published

    Genes under positive selection in Escherichia coli

    Petersen, L., Bollback, J. P., Dimmic, M., Hubisz, M. & Nielsen, Rasmus, 2007, In: Genome Research. 17, 9, p. 1336-43 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Genome-wide patterns of nucleotide polymorphism in domesticated rice

    Caicedo, A. L., Williamson, S. H., Hernandez, R. D., Boyko, A., Fledel-Alon, A., York, T. L., Polato, N. R., Olsen, K. M., Nielsen, Rasmus, McCouch, S. R., Bustamante, C. D. & Purugganan, M. D., 2007, In: PLoS Genetics. 3, 9, p. 1745-56 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Hyperforin accumulates in the translucent glands of Hypericum perforatum.

    Soelberg, Jens, Jørgensen, L. B. & Jäger, A. K., 2007, In: Annals of Botany. 99, 6, p. 1097-1100 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Inbreeding depression in the partially self-incompatible endemic plant species Scalesia affinis (Asteraceae) from Galápagos islands

    Nielsen, Lene Rostgaard, Siegismund, Hans Redlef, Hansen, T. & Hansen, T. M., 2007, In: Evolutionary Ecology. 21, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

    Hey, J. & Nielsen, Rasmus, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 8, p. 2785-90 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Kafferbøflens slægtshistorie - Når klimaet dræber

    Heller, Rasmus, 2007, In: Naturens Verden. 91, 1, p. 34-40 7 p.

    Research output: Contribution to journal › Journal article › Research

  44. Published

    Localizing recent adaptive evolution in the human genome

    Williamson, S. H., Hubisz, M. J., Clark, A. G., Payseur, B. A., Bustamante, C. D. & Nielsen, Rasmus, 2007, In: PLoS Genetics. 3, 6, p. e90

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila

    Nielsen, Rasmus, Bauer DuMont, V. L., Hubisz, M. J. & Aquadro, C. F., 2007, In: Molecular Biology and Evolution. 24, 1, p. 228-35 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA.

    Malmström, H., Svensson, E. M., Gilbert, M Thomas P, Willerslev, Eske, Götherström, A. & Holmlund, G., 2007, In: Molecular Biology and Evolution. 24, 4, p. 998-1004 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Multiplex PCR with minisequencing as an effective high-throughput SNP typing method for formalin-fixed tissue.

    Gilbert, M Thomas P, Sanchez, J. J., Haselkorn, T., Jewell, L. D., Lucas, S. B., Van Marck, E., Børsting, Claus, Morling, Niels & Worobey, M., 2007, In: Electrophoresis. 28, 14, p. 2361-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Patterns of mutation and selection at synonymous sites in Drosophila

    Singh, N. D., Bauer DuMont, V. L., Hubisz, M. J., Nielsen, Rasmus & Aquadro, C. F., 2007, In: Molecular Biology and Evolution. 24, 12, p. 2687-97 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Phylogeny of the snailfishes (Teleostei: Liparidae) based on molecular and morphological data.

    Knudsen, S. W., Møller, Peter Rask & Nielsen, P. G., 2007, In: Molecular Phylogenetics and Evolution. 44, p. 649-666 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)

    Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population

    Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Population genetics without intraspecific data.

    Thorne, J. L., Choi, S. C., Yu, J., Higgs, P. G. & Kishino, H., 2007, In: Molecular Biology and Evolution. 24, 8, p. 1667-77 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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