Microbiology

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  1. Published

    Enzymatic oxalic acid regulation correlated with wood degradation in four brown-rot fungi

    Hastrup, A. C. S., Green, F., Lebow, P. K. & Jensen, B., 2012, In: International Biodeterioration and Biodegradation. 75, p. 109-114 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Eosinophilic airway inflammation in asthmatic patients is associated with an altered airway microbiome

    Sverrild, Asger, Kiilerich, P., Brejnrod, A. D., Pedersen, R., Porsbjerg, Celeste Michala, Bergqvist, A., Erjefält, J. S., Kristiansen, Karsten & Backer, Vibeke, Aug 2017, In: Journal of Allergy and Clinical Immunology. 140, 2, p. 407-417 e11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age

    Morin, A., McKennan, C. G., Pedersen, C. T., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Schoos, A. M., Naughton, K. A., Thorsen, Jonathan Jan Ilve, Mortensen, M. S., Vercelli, D., Trivedi, Urvish, Sørensen, Søren Johannes, Bisgaard, H., Nicolae, D. L., Bønnelykke, Klaus & Ober, C., 2020, In: Journal of Allergy and Clinical Immunology. 146, 6, p. 1358-1366

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Erratum: Activity of novel 4-PIOL analogues at human α1β2γ2S GABAA receptors - Correlation with hydrophobicity (European Journal of Pharmacology (2000) 451 (125-132))

    Mortensen, M., Frølund, Bente, Jorgensen, A. T., Liljefors, T., Krogsgaard-Larsen, Povl & Ebert, B., 25 Oct 2002, In: European Journal of Pharmacology. 453, 2-3, p. 345-346 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  5. Published

    Establishment and early succession of a multispecies biofilm composed of soil bacteria

    Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: Microbial Ecology. 54, 2, p. 352-62 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community

    Li, L., Dechesne, A., He, Z., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  7. Published

    Estimation of 2N(e)s from temporal allele frequency data

    Bollback, J. P., York, T. L. & Nielsen, Rasmus, 2008, In: Genetics. 179, p. 497-502 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Eugen Warming i Lagoa Santa

    Johansen, B. B., 1992, In: Orkideer. 1, p. 29-33

    Research output: Contribution to journal › Journal article › Communication

  9. Published

    Evaluating Efficacy of Antimicrobial and Antifouling Materials for Urinary Tract Medical Devices: Challenges and Recommendations

    Ramstedt, M., Ribeiro, I. A. C., Bujdakova, H., Mergulhão, F. J. M., Jordao, L., Thomsen, P., Alm, M., Burmølle, Mette, Vladkova, T., Can, F., Reches, M., Riool, M., Barros, A., Reis, R. L., Meaurio, E., Kikhney, J., Moter, A., Zaat, S. A. J. & Sjollema, J., 2019, In: Macromolecular Bioscience. 19, 5, 26 p., 1800384.

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    Evaluating Neanderthal genetics and phylogeny.

    Hebsgaard, M. B., Wiuf, C., Gilbert, M Thomas P, Glenner, Henrik & Willerslev, Eske, 2007, In: Journal of Molecular Evolution. 64, 1, p. 50-60 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Evolutionary and biomedical insights from the rhesus macaque genome

    Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., Batzer, M. A., Bustamante, C. D., Eichler, E. E., Hahn, M. W., Hardison, R. C., Makova, K. D., Miller, W., Milosavljevic, A., Palermo, R. E., Siepel, A. & 31 others, Sikela, J. M., Attaway, T., Bell, S., Bernard, K. E., Buhay, C. J., Chandrabose, M. N., Dao, M., Davis, C., Delehaunty, K. D., Ding, Y., Dinh, H. H., Dugan-Rocha, S., Fulton, L. A., Gabisi, R. A., Garner, T. T., Godfrey, J., Hawes, A. C., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Kirkness, E. F., Cree, A., Fowler, R. G., Lee, S., Lewis, L. R., Nielsen, Rasmus & Rhesus Macaque Genome Sequencing and Analysis Consortium, R. M. G. S. A. A. C., 2007, In: Science. 316, 5822, p. 222-34 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Expanding known viral diversity in the healthy infant gut

    Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Experimental design of multifactor climate change experiments with elevated CO2, warming and drought: the CLIMAITE project

    Mikkelsen, T. N., Beier, C., Jonasson, S. E., Holmstrup, M., Schmidt, I. K., Ambus, P. L., Pilegaard, K., Michelsen, A., Albert, K., Andresen, L. C., Arndal, M. F., Bruun, N., Christensen, S., Danbæk, S., Gundersen, P., Jørgensen, P., Linden, L., Nielsen, J. K., Maraldo, K., Priemé, A. & 11 others, Riis-Nielsen, Torben, Ro-Poulsen, Helge, Andersen, K. S., Selsted, M. B., Sørensen, P., Larsen, Klaus Steenberg, Carter, M. S., Ibrom, A., Martinussen, Torben, Miglietta, F. & Sverdrup, H., 2008, In: Functional Ecology. 22, 1, p. 185-195 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Experimental methods and modeling techniques for description of cell population heterogeneity

    Lencastre Fernandes, R., Nierychlo, M., Lundin, L., Pedersen, A. E., Tellez, P. E. P., Dutta, A., Carlquist, M., Bolic, A., Schäpper, D., Brunetti, A. C., Helmark, S., Heins, A-L., Jensen, A. D., Nopens, I., Rottwitt, K., Szita, N., Elsas, J. D. V., Nielsen, P. H., Martinussen, J., Sørensen, S. J. & 2 others, Eliasson Lantz, A. & Gernaey, K., 2011, In: Biotechnology Advances. 29, 6, p. 575-599 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Experimental observation of coherence resonance in cascaded excitable systems

    Postnov, D. E., Han, S., Yim, T. & Sosnovtseva, Olga, Apr 1999, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 59, 4, p. R3791-R3794

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Exploring Microbial Communities; Composition, Interactions and Application: Bioinformatical Analysis of RNA and DNA

    Hansen, L. B. S., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  17. Published

    Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design

    Balbín-Suárez, A., Lucas, M., Vetterlein, D., Sørensen, Søren Johannes, Winkelmann, T., Smalla, K. & Jacquiod, S., 2020, In: FEMS Microbiology Ecology. 96, 12, 12 p., fiaa211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods

    Dealtry, S., Nour, E. H., Holmsgaard, P. N., Ding, G. C., Weichelt, V., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Springael, D. & Smalla, K., 2016, In: F E M S Microbiology Ecology. 92, 2, 12 p., fiv157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

    Riber, Leise, Poulsen, P. H. B., Abu Al-Soud, W., Hansen, L. B. S., Bergmark, L., Brejnrod, A. D., Norman, A., Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 206-224 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Exploring variation in the d(N)/d(S) ratio among sites and lineages using mutational mappings: applications to the influenza virus

    Zhai, W., Slatkin, M. & Nielsen, Rasmus, 2007, In: Journal of Molecular Evolution. 65, 3, p. 340-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Exposure of consumers to substandard antibiotics from selected authorised and unauthorised medicine sales outlets in Ghana

    Bekoe, S. O., Ahiabu, M. A., Orman, E., Tersbøl, Britt Pinkowski, Adosraku, R. K., Hansen, M., Frimodt-Møller, N. & Styrishave, Bjarne, 2020, In: Tropical Medicine and International Health. 25, 8, p. 962-975 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

    Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Extrachromosomal circular DNA is common in yeast

    Møller, H. D., Parsons, L., Jørgensen, T. S., Botstein, D. & Regenberg, Birgitte, 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 24, p. E3114–E3122 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Extracting DNA from soil or directly from isolated nematodes indicate dissimilar community structure for Europe-wide forest soils

    Donhauser, J., Briones, M. J. I., Mikola, J., Jones, D. L., Eder, R., Filser, J., Frossard, A., Krogh, P. H., Sousa, J. P., Cortet, J., Desie, E., Domene, X., Djuric, S., Hackenberger, D., Jimenez, J. J., Iamandei, M., Rissmann, C., Schmidt, O., Shanskiy, M., Silfver, T. & 4 others, Vancampenhout, K., Vasutova, M., Velizarova, E. & Frey, B., 2023, In: Soil Biology and Biochemistry. 185, 16 p., 109154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Extreme emission of N2O from tropical wetland soil (Pantanal, South America)

    Møller, L. L. H., Nielsen, L. P., Revsbech, N. P., Priemé, Anders, Elberling, Bo, Enrich-Prast, A. & Kühl, Michael, 2013, In: Frontiers in Microbiology. 3, 13 p., 433.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Extreme emission of n2o from tropical wetland soil (pantanal, South America)

    Møller, L. L. H., Nielsen, L. P., Revsbech, N. P., Priemé, Anders, Elberling, Bo, Enrich-Prast, A. & Kühl, Michael, 2012, In: Frontiers in Microbiology. 3, p. 1-13 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Extreme freeze-thaw cycles do not affect moss-associated nitrogen fixation across a temperature gradient, but affect nutrient loss from mosses

    Rousk, Kathrin, Pedersen, P., Priemé, Anders & Michelsen, Anders, Nov 2021, In: Acta Oecologica. 113, 10 p., 103796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Extreme genetic differences among populations of Gazella granti, Grant's gazelle in Kenya

    Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, In: Heredity. 76 ( Pt 5), p. 465-75 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals

    Zadel, U., Cruzeiro, C., Raj Durai, A. C., Nesme, Joseph, May, R., Balázs, H., Michalke, B., Płaza, G., Schröder, P., Schloter, M. & Radl, V., 2022, In: Environmental Pollution. 313, 13 p., 119989.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models

    Madsen, Jonas Stenløkke, Lin, Y. C., Squyres, G. R., Price-Whelan, A., Torio, A. D. S., Song, A., Cornell, W. C., Sørensen, Søren Johannes, Xavier, J. B. & Dietrich, L. E. P., 2015, In: Applied and Environmental Microbiology. 81, 24, p. 8414-8426 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils

    Voříšková, J., Elberling, Bo & Priemé, Anders, 2019, In: Environmental Microbiomes. 14, 1, 15 p., 6.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Feasibility study on the spatial and temporal movement of Samburu's cattle and wildlife in Kenya using GPS radio-tracking, remote sensing and GIS

    Raizman, E. A., Rasmussen, H. B., King, L. E., Ihwagi, F. W. & Douglas-Hamilton, I., 2013, In: Preventive Veterinary Medicine. 111, 1-2, p. 76-80 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Fertilizer regime and cultivar affect barley growth and rhizobiome composition

    Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Field determination of denitrification in water-logged forest soils

    Struwe, Sten & Kjøller, Annelise Helene, Feb 1989, In: FEMS Microbiology Letters. 62, 2, p. 71-78 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models

    Wong, W. S. W. & Nielsen, Rasmus, 2007, In: Bioinformatics. 23, 16, p. 2031-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    First maxillae suction discs in Branchiura (Crustacea): Development and evolution in light of the first molecular phylogeny of Branchiura, Pentastomida, and other ''Maxillopoda''

    Møller, O. S., Olesen, Jørgen, Avenant-Oldewage, A., Thomsen, P. F. & Glenner, Henrik, 2008, In: Arthropod Structure & Development. 37, p. 333-346

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Fitness cost: a bacteriological explanation for the demise of the first international methicillin-resistant Staphylococcus aureus epidemic

    Nielsen, K. L., Pedersen, T. M., Udekwu, K. I., Petersen, A., Skov, R. L., Hansen, Lars Hestbjerg, Hughes, D. & Frimodt-Moller, N., 2012, In: Journal of Antimicrobial Chemotherapy. 67, 6, p. 1325-1332 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Five pesticides decreased oxidation of atmospheric methane in a forest soil

    Priemé, Anders & Ekelund, Flemming, 2001, In: Soil Biology & Biochemistry. 33, 6, p. 831-835 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Flora i kridt

    Rasmussen, Hanne Nina, Jacobsen, Niels & Rasmussen, Finn N., 1978, Beretning og regnskab for selskabets 88. regnskabsår 1977, Ålborg Portland. Ålborg, p. 19-24 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Commissioned

  42. Published

    Fluidic resistance control enables high-throughput establishment of mixed-species biofilms

    Hansen, Mads Frederik, Meyer Torp, A., Madsen, Jonas Stenløkke, Røder, Henriette Lyng & Burmølle, Mette, 2019, In: BioTechniques. 66, 5, p. 235-239

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments

    Pinilla Redondo, Rafael, Riber, Leise & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Fluoroquinolone resistance mechanisms in urinary tract pathogenic Escherichia coli isolated during rapidly increasing fluoroquinolone consumption in a low-use country

    Christiansen, N., Nielsen, L., Jakobsen, L., Stegger, M., Hansen, Lars Hestbjerg & Frimodt-Moller, N., 2011, In: Microbial Drug Resistance. 17, 3, p. 395-406 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Fluxes of NO3-, NH4+, NO, NO2, and N2O in an old danish beech forest

    Beier, Claus, Rasmussen, L., Pilegaard, K., Ambus, Per Lennart, Mikkelsen, T. N., Jensen, N. O., Kjøller, Annelise Helene, Priemé, Anders & Ladekarl, U. L., 2001, In: Water, Air, and Soil Pollution: Focus. 1, p. 187-195

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Flygtninge er mennesker i krise.

    Bang-Achton, I., Gollin, J., Mide, A., Kjøller, Annelise Helene & Andersen, L., 12 Mar 1986, In: Sygeplejersken. 86, 11, p. 18 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Frede Fup

    Seberg, Ole & Johansen, B. B., 1991, In: URT. 1991 (3), p. 92-99

    Research output: Contribution to journal › Journal article › Research

  48. Published

    Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease

    Kanfra, X., Liu, B., Beerhues, L., Sørensen, Søren Johannes & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    From Bits to Bauplan: Morphology in Orchid Studies

    Rasmussen, Finn N., 2007. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  50. Published

    Functional groups of bacteria on decomposing ash litter.

    Struwe, Sten & Kjøller, Annelise Helene, 1985, In: Pedobiologia. 28, 6, p. 367-376 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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