Microbiology

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  1. 2023
  2. Published

    Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults

    Li, Xuan Ji, Brejnrod, A., Thorsen, J., Zachariasen, Trine, Trivedi, Urvish, Russel, J., Vestergaard, G. A., Stokholm, Jakob, Rasmussen, Morten Arendt & Sørensen, Søren Johannes, 2023, In: Nature Communications. 14, 1, 16 p., 8526.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas, Bacillus, Pseudochrobactrum, Brevundimonas, and Pandoraea

    Maccario, Lorrie, Silva, A. F., Nesme, Joseph, Amador Hierro, Cristina Isabel, Sørensen, Søren Johannes, Cooper, V. S. & Røder, Henriette Lyng, 2023, In: Microbiology resource announcements. 12, 12, 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  4. Published

    Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms – an example from dairy isolates

    Sadiq, F. A., De Reu, K., Steenackers, H., Van De Walle, A., Burmølle, Mette & Heyndrickx, M., 2023, In: ISME communications. 3, 1, 12 p., 118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Expanding known viral diversity in the healthy infant gut

    Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Extracting DNA from soil or directly from isolated nematodes indicate dissimilar community structure for Europe-wide forest soils

    Donhauser, J., Briones, M. J. I., Mikola, J., Jones, D. L., Eder, R., Filser, J., Frossard, A., Krogh, P. H., Sousa, J. P., Cortet, J., Desie, E., Domene, X., Djuric, S., Hackenberger, D., Jimenez, J. J., Iamandei, M., Rissmann, C., Schmidt, O., Shanskiy, M., Silfver, T. & 4 others, Vancampenhout, K., Vasutova, M., Velizarova, E. & Frey, B., 2023, In: Soil Biology and Biochemistry. 185, 16 p., 109154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

    Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities

    Fang, Chao, Sun, X., Fan, F., Zhang, X., Wang, O., Zheng, Haotian, Peng, Z., Luo, X., CHEN, Ao, Zhang, W., Drmanac, R., Peters, B. A., Song, Z. & Kristiansen, Karsten, 2023, In: Cell Reports Methods. 3, 3, 16 p., 100437.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Long-term immersion of compostable plastics in marine aquarium: Microbial biofilm evolution and polymer degradation

    Delacuvellerie, A., Brusselman, A., Cyriaque, V., Benali, S., Moins, S., Raquez, J. M., Gobert, S. & Wattiez, R., 2023, In: Marine Pollution Bulletin. 189, 10 p., 114711.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance

    Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.

    Research output: Book/Report › Ph.D. thesis › Research

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