Social Systems Microbiology

Are you fascinated by the hidden world of bacteria and their complex social interactions? Our research group dives deep into the molecular biology and evolution of how bacteria interact, focusing on the intriguing dynamics of conflict, manipulation, sharing, and dependencies among bacteria, plasmids, and phages.

 

The Social Systems Microbiology group dives deep into the molecular biology and evolution of how bacteria interact, focusing on the intriguing dynamics of conflict, manipulation, sharing, and dependencies among bacteria, plasmids, and phages.

We are particularly interested in the role of horizontal gene transfer, which is the sharing of genes between bacteria, and how this affects their interactions. A major concern is the rise in antibiotic resistance among harmful bacteria, which is a frightening result of this rampant gene-sharing process. Genes are usually shared via mobile genetic elements like plasmids and bacteriophages. We study how these elements interact with each other and with the host, as well as how these interactions influence the social behavior of the host bacteria.

By using advanced methods and techniques, we study bacteria at the single-cell level revealing, e.g., that even genetically identical bacteria, plasmids, and phages can exhibit complex social behaviors like cooperation, altruism, division of labor, and bet-hedging.

 

 

In the Social Systems Microbiology group we build hypothesis and test them by utilizing and developing advanced molecular methods, for example:

  • Genome Engineering (e.g., CRISPR-Cas)
  • Synthetic Biology
  • Fluorescence Reporter Gene Technologies
  • Flow cytometry and Cell Sorting
  • Confocal Microscopy
  • Genome, Amplicon and Meta-genomic sequencing
  • Single Cell Transcriptomics (and Genomics)
  • Advanced Microbiology Methods

 

 

If you're a student looking for an exciting research or thesis project (BSc or MSc), we invite you to contact PI Jonas Stenløkke Madsen. Here are some of the fascinating topics you could explore with us:

  • Cooperative antibiotic resistance
  • Division of labor and bet-hedging in clonal populations
  • Phage therapy and evolutionary medicine
  • Phage and plasmid manipulation of their hosts via intracellular signaling
  • Plasmid-host crosstalk and transfer of antibiotic resistance genes
  • Bioinformatic analysis (e.g. of single-cell transcriptomics/genomics)

 

Group leader

Jonas Stenløkke Madsen
Principal Investigator

Phone +45 40 22 00 69
jsmadsen@bio.ku.dk

Group members

Name Title Phone E-mail
Anette Hørdum Løth Laboratory Technician. +4535330138 E-mail
Ayoe Lüchau Laboratory Coordinator +4529938778 E-mail
Jonas Stenløkke Madsen Associate Professor +4535330140 E-mail
Qinqin Wang Postdoc E-mail
Rodrigo Ibarra Chavez Assistant Professor +4535330304 E-mail
Siwei Liang PhD Student E-mail
Tilde Birch Research Assistant +4535333626 E-mail