Department of Biology

 

 
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  1. 2020
  2. Published

    Morphological and phylogenetic data do not support the split of Alexandrium into four genera

    Mertens, K. N., Adachi, M., Anderson, D. M., Band-Schmidt, C. J., Bravo, I., Brosnahan, M. L., Bolch, C. J. S., Calado, A. J., Carbonell-Moore, M. C., Chomérat, N., Elbrächter, M., Figueroa, R. I., Fraga, S., Gárate-Lizárraga, I., Garcés, E., Gu, H., Hallegraeff, G., Hess, P., Hoppenrath, M., Horiguchi, T. & 30 others, Iwataki, M., John, U., Kremp, A., Larsen, Jacob, Leaw, C. P., Li, Z., Lim, P. T., Litaker, W., MacKenzie, L., Masseret, E., Matsuoka, K., Moestrup, Øjvind, Montresor, M., Nagai, S., Nézan, E., Nishimura, T., Okolodkov, Y. B., Orlova, T. Y., Reñé, A., Sampedro, N., Satta, C. T., Shin, H. H., Siano, R., Smith, K. F., Steidinger, K., Takano, Y., Tillmann, U., Wolny, J., Yamaguchi, A. & Murray, S., 2020, In: Harmful Algae. 98, 8 p., 101902.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions—Insights from transcription factors

    Millard, P. S., Bugge, K., Marabini, R., Boomsma, Wouter, Burow, Meike & Kragelund, Birthe Brandt, 2020, In: Protein Science. 29, 1, p. 169-183 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    How pirate phage interferes with helper phage: Comparison of the two distinct strategies

    Mitarai, Namiko, 7 Feb 2020, In: Journal of Theoretical Biology. 486, 9 p., 110096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Purification and initial characterization of Plasmodium falciparum K+ channels, PfKch1 and PfKch2 produced in Saccharomyces cerevisiae

    Molbaek, K., Tejada, M., Ricke, C. H., Scharff-Poulsen, P., Ellekvist, P., Helix-Nielsen, C., Kumar, N., Klærke, Dan Arne & Pedersen, Per Amstrup, 2020, In: Microbial Cell Factories. 19, 1, 183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Elaphomyces section Elaphomyces (Eurotiales, Ascomycota) —taxonomy and phylogeny of North European taxa, with the introduction of three new species

    Molia, A., Larsson, E., Jeppson, M., Læssøe, Thomas & Larsson, K., 2020, In: Fungal Systematics and Evolution. 5, 1, p. 283-300

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Latitudinal variation in seed predation correlates with latitudinal variation in seed defensive and nutritional traits in a widespread oak species

    Moreira, X., Abdala-Roberts, L., Bruun, Hans Henrik, Covelo, F., De Frenne, P., Galmán, A., Gaytán, Á., Jaatinen, R., Pulkkinen, P., Ten Hoopen, J. P. J. G., Timmermans, B. G. H., Tack, A. J. M. & Castagneyrol, B., 2020, In: Annals of Botany. 125, 6, p. 881-890 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

    Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Bayesian protein superposition using Hamiltonian Monte Carlo

    Sanz Moreta, Lys, Al-Sibahi, A. S. & Hamelryck, Thomas Wim, Oct 2020, Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020. IEEE, p. 1-11 9288019

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  10. Published

    Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age

    Morin, A., McKennan, C. G., Pedersen, C. T., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Schoos, A. M., Naughton, K. A., Thorsen, Jonathan Jan Ilve, Mortensen, M. S., Vercelli, D., Trivedi, Urvish, Sørensen, Søren Johannes, Bisgaard, H., Nicolae, D. L., Bønnelykke, Klaus & Ober, C., 2020, In: Journal of Allergy and Clinical Immunology. 146, 6, p. 1358-1366

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Litter legacy after spruce plantation removal hampers initial vegetation establishment

    Morsing, J., Kepfer Rojas, Sebastian, Båstrup-Spohr, Lars, López Rodríguez, A. & Raulund-Rasmussen, Karsten, 2020, In: Basic and Applied Ecology. 42, p. 4-14 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Fibroblasts direct differentiation of human breast epithelial progenitors

    Morsing, M., Kim, Jiyoung, Villadsen, René, Goldhammer, N., Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Petersen, Ole William & Rønnov-Jessen, Lone, 2020, In: Breast Cancer Research. 22, 16 p., 102.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Effect of ash application on the decomposer food web and N mineralization in a Norway spruce plantation

    Mortensen, Louise Hindborg, Cruz-Paredes, C., Qin, J., Rønn, Regin & Vestergård, M., 2020, In: Science of the Total Environment. 715, 10 p., 136793.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Analysis of caveolin in primary cilia

    Morthorst, Stine Kjær, Mogensen, J. B., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 2020, Caveolae: Methods and Protocols. Blouin, C. M. (ed.). Humana Press, p. 27-41 (Methods in Molecular Biology, Vol. 2169).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  15. Published

    Characterization of a lipid-producing thermotolerant marine photosynthetic pico-alga in the genus Picochlorum (Trebouxiophyceae)

    Mucko, M., Padisák, J., Gligora Udovic, M., Pálmai, T., Novak, T., Medic, Nikola, Gasparovic, B., Peharec Stefanic, P., Orlic, S. & Ljubesic, Z., 2020, In: European Journal of Phycology. 55, 4, p. 384-399 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Specialized meltwater biodiversity persists despite widespread deglaciation

    Muhlfeld, C. C., Cline, T. J., Giersch, J. J., Peitzsch, E., Florentine, C., Jacobsen, Dean & Hotaling, S., 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 22, p. 12208-12214 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The impact of calmodulin on the cell cycle analyzed in a novel human cellular genetic system

    Munk, M., Alcalde, J., Lorentzen, Lasse Gøbel, Villalobo, A., Berchtold, Martin Werner & Panina, S., 2020, In: Cell Calcium. 88, 8 p., 102207.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    AgNO3 sterilizes grains of barley (Hordeum vulgare) without inhibiting germination - a necessary tool for plant–microbiome research

    Munkager, V., Vestergård, M., Priemé, Anders, Altenburger, A., de Visser, E., Johansen, Jesper Liengaard & Ekelund, Flemming, 2020, In: Plants. 9, 3, 16 p., 372.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Plant-microbiota interactions in a nutrient Context & an assay to deduct mechanistic relationships between plants and microbiota

    Munkager, V., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Ongoing revision of Echiniscoididae (Heterotardigrada: Echiniscoidea), with the description of a new interstitial species and genus with unique anal structures

    Møbjerg, Nadja, Jørgensen, Aslak & Kristensen, Reinhardt Møbjerg, 2020, In: Zoological Journal of the Linnean Society . 188, 3, p. 663-680 18 p., zlz122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Research presented at the 14th International Symposium on Tardigrada: progress in studies on water bears

    Møbjerg, Nadja, Michalczyk, Ł., McInnes, S. J. & Christenhusz, M. J. M., 2020, In: Zoological Journal of the Linnean Society . 188, 3, p. 655-662

    Research output: Contribution to journal › Editorial › Research › peer-review

  22. Published

    Circle-Seq: Isolation and Sequencing of Chromosome-Derived Circular DNA Elements in Cells

    Møller, H. D., 2020, DNA Electrophoresis: Methods and Protocols. Hanada, K. (ed.). Humana Press, p. 165-181 17 p. (Methods in Molecular Biology, Vol. 2119).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome

    Møller, H. D., Ramos Madrigal, Jazmin, Prada Luengo, Inigo, Gilbert, M Thomas P & Regenberg, Birgitte, 2020, In: Genome Biology and Evolution. 12, 2, p. 3762-3777 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Fuglesamfund i spritnye og naturlige søer

    Møller, M. J., Sand-Jensen, Kaj & Kragh, T., 2020, In: Vand & Jord. 27, 4, p. 161-165

    Research output: Contribution to journal › Journal article › Communication

  25. Published

    Modeling the Influence of Ambient Temperature on the Interactions Between the Stable Fly (Diptera: Muscidae) and Its Natural Enemy Spalangia cameroni (Hymenoptera: Pteromalidae) to Assess Consequences of Climate Change

    Nachman, Gøsta Støger & Skovgård, H., 2020, In: Environmental Entomology. 49, 2, p. 342-354 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The gene expression network regulating queen brain remodeling after insemination and its parallel use in ants with reproductive workers

    Nagel, M., Qiu, Bitao, Brandenborg, L. E., Larsen, Rasmus Stenbak, Ning, D., Boomsma, Jacobus J. & KU, thw266, 2020, In: Science Advances. 6, 38, 17 p., eaaz5772.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Community-intrinsic properties enhance keratin degradation from bacterial consortia

    Nasipuri, P., Herschend, J., Brejnrod, A. D., Madsen, Jonas Stenløkke, Espersen, R., Svensson, B., Burmølle, Mette, Jacquiod, S. & Sørensen, Søren Johannes, 2020, In: PLoS ONE. 15, 1, 26 p., e0228108.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Habitat complexity influences selection of thermal environment in a common coral reef fish

    Nay, T. J., Johansen, J. L., Rummer, J. L., Steffensen, John Fleng, Pratchett, M. S. & Hoey, A. S., 2020, In: Conservation Physiology. 8, 1, 9 p., coaa070.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Peptides containing the PCNA interacting motif APIM bind to the β-clamp and inhibit bacterial growth and mutagenesis

    Nedal, A., Ræder, S. B., Dalhus, B., Helgesen, E., Forstrøm, R. J., Lindland, K., Sumabe, B. K., Martinsen, J. H., Kragelund, Birthe Brandt, Skarstad, K., Bjørås, M. & Otterlei, M., 2020, In: Nucleic Acids Research. 48, 10, p. 5540-5554 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Thermotolerance experiments on active and desiccated states of Ramazzottius varieornatus emphasize that tardigrades are sensitive to high temperatures

    Neves, R. C., Hvidepil, L. K. B., Sørensen-Hygum, T. L., Stuart, R. M. & Møbjerg, Nadja, 2020, In: Scientific Reports. 10, 12 p., 94.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    An RNAi independent antiviral activity of the Arabidopsis thaliana DCL2

    Nielsen, C. P. S., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 104 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Assessing the reproductive biology of the Greenland shark (Somniosus microcephalus)

    Nielsen, J., Hedeholm, R. B., Lynghammar, A., McClusky, L. M., Berland, B., Steffensen, John Fleng & Christiansen, J. S., 2020, In: PLoS ONE. 15, 10, 22 p., e0238986.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Effects of the DSP-toxic dinoflagellate Dinophysis acuta on clearance and respiration rate of the blue mussel, Mytilus edulis

    Nielsen, P., Krock, B., Hansen, Per Juel & Vismann, Bent, 2020, In: P L o S One. 15, 3, 19 p., e0230176.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Data integration for prediction of weight loss in randomized controlled dietary trials

    Nielsen, R. L., Helenius, M., Garcia, S. L., Roager, H. M., Aytan-Aktug, D., Hansen, L. B. S., Lind, M. V., Vogt, J. K., Dalgaard, M. D., Bahl, M. I., Jensen, C. B., Muktupavela, R., Warinner, C., Aaskov, V., Gøbel, R., Kristensen, M. B., Frøkiær, H., Sparholt, M. H., Christensen, A. F., Vestergaard, H. & 8 others, Hansen, Torben, Kristiansen, Karsten, Brix, Susanne, Petersen, T. N., Lauritzen, Lotte, Licht, T. R., Pedersen, Oluf Borbye & Gupta, R., 2020, In: Scientific Reports. 10, 15 p., 20103.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Protein destabilization and degradation as a mechanism for hereditary disease

    Nielsen, S. V., Schenstrøm, S. M., Christensen, Caspar Elo, Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2020, Protein Homeostasis Diseases: Mechanisms and Novel Therapies. Pey, A. L. (ed.). Elsevier, p. 111-125

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  36. Published

    Flow and epiphyte growth effects on the thermal, optical and chemical microenvironment in the leaf phyllosphere of seagrass (Zostera marina)

    Noisette, F., Depetris, A., Kühl, Michael & Brodersen, Kasper Elgetti, 2020, In: Journal of the Royal Society Interface. 17, 171, 2020.0485.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Fundamentals of Bicarbonate Secretion in Epithelia

    Novak, Ivana & Praetorius, J., 2020, Basic Epithelial Ion TransportPrinciples and Function: Ion Channels and Transporters of Epitheliain Health and Disease. Hamilton, K. L. & Devor, D. C. (eds.). 2. ed. Springer, Vol. 1. p. 461-541 (Physiology in Health and Disease).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  38. Published

    Purinergic Signaling in Pancreas - From Physiology to Therapeutic Strategies in Pancreatic Cancer

    Novak, Ivana, Yu, Haoran, Magni, Lara & Deshar, Ganga, 2020, In: International Journal of Molecular Sciences (Online). 21, 22, 21 p., 8781.

    Research output: Contribution to journal › Review › Research › peer-review

  39. Published

    Ancient Genome Atlas

    Nørtoft, Mikkel & Schroeder, Hannes, 20 Aug 2020

    Research output: Non-textual form › Interactive production › Communication

  40. Published

    Diverse coral reef invertebrates exhibit patterns of phylosymbiosis

    O'Brien, P. A., Tan, S., Yang, C., Frade, P. R., Andreakis, N., Smith, H. A., Miller, D. J., Webster, N. S., KU, thw266 & Bourne, D. G., 2020, In: ISME Journal. 14, 9, p. 2211-2222 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    SPT6-driven error-free DNA repair safeguards genomic stability of glioblastoma cancer stem-like cells

    Obara, E. A. A., Aguilar-Morante, D., Rasmussen, R. D., Frias, A., Vitting-Serup, K., Lim, Y. C., Elbæk, K. J., Pedersen, H., Vardouli, L., Jensen, K. E., Skjoth-Rasmussen, J., Brennum, J., Tuckova, L., Strauss, R., Dinant, C., Bartek, J. & Hamerlik, P., 2020, In: Nature Communications. 11, 14 p., 4709.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera

    Oeyen, J. P., Baa-Puyoulet, P., Benoit, J. B., Beukeboom, L. W., Bornberg-Bauer, E., Buttstedt, A., Calevro, F., Cash, E. I., Chao, H., Charles, H., Chen, M-J. M., Childers, C., Cridge, A. G., Dearden, P., Dinh, H., Doddapaneni, H. V., Dolan, A., Donath, A., Dowling, D., Dugan, S. & 65 others, Duncan, E., Elpidina, E. N., Friedrich, M., Geuverink, E., Gibson, J. D., Grath, S., Grimmelikhuijzen, Cornelis (Cok), Große-Wilde, E., Gudobba, C., Han, Y., Hansson, B. S., Hauser, Frank, Hughes, D. S. T., Ioannidis, P., Jacquin-Joly, E., Jennings, E. C., Jones, J. W., Klasberg, S., Lee, S. L., Lesný, P., Lovegrove, M., Martin, S., Martynov, A. G., Mayer, C., Montagné, N., Moris, V. C., Munoz-Torres, M., Murali, S. C., Muzny, D. M., Oppert, B., Parisot, N., Pauli, T., Peters, R. S., Petersen, M., Pick, C., Persyn, E., Podsiadlowski, L., Poelchau, M. F., Provataris, P., Qu, J., Reijnders, M. J. M. F., Marcus von Reumont, B., Rosendale, A. J., Simao, F. A., Skelly, J., Sotiropoulos, A. G., Stahl, A. L., Sumitani, M., Szuter, E. M., Tidswell, O., Tsitlakidis, E., Vedder, L., Waterhouse, R. M., Werren, J. H., Wilbrandt, J., Worley, K. C., Yamamoto, D. S., van de Zande, L., Zdobnov, E. M., Ziesmann, T., Gibbs, R. A., Richards, S., Hatakeyama, M., Misof, B. & Niehuis, O., 2020, In: Genome Biology and Evolution. 12, 7, p. 1099-1118 evaa106.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    SARS-CoV2-mediated suppression of NRF2-signaling reveals potent antiviral and anti-inflammatory activity of 4-octyl-itaconate and dimethyl fumarate

    Olagnier, D. P. C., Farahani, E., Jensen, J. T., Blay Cadanet, J., Herengt, A. A. P. V., Idorn, M., Schneider Hait, A. I., Hernaez, B., Knudsen, A., Iversen, M. B., Schilling, M., Jørgensen, S. E., Thomsen, M. M., Reinert, L. S., Lappe, M., Hoang, H. D., Gilchrist, V. H., Hansen, A. L., Ottosen, R., Nielsen, C. G. & 18 others, Møller, C., van der Horst, D., Peri, S., Balachandran, S., Huang, J., Jakobsen, M., Svenningsen, E. B., Poulsen, T. B., Bartsch, L., Thielke, A. L., Luo, Y., Alain, T., Rehwinkel, J., Alcamí, A., Hiscott, J., Mogensen, T. H., Paludan, S. R. & Holm, C. K., 2020, In: Nature Communications. 11, 12 p., 4938.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Phylogenetic origins and family classification of typhuloid fungi, with emphasis on Ceratellopsis, Macrotyphula and Typhula (Basidiomycota)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H. & Hansen, K., 2020, In: Studies in Mycology. 96, p. 155-184 30 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The impact of urea on toxic diatoms – Potential effects of fertilizer silo breakdown on a Pseudo-nitzschia bloom

    Olesen, Anna Karoline Junker, Harðardóttir, S., Daugbjerg, Niels, Andersen, P., Lyngsgaard, M., Krock, B. & Lundholm, Nina, 2020, In: Harmful Algae. 95, 12 p., 101817.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The environmental contribution to the dissemination of carbapenem and (fluoro)quinolone resistance genes by discharged and reused wastewater effluents: The role of cellular and extracellular DNA

    Oliveira, M., Nunes, M., Barreto Crespo, M. T. & Silva, A. F., 2020, In: Water Research. 182, 13 p., 116011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) [version 1; peer review: 1 approved, 3 approved with reservations]

    Orengo, C., Velankar, S., Wodak, S., Zoete, V., Bonvin, A. M. J. J., Elofsson, A., Feenstra, K. A., Gerloff, D. L., Hamelryck, T., Hancock, J. M., Helmer-Citterich, M., Hospital, A., Orozco, M., Perrakis, A., Rarey, M., Soares, C., Sussman, J. L., Thornton, J. M., Tuffery, P., Tusnady, G. & 3 others, Wierenga, R., Salminen, T. & Schneider, B., 2020, In: F1000Research. 9, 27 p., 278.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    How to learn from inconsistencies: Integrating molecular simulations with experimental data

    Orioli, S., Nørgrd Larsen, Andreas, Bottaro, S. & Lindorff-Larsen, Kresten, 2020, Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly. Strodel, B. & Barz, B. (eds.). Academic Press, p. 123-176 54 p. (Progress in Molecular Biology and Translational Science, Vol. 170).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  49. Published

    The effect of diabetes and the common diabetogenic TBC1D4 p.Arg684Ter variant on cardiovascular risk in Inuit in Greenland

    Overvad, M., Diaz, L. J., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Senftleber, N., Grarup, Niels, Hansen, Torben & Jørgensen, M. E., 2020, In: Scientific Reports. 10, 9 p., 22081.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age

    Padilha, M., Brejnrod, A., Danneskiold-Samsøe, Niels Banhos, Hoffmann, C., Iaucci, J. D. M., Cabral, V. P., Xavier-Santos, D., Taddei, C. R., Kristiansen, Karsten & Saad, S. M. I., 2020, In: Nutrients. 12, 4, 16 p., 1081.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Modelled population growth based on reproduction differs from life tables based on age determination in Danish raccoon dogs (Nyctereutes procyonoides)

    Pagh, S., Buxbom, J., Chriél, M., Pertoldi, C., Pedersen, Jes Søe & Hansen, M. S., 2020, In: Mammal Research. 65, 2, p. 215-222 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Population genetics reveals the selection of honey bee aggression behaviour

    Pan, H., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  53. Published

    Drivers of plant traits that allow survival in wetlands

    Pan, Y., Cieraad, E., Clarkson, B. R., Colmer, T. D., Pedersen, Ole, Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 2020, In: Functional Ecology. 34, 5, p. 956-967 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Global patterns of the leaf economics spectrum in wetlands

    Pan, Y., Cieraad, E., Armstrong, J., Armstrong, W., Clarkson, B. R., Colmer, T. D., Pedersen, Ole, Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 2020, In: Nature Communications. 11, 9 p., 4519.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Production of Intrinsically Disordered Proteins for Biophysical Studies: Tips and Tricks

    Pedersen, Christian Parsbæk, Seiffert, P., Brakti, Inna & Bugge, K., 2020, Intrinsically Disordered Proteins: Methods and Protocols. Kragelund, B. B. & Skriver, K. (eds.). Humana Press, p. 195-209 15 p. (Methods in Molecular Biology, Vol. 2141).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  56. Published

    Foraging deeply: Depth‐specific plant nitrogen uptake in response to climate‐induced N‐release and permafrost thaw in the High Arctic

    Pedersen, Emily Pickering, Elberling, Bo & Michelsen, Anders, 2020, In: Global Change Biology. 26, 11, p. 6523-6536 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Replication Protein A (RPA) Mediates Radio-Resistance of Glioblastoma Cancer Stem-Like Cells

    Pedersen, H., Obara, E. A. A., Elbæk, K. J., Vitting-Serup, K. & Hamerlik, P., 2020, In: International Journal of Molecular Sciences. 21, 5, 13 p., 1588.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Aquatic plants are influenced by the surrounding landscape

    Pedersen, Ole, 2020, In: TheScienceBreaker. 6, 3

    Research output: Contribution to journal › Letter › Research

  59. Published

    Jack of all trades - C4 photosynthesis, CAM and HCO3- use in the same tissue: A commentary on: 'Structural basis for C4 photosynthesis without Kranz anatomy in leaves of the submerged freshwater plant Ottelia alismoides'

    Pedersen, Ole, 2020, In: Annals of Botany. 125, 6, p. iv-vi

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Microsensors in plant biology: in vivo visualization of inorganic analytes with high spatial and/or temporal resolution

    Pedersen, Ole, Revsbech, N. P. & Shabala, S., 2020, In: Journal of Experimental Botany. 71, 14, p. 3941-3954

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Evidence of non-structural carbohydrates-mediated response to flooding and salinity in Limonium narbonense and Salicornia fruticosa

    Pellegrini, Elisa, Forlani, G., Boscutti, F. & Casolo, V., 2020, In: Aquatic Botany. 166, 8 p., 103265.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Anti-CRISPR Proteins in Archaea

    Peng, Xu, Mayo-Muñoz, D., Bhoobalan, Yuvaraj & Martinez Alvarez, Laura, 2020, In: Trends in Microbiology. 28, 11, p. 913-921 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  63. Published

    Comparative Analysis of Sample Extraction and Library Construction for Shotgun Metagenomics

    Peng, Z., Zhu, X., Wang, Z., Yan, X., Wang, G., Tang, M., Jiang, A. & Kristiansen, Karsten, 2020, In: Bioinformatics and Biology Insights. 14, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Comparative Studies of NGS Assays and Sequencing Technologies

    Peng, Z., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 114 p.

    Research output: Book/Report › Ph.D. thesis › Research

  65. Published

    Latitudinal, sex and inter-specific differences in mercury and other trace metal concentrations in Adélie and Emperor penguins in the Ross Sea, Antarctica

    Pilcher, N., Gaw, S., Eisert, R., Horton, T. W., Gormley, A. M., Cole, T. L. & Lyver, P. O. B., 2020, In: Marine Pollution Bulletin. 154, 9 p., 111047.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Plasmids, CRISPR-Cas and Anti-CRIPSRs: Uncovering the secret lives of mobile genetic elements

    Pinilla Redondo, Rafael, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 217 p.

    Research output: Book/Report › Ph.D. thesis › Research

  67. Published

    Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements

    Pinilla Redondo, Rafael, Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, Søren Johannes, Fineran, P. C. & Bondy-Denomy, J., 2020, In: Nature Communications. 11, 11 p., 5652.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Floral Scent Composition and Fine-Scale Timing in Two Moth-Pollinated Hawaiian Schiedea (Caryophyllaceae)

    Powers, J. M., Seco, Roger, Faiola, C. L., Sakai, A. K., Weller, S. G., Campbell, D. R. & Guenther, A., 2020, In: Frontiers in Plant Science. 11, 16 p., 1116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Identification and validation of 174 COVID-19 vaccine candidate epitopes reveals low performance of common epitope prediction tools

    Prachar, Marek, Justesen, S., Steen-Jensen, D. B., Thorgrimsen, S., Jurgons, E., Winther, Ole & Bagger, F. O., 2020, In: Scientific Reports. 10, 8 p., 20465.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Origin and impact of circular DNA on the eukaryotic genomes

    Prada Luengo, Inigo, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 169 p.

    Research output: Book/Report › Ph.D. thesis › Research

  72. Published

    Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae

    Prada Luengo, Inigo, Møller, H. D., Henriksen, Rasmus Henrik Amund, Gao, Q., Larsen, C. E., Alizadeh, S., Maretty, L., Houseley, J. & Regenberg, Birgitte, 2020, In: Nucleic Acids Research. 48, 14, p. 7883-7898 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Ribosome hibernation and its role in the maintenance of the translation machinery: How hibernation factors of E. coli protect ribosomes in adverse conditions

    Prossliner, T., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 176 p.

    Research output: Book/Report › Ph.D. thesis › Research

  74. Published

    Morphological traits predict host-tree specialization in wood-inhabiting fungal communities

    Purhonen, J., Ovaskainen, O., Halme, P., Komonen, A., Huhtinen, S., Kotiranta, H., Læssøe, Thomas & Abrego, N., 2020, In: Fungal Ecology. 46, 8 p., 100863.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

    Põlme, S., Abarenkov, K., Nilsson, R. H., Lindahl, B. D., Clemmensen, K. E., Kauserud, H., Nguyen, N., Kjøller, R., Bates, S. T., Baldrian, P., Frøslev, T. G., Adojaan, K., Vizzini, A., Suija, A., Pfister, D., Baral, H. O., Järv, H., Madrid, H., Nordén, J., Liu, J-K. & 108 others, Pawlowska, J., Põldmaa, K., Pärtel, K., Runnel, K., Hansen, K., Larsson, K., Hyde, K. D., Sandoval-Denis, M., Smith, M. E., Toome-Heller, M., Wijayawardene, N. N., Menolli, N., Reynolds, N. K., Drenkhan, R., Maharachchikumbura, S. S. N., Gibertoni, T. B., Læssøe, Thomas, Davis, W., Tokarev, Y., Corrales, A., Soares, A. M., Agan, A., Machado, A. R., Argüelles-Moyao, A., Detheridge, A., de Meiras-Ottoni, A., Verbeken, A., Dutta, A. K., Cui, B., Pradeep, C. K., Marín, C., Stanton, D., Gohar, D., Wanasinghe, D. N., Otsing, E., Aslani, F., Griffith, G. W., Lumbsch, T. H., Grossart, H., Masigol, H., Timling, I., Hiiesalu, I., Oja, J., Kupagme, J. Y., Geml, J., Alvarez-Manjarrez, J., Ilves, K., Loit, K., Adamson, K., Nara, K., Küngas, K., Rojas-Jimenez, K., Bitenieks, K., Irinyi, L., Nagy, L. G., Soonvald, L., Zhou, L., Wagner, L., Aime, M. C., Öpik, M., Mujica, M. I., Metsoja, M., Ryberg, M., Vasar, M., Murata, M., Nelsen, M. P., Cleary, M., Samarakoon, M. C., Doilom, M., Bahram, M., Hagh-Doust, N., Dulya, O., Johnston, P., Kohout, P., Chen, Q., Tian, Q., Nandi, R., Amiri, R., Perera, R. H., Chikowski, R. D. S., Mendes-Alvarenga, R. L., Garibay-Orijel, R., Gielen, R., Phookamsak, R., Jayawardena, R. S., Rahimlou, S., Karunarathna, S. C., Tibpromma, S., Brown, S. P., Sepp, S., Mundra, S., Luo, Z., Bose, T., Vahter, T., Netherway, T., Yang, T., May, T., Varga, T., Li, W., Coimbra, V. R. M., de Oliveira, V. R. T., de Lima, V. X., Mikryukov, V. S., Lu, Y., Matsuda, Y., Miyamoto, Y., Kõljalg, U. & Tedersoo, L., 2020, In: Fungal Diversity. 105, 1, p. 1-16 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Functional annotation of human long noncoding RNAs via molecular phenotyping

    Ramilowski, J. A., Yip, C. W., Agrawal, S., Chang, J-C., Ciani, Y., Kulakovskiy, I. V., Mendez, M., Ooi, J. L. C., Ouyang, J. F., Parkinson, N., Petri, A., Roos, L., Severin, J., Yasuzawa, K., Abugessaisa, I., Akalin, A., Antonov, I. V., Arner, E., Bonetti, A., Bono, H. & 96 others, Borsari, B., Brombacher, F., Cameron, C. J. F., Cannistraci, C. V., Cardenas, R., Cardon, M., Chang, H., Dostie, J., Ducoli, L., Favorov, A., Fort, A., Garrido, D., Gil, N., Gimenez, J., Guler, R., Handoko, L., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, K., Hayatsu, N., Heutink, P., Hirose, T., Imada, E. L., Itoh, M., Kaczkowski, B., Kanhere, A., Kawabata, E., Kawaji, H., Kawashima, T., Kelly, S. T., Kojima, M., Kondo, N., Koseki, H., Kouno, T., Kratz, A., Kurowska-Stolarska, M., Kwon, A. T. J., Leek, J., Lennartsson, A., Lizio, M., Lopez-Redondo, F., Luginbühl, J., Maeda, S., Makeev, V. J., Marchionni, L., Medvedeva, Y. A., Minoda, A., Müller, F., Muñoz-Aguirre, M., Murata, M., Nishiyori, H., Nitta, K. R., Noguchi, S., Noro, Y., Nurtdinov, R., Okazaki, Y., Orlando, V., Paquette, D., Parr, C. J. C., Rackham, O. J. L., Rizzu, P., Martinez, D. F. S., Sandelin, Albin Gustav, Sanjana, P., Semple, C. A. M., Shibayama, Y., Sivaraman, D. M., Suzuki, T., Szumowski, S. C., Tagami, M., Taylor, M. S., Terao, C., Thodberg, Malte, Thongjuea, S., Tripathi, V., Ulitsky, I., Verardo, R., Vorontsov, I. E., Yamamoto, C., Young, R. S., Baillie, J. K., Forrest, A. R. R., Guigó, R., Hoffman, M. M., Hon, C. C., Kasukawa, T., Kauppinen, S., Kere, J., Lenhard, B., Schneider, C., Suzuki, H., Yagi, K., de Hoon, M. J. L., Shin, J. W. & Carninci, P., 2020, In: Genome Research. 30, 7, p. 1060-1072 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Arctic soil water chemistry in dry and wet tundra subject to snow addition, summer warming and herbivory simulation

    Rasmussen, Laura Helene, Michelsen, Anders, Ladegaard-Pedersen, P., Nielsen, C. S. & Elberling, Bo, 2020, In: Soil Biology and Biochemistry. 141, 13 p., 107676.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Slope hydrology and permafrost: The effect of snowmelt N transport on downslope ecosystem

    Rasmussen, Laura Helene, Ambus, Per Lennart, Zhang, Wenxin, Jansson, P. E., Michelsen, Anders & Elberling, Bo, 1 May 2020. 2 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  79. Published

    Ecological succession in the vaginal microbiota during pregnancy and birth

    Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Dynamic CO2 and pH levels in coastal, estuarine, and inland waters: theoretical and observed effects on harmful algal blooms

    Raven, J. A., Gobler, C. J. & Hansen, Per Juel, 2020, In: Harmful Algae. 91, 13 p., 101594.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Decomposition of Organic Matter in Caves

    Ravn, N. M. R., Michelsen, Anders & Reboleira, Ana Sofia, 2020, In: Frontiers in Ecology and Evolution. 8, 12 p., 554651.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Arctic soil carbon turnover controlled by experimental snow addition, summer warming and shrub removal

    Ravn, N. R., Elberling, Bo & Michelsen, Anders, 2020, In: Soil Biology and Biochemistry. 142, 12 p., 107698.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Urban birdsongs: higher minimum song frequency of an urban colonist persists in a common garden experiment

    Reichard, D. G., Atwell, J. W., Pandit, M. M., Cardoso, G. C., Price, T. D. & Ketterson, E. D., 2020, In: Animal Behaviour. 170, p. 33-41 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Sprifermin (rhFGF18) versus vehicle induces a biphasic process of extracellular matrix remodeling in human knee OA articular cartilage ex vivo

    Reker, D., Siebuhr, A. S., Thudium, C. S., Gantzel, T., Ladel, C., Michaelis, M., Aspberg, A., Berchtold, Martin Werner, Karsdal, M. A., Gigout, A. & Bay-Jensen, A. C., 2020, In: Scientific Reports. 10, 9 p., 6011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis

    Riber, Leise & Løbner-Olesen, Anders, 2020, In: Molecular Microbiology. 114, 6, p. 906-919

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Insect Herbivory Strongly Modifies Mountain Birch Volatile Emissions

    Rieksta, Jolanta, Li, Tao, Junker, R. R., Jepsen, J. U., Ryde, I. & Rinnan, Riikka, 2020, In: Frontiers in Plant Science. 11, p. 1-12 558979.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Beta-1 and Not Beta-3 Adrenergic Receptors May Be the Primary Regulator of Human Brown Adipocyte Metabolism

    Riis-Vestergaard, M. J., Richelsen, B., Bruun, J. M., Li, W., Hansen, Jacob B. & Pedersen, S. B., 2020, In: The Journal of clinical endocrinology and metabolism. 105, 4, 12 p., dgz298.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Separating direct and indirect effects of rising temperatures on biogenic volatile emissions in the Arctic

    Rinnan, Riikka, Iversen, Lars Lønsmann, Tang, Jing, Vedel-Petersen, I., Schollert, M. & Schurgers, Guy, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 51, p. 32476-32483 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Soil Uptake of Volatile Organic Compounds: Ubiquitous and Underestimated?

    Rinnan, Riikka & Albers, C. N., 2020, In: Journal of Geophysical Research: Biogeosciences. 125, 6, 5 p., e2020JG005773.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  90. Published

    Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells

    Rodriguez, Eleazar, Chevalier, J., Olsen, J., Ansbøl, J., Kapousidou, V., Zuo, Zhangli Thomsen, Svenning, S., Loefke, C., Koemeda, S., Drozdowskyj, P. S., Jez, J., Durnberger, G., Kuenzl, F., Schutzbier, M., Mechtler, K., Ebstrup, E. N., Lolle, S., Dagdas, Y. & Petersen, Morten, 2020, In: EMBO Journal. 39, 4, 11 p., e103315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Pyrazine ring-based Na+/H+ exchanger (NHE) inhibitors potently inhibit cancer cell growth in 3D culture, independent of NHE1

    Rolver, M. G., Elingaard-Larsen, L. O., Andersen, Anne Poder, Counillon, L. & Pedersen, Stine Helene Falsig, 2020, In: Scientific Reports. 10, 17 p., 5800.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Evolutionary Study of the Crassphage Virus at Gene Level

    Rossi, A., Treu, L., Toppo, S., Zschach, Henrike, Campanaro, S. & Dutilh, B. E., 2020, In: Viruses. 12, 9, 13 p., 1035.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    The responses of moss-associated nitrogen fixation and belowground microbial community to chronic Mo and P supplements in subarctic dry heaths

    Rousk, Kathrin & Rousk, J., 2020, In: Plant and Soil. 451, 1-2, p. 261-276 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci

    Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    alpha M-Conotoxin MIIIJ Blocks Nicotinic Acetylcholine Receptors at Neuromuscular Junctions of Frog and Fish

    Rybin, M. J., O'Brien, H., Ramiro, Iris Bea L. , Azam, L., McIntosh, J. M., Olivera, B. M., Safavi-Hemami, H. & Yoshikami, D., 2020, In: Toxins. 12, 3, 29 p., 197.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Unravelling interspecies interactions across heterogeneities in complex biofilm communities

    Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  97. Published

    Scratching the surface: native mass spectrometry of peripheral membrane protein complexes

    Sahin, Cagla, Reid, D. J., Marty, M. T. & Landreh, M., 2020, In: Biochemical Society Transactions. 48, 2, p. 547-558

    Research output: Contribution to journal › Review › Research › peer-review

  98. Published

    Draft genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

    Sahu, S. K., Liu, M., Yssel, A., Kariba, R., Muthemba, S., Jiang, S., Song, B., Hendre, P. S., Muchugi, A., Jamnadass, R., Kao, S., Featherston, J., Zerega, N. J. C., Xu, X., Yang, H., Van Deynze, A., Van de Peer, Y., Liu, X. & Liu, Huan, 2020, In: Genes. 11, 1, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Faster nitrogen cycling and more fungal and root biomass in cold ecosystems under experimental warming: a meta-analysis

    Salazar, A., Rousk, Kathrin, Jónsdóttir, I. S., Bellenger, J. & Andrésson, Ó. S., 2020, In: Ecology. 101, 2, 13 p., e02938.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Intrinsic Disorder in Plant Transcription Factor Systems: Functional Implications

    Salladini, Edoardo, Jørgensen, M. L. M., Theisen, Frederik Friis & Skriver, Karen, 2020, In: International Journal of Molecular Sciences (Online). 21, 24, 35 p., 9755.

    Research output: Contribution to journal › Review › Research › peer-review

  101. Published

    Fiskeskæl fra 1930 fik laksen tilbage i Skjern Å

    Sand-Jensen, Kaj & Schou, J. C., 19 Jan 2020, In: Avisen Danmark. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

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