Department of Biology

 

 
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  1. 2021
  2. Published

    A global perspective on the application of riverine macroinvertebrates as biological indicators in Africa, South-Central America, Mexico and Southern Asia

    Eriksen, T. E., Brittain, J. E., Søli, G., Jacobsen, Dean, Goethals, P. & Friberg, N., 2021, In: Ecological Indicators. 126, 17 p., 107609.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Ecological condition, biodiversity and major environmental challenges in a tropical river network in the Bago District in South-central Myanmar: First insights to the unknown

    Eriksen, T. E., Friberg, N., Brittain, J. E., Søli, G., Ballot, A., Årstein-Eriksen, E., Blakseth, T. A. & Veiteberg Braaten, H. F., 2021, In: Limnologica. 86, 12 p., 125835.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Binding Revisited - Avidity in Cellular Function and Signaling

    qrc243, qrc243 & Teilum, Kaare, 2021, In: Frontiers in Molecular Biosciences. 7, 13 p., 615565.

    Research output: Contribution to journal › Review › Research › peer-review

  5. Published

    Catalogue of lichens (and some related fungi) of Navarino Island, Cape Horn Biosphere Reserve, Chile

    Etayo, J., Sancho, L. G., Gómez-Bolea, A., Søchting, Ulrik, Aguirre, F. & Rozzi, R., 2021, In: Anales del Instituto de la Patagonia. 49, p. 1-110

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Wood Ash Application Reduces Bryophyte Cover and Changes Species Composition in a Norway Spruce (Picea abies) Plantation

    Ethelberg-Findsen, D., Rønn, Regin & Ekelund, Flemming, 2021, In: Forests. 12, 2, 14 p., 178.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Temporal and spatial dynamics of arthropod groups in terrestrial subsurface habitats in central Portugal

    Eusébio, R. P., Enghoff, Henrik, Solodovnikov, Alexey, Michelsen, Anders, Barranco, P., Salgado, J. M., Sendra, A. & Reboleira, Ana Sofia, 2021, In: Zoology. 147, 9 p., 125931.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    AutoCNV: a semiautomatic CNV interpretation system based on the 2019 ACMG/ClinGen Technical Standards for CNVs

    Fan, C., Wang, Z., Sun, Y., Sun, J., Liu, X., Kang, L., Xu, Y., Yang, M., Dai, W., Song, L., Wei, X., Xiang, J., Huang, H., Zhou, M., Zeng, F., Huang, L., Xu, Z. & Peng, Z., 2021, In: BMC Genomics. 22, 12 p., 721.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The Clausena lansium (Wampee) genome reveal new insights into the carbazole alkaloids biosynthesis pathway

    Fan, Y., Sahu, S. K., Yang, T., Mu, W., Wei, J., Cheng, L., Yang, J., Liu, J., Zhao, Y., Lisby, Michael & Liu, Huan, 2021, In: Genomics. 113, 6, p. 3696-3704 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Metagenomic data mining: Benchmarking and developing technologies to identify biomarkers from large metagenomics data sets

    Fang, Chao, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 96 p.

    Research output: Book/Report › Ph.D. thesis › Research

  11. Published

    Identification for Genetic Mechanism of Flightlessness in Penguins

    Fang, Q., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 243 p.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity

    Farias, P., Francisco, R., Maccario, Lorrie, Herschend, J., Piedade, A. P., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Frontiers in Microbiology. 12, 15 p., 718963.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Reducing the rate of psychiatric re-admissions in bipolar disorder using smartphones - The RADMIS trial

    Faurholt-Jepsen, M., Lindbjerg Tønning, M., Fros, M., Martiny, Klaus, Tuxen, N., Rosenberg, N., Busk, J., Winther, Ole, Thaysen-Petersen, D., Aamund, K. A., Tolderlund, L., Bardram, J. E. & Kessing, Lars Vedel, 2021, In: Acta Psychiatrica Scandinavica. 143, 5, p. 453-465 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas

    Fernandez-Gnecco, G., Smalla, K., Maccario, Lorrie, Sørensen, Søren Johannes, Barbieri, P., Consolo, V. F., Covacevich, F. & Babin, D., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Development and validation of new methods for measuring predation rates in mixoplanktonic protists

    Ferreira, G. D., Calbet, A., Mansour, J. S., Not, F., Medic, Nikola, Hansen, Per Juel, Romano, F., Pitta, P., Flynn, K. J. & Mitra, A., 2021, Novel Approaches For Investigating Marine Planktonic Mixotrophy. Mitra, A., Flynn, K. J., Anestis, K., Mansour, J. S., Ferreira, G. D. & Calbet, A. (eds.). Zenodo, 69 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  16. Published

    Mixoplankton interferences in dilution grazing experiments

    Ferreira, G. D., Romano, F., Medic, Nikola, Pitta, P., Hansen, Per Juel, Flynn, K. J., Mitra, A. & Calbet, A., 2021, In: Scientific Reports. 11, 16 p., 23849.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

    Feuerborn, T. R., Carmagnini, A., Losey, R. J., Nomokonova, T., Askeyev, A., Askeyev, I., Askeyev, O., Antipina, E. E., Appelt, M., Bachura, O. P., Beglane, F., Bradley, D. G., Daly, K. G., Gopalakrishnan, S., Gregersen, K. M., Guo, C., Gusev, A. V., Jones, C., Kosintsev, P. A., Kuzmin, Y. V. & 17 others, Mattiangeli, V., Perri, A. R., Plekhanov, A. V., Ramos Madrigal, Jazmin, Schmidt, A. L., Shaymuratova, D., Smith, O., Yavorskaya, L. V., KU, thw266, Willerslev, Eske, Meldgaard, Morten, Gilbert, M Thomas P, Larson, G., Dalén, L., Hansen, Anders Johannes, Sinding, Mikkel Holger Strander & Frantz, L., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 39, e2100338118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Transcriptional Profiles Reveal Deregulation of Lipid Metabolism and Inflammatory Pathways in Neurons Exposed to Palmitic Acid

    Flores-León, M., Alcaraz, N., Pérez-Domínguez, M., Torres-Arciga, K., Rebollar-Vega, R., De la Rosa-Velázquez, I. A., Arriaga-Canon, C., Herrera, L. A., Arias, C. & González-Barrios, R., 2021, In: Molecular Neurobiology. 58, 9, p. 4639-4651 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Tumor Clearance and Immune Cell Recruitment in UV-Induced Murine Squamous Cell Carcinoma Exposed to Ablative Fractional Laser and Imiquimod Treatment

    Fontenete, S., Lerche, Catharina Margrethe, Paasch, U., Perez-Moreno, Mirna, Olesen, U. H. & Hædersdal, Merete, 2021, In: Lasers in Surgery and Medicine. 53, 9, p. 1227-1237 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The genetic impact of an Ebola outbreak on a wild gorilla population

    Fontsere, C., Frandsen, P., Hernandez-Rodriguez, J., Niemann, Jonas, Scharff-Olsen, Camilla Hjorth, Vallet, D., Le Gouar, P., Ménard, N., Navarro, A., Siegismund, Hans Redlef, Hvilsom, C., Gilbert, M Thomas P, Kuhlwilm, M., Hughes, D. & Marques-Bonet, T., 2021, In: BMC Genomics. 22, 12 p., 735.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Effects of x-ray free-electron laser pulse intensity on the Mn Kβ1,3 x-ray emission spectrum in photosystem II-A case study for metalloprotein crystals and solutions

    Fransson, T., Alonso-Mori, R., Chatterjee, R., Cheah, M. H., Ibrahim, M., Hussein, R., Zhang, M., Fuller, F., Gul, S., Kim, I-S., Simon, P. S., Bogacz, I., Makita, H., De Lichtenberg, C., Song, S., Batyuk, A., Sokaras, D., Massad, R., Doyle, M., Britz, A. & 7 others, Weninger, C., Zouni, A., Messinger, J., Yachandra, V. K., Yano, J., Kern, J. & Bergmann, U., 2021, In: Structural Dynamics. 8, 6, 14 p., 064302.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Contingency and determinism in the evolution of bird song sound frequency

    Friis, J. I., Dabelsteen, Torben & Cardoso, G. C., 2021, In: Scientific Reports. 11, 9 p., 11600.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The Allometry of Sound Frequency Bandwidth in Songbirds

    Friis, J. I., Sabino, J., Santos, P., Dabelsteen, Torben & Cardoso, G. C., 2021, In: American Naturalist. 197, 5, p. 607-614 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Activating the Cpx response induces tolerance to antisense PNA delivered by an arginine-rich peptide in Escherichia coli

    Frimodt-Møller, Jakob, Koulouktsis, A., Charbon, Godefroid, Otterlei, M., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Molecular Therapy - Nucleic Acids. 25, p. 444-454 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Dimensions of invasiveness: Links between local abundance, geographic range size, and habitat breadth in Europe's alien and native floras

    Fristoe, T. S., Chytrý, M., Dawson, W., Essl, F., Heleno, R., Kreft, H., Maurel, N., Pergl, J., Pyšek, P., Seebens, H., Weigelt, P., Vargas, P., Yang, Q., Attorre, F., Bergmeier, E., Bernhardt-Römermann, M., Biurrun, I., Boch, S., Bonari, G., Botta-Dukát, Z. & 39 others, Bruun, Hans Henrik, Byun, C., Carni, A., Carranza, M. L., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cušterevska, R., De Ronde, I., Dengler, J., Golub, V., Haveman, R., Hough-Snee, N., Jandt, U., Jansen, F., Kuzemko, A., Küzmic, F., Lenoir, J., MacAnovic, A., Marcenò, C., Martin, A. R., Michaletz, S. T., Mori, A. S., Niinemets, Ü., Peterka, T., Pielech, R., Rašomavicius, V., Rusina, S., Dias, A. S., Sibíková, M., Silc, U., Stanisci, A., Jansen, S., Svenning, J., Swacha, G., Van Der Plas, F., Vassilev, K. & Van Kleunen, M., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 22, 11 p., e2021173118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation

    Frugone, M. J., Cole, T. L., López, M. E., Clucas, G., Matos-Maraví, P., Lois, N. A., Pistorius, P., Bonadonna, F., Trathan, P., Polanowski, A., Wienecke, B., Raya-Rey, A., Pütz, K., Steinfurth, A., Bi, K., Wang-Claypool, C. Y., Waters, J. M., Bowie, R. C. K., Poulin, E. & Vianna, J. A., 2021, In: Diversity and Distributions. 27, 11, p. 2277-2296 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M., Rasmussen, M., Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C., Kinalis, S., Madsen, M., Yde, C., Rønn, O. L., Marvig, R., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, bioRxiv, 29 p.

    Research output: Working paper › Preprint › Research

  28. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M. H., Rasmussen, Malthe Sebro, Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C. B., Kinalis, S., Madsen, M. B., Kodama, M., Demircan, G. S., Simonyan, A., Yde, C. W., Olsen, L. R., Marvig, R. L., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, In: Cancers. 13, 24, 6283.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity

    Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Comprehensive analysis of genetic and clinical characteristics of 30 patients with X-linked juvenile retinoschisis in China

    Gao, F., Dong, J., Wang, D., Chen, F., Hu, F., Chang, Q., Xu, P., Liu, W., Li, J., Huang, Y., Wu, J. & Xu, G., 2021, In: Acta Ophthalmologica. 99, 4, p. e470-e479 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Frequency and phenotypic characteristics of RPE65 mutations in the Chinese population

    Gao, F., Wang, D., Li, J., Hu, F., Xu, P., Chen, F., Qi, Y., Liu, W., Li, W., Zhang, S., Chang, Q., Xu, G. & Wu, J., 2021, In: Orphanet Journal of Rare Diseases. 16, 9 p., 174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Prevalence and genetic-phenotypic characteristics of patients with USH2A mutations in a large cohort of Chinese patients with inherited retinal disease

    Gao, F., Wang, D., Chen, F., Sun, H., Hu, F., Xu, P., Li, J., Liu, W., Qi, Y., Li, W., Wang, M., Zhang, S., Xu, G., Chang, Q. & Wu, J., 2021, In: British Journal of Ophthalmology. 105, 1, p. 87-92 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The maternal gut microbiome during pregnancy and offspring allergy and asthma

    Gao, Y., Nanan, R., Macia, L., Tan, J., Sominsky, L., Quinn, T. P., O'Hely, M., Ponsonby, A., Tang, M. L. K., Collier, F., Strickland, D. H., Dhar, P., Brix, S., Phipps, S., Sly, P. D., Ranganathan, S., Stokholm, Jakob, Kristiansen, Karsten, Gray, L. E. K. & Vuillermin, P., 2021, In: Journal of Allergy and Clinical Immunology. 148, 3, p. 669-678

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Vicariance followed by secondary gene flow in a young gazelle species complex

    Garcia Erill, Genís, Kjær, M. M., Albrechtsen, Anders, Siegismund, Hans Redlef & Heller, Rasmus, 2021, In: Molecular Ecology. 30, 2, p. 528-544

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Evidence for large microbial-mediated losses of soil carbon under anthropogenic warming

    García-Palacios, P., Crowther, T. W., Dacal, M., Hartley, I. P., Reinsch, S., Rinnan, Riikka, Rousk, J., van den Hoogen, J., Ye, J. & Bradford, M. A., 2021, In: Nature Reviews Earth & Environment. 2, 7, p. 507-517

    Research output: Contribution to journal › Review › Research › peer-review

  36. Published

    Computational methods for chromosome-scale haplotype reconstruction

    Garg, S., 2021, In: Genome Biology. 22, 24 p., 101.

    Research output: Contribution to journal › Review › Research › peer-review

  37. Published

    Have the eyes of bioluminescent scale worms adapted to see their own light? A comparative study of eyes and vision in Harmothoe imbricata and Lepidonotus squamatus

    Garm, Anders Lydik, Simonsen, S. H., Mendoza-González, P. & Worsaae, Katrine, 2021, In: Journal of Experimental Biology. 224, 14, 10 p., jeb242501.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Geographical sampling bias on the assessment of endemism areas for marine meiobenthic fauna

    Garraffoni, A., Sørensen, Martin Vinther, Worsaae, Katrine, Di Domenico, M., Sales, L. P., Santos, J. & Lourenço, A., 2021, In: Cladistics. 37, 5, p. 571-585 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms

    Gastineau, R., Hansen, G., Poulin, M., Lemieux, C., Turmel, M., Bardeau, J-F., Leignel, V., Hardivillier, Y., Morançais, M., Fleurence, J., Gaudin, P., Méléder, V., Cox, E. J., Davidovich, N. A., Davidovich, O. I., Witkowski, A., Kaczmarska, I., Ehrman, J. M., Onís, E. S., Quintana, A. M. & 11 others, Mucko, M., Mordret, S., Sarno, D., Jacquette, B., Falaise, C., Séveno, J., Lindquist, N. L., Kemp, P. S., Eker-Develi, E., Konucu, M. & Mouget, J., 2021, In: Biology. 10, 4, 27 p., 328.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

    Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Bsgatlas: A unified bacillus subtilis genome and transcriptome annotation atlas with enhanced information access

    Geissler, Adrian Sven, Anthon, Christian, Alkan, F., González-Tortuero, E., Poulsen, L. D., Kallehauge, T. B., Breüner, A., Seemann, Ernst Stefan, Vinther, Jeppe & Gorodkin, Jan, 2021, In: Microbial Genomics. 7, 2, 17 p., 000524.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Phylogeny Reveals Novel HipA-Homologous Kinase Families and Toxin-Antitoxin Gene Organizations

    Gerdes, K., Bærentsen, R. & Brodersen, D. E., 2021, In: mBio. 12, 3, 14 p., e01058-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Variance in within-pair reproductive success influences the opportunity for selection annually and over the lifetimes of males in a multibrooded songbird

    Germain, Ryan Ross, Hallworth, M. T., Kaiser, S. A., Sillett, T. S. & Webster, M. S., 2021, In: Evolution. 75, 4, p. 915-930 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Mapping the degradation pathway of a disease-linked aspartoacylase variant

    Gersing, S. K., Wang, Y., Grønbæk-Thygesen, Martin, Kampmeyer, Caroline, Bjørnkjær, Lene, Willemoës, Martin, Andréasson, C., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2021, In: PLOS Genetics. 17, 4, 28 p., e1009539.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Soil fungal diversity and functionality are driven by plant species used in phytoremediation

    Gil-Martínez, M., López-García, Á., Domínguez, M. T., Kjøller, Rasmus, Navarro-Fernández, C. M., Rosendahl, Søren & Marañón, T., 2021, In: Soil Biology and Biochemistry. 153, 12 p., 108102.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Expansion of the barnacle Austrominius modestus (Darwin, 1854) (Cirripedia, Thoracica, Balanidae) into Scandinavian waters based on collection data and niche distribution modeling

    Glenner, Henrik, Lützen, J., Pacheco-Riaño, L. C. & Noever, C., 2021, In: Aquatic Invasions. 16, 4, p. 675-689 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Frustule Photonics and Light Harvesting Strategies in Diatoms

    Goessling, J. W., Su, Y., Kühl, Michael & Ellegaard, Marianne, 2021, Diatom Morphogenesis. Wiley, p. 269-300 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  48. Published

    Network structure and the optimization of proximity‐based association criteria

    Gomes, A. C. R., Boogert, N. J. & Cardoso, G. C., 2021, In: Methods in Ecology and Evolution. 12, 1, p. 88-100

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Morphological convergence and adaptation in cave and pelagic scale worms (Polynoidae, Annelida)

    Gonzalez, B. C., Martínez, A., Worsaae, Katrine & Osborn, K. J., 2021, In: Scientific Reports. 11, 17 p., 10718.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Sunflower (Helianthus annuus) fatty acid synthase complex: β-Ketoacyl-[acyl carrier protein] reductase genes

    González-Thuillier, I., Venegas-Calerón, M., Moreno-Pérez, A. J., Salas, J. J., Garcés, R., von Wettstein, Penny & Martínez-Force, E., 2021, In: Plant Physiology and Biochemistry. 166, p. 689-699 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    CEP78 functions downstream of CEP350 to control biogenesis of primary cilia by negatively regulating CP110 levels

    Gonçalves, A. B., Hasselbalch, S. K., Joensen, B. B., Patzke, S., Martens, P., Ohlsen, S. K., Quinodoz, M., Nikopoulos, K., Suleiman, R., Jeppesen, M. P. D., Weiss, C., Christensen, Søren Tvorup, Rivolta, C., Andersen, J. S., Farinelli, P. & Pedersen, Lotte Bang, 2021, In: eLife. 10, 34 p., e63731.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    De novo whole-genome assembly and resequencing resources for the roan (Hippotragus equinus), an iconic African antelope

    Gonçalves, M., Siegismund, Hans Redlef, Van Vuuren, B. J., Koepfli, K., Ferrand, N. & Godinho, R., 2021, In: G3: Genes, Genomes, Genetics. 11, 2, 9 p., jkab002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Evolutionary history of the roan antelope across its African range

    Gonçalves, M., Siegismund, Hans Redlef, van Vuuren, B. J., Ferrand, N. & Godinho, R., 2021, In: Journal of Biogeography. 48, 11, p. 2812-2827 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Scaling of oscillatory kinematics and Froude efficiency in baleen whales

    Gough, W. T., Smith, H. J., Savoca, M. S., Czapanskiy, M. F., Fish, F. E., Potvin, J., Bierlich, K. C., Cade, D. E., drf168, drf168, Kennedy, J., Segre, P., Stanworth, A., Weir, C. & Goldbogen, J. A., 2021, In: Journal of Experimental Biology. 224, 13, 13 p., jeb237586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    The Future of DNA Barcoding: Reflections from Early Career Researchers

    Grant, D. M., Brodnicke, O. B., Evankow, A. M., Ferreira, A. O., Fontes, J. T., Hansen, A. K., Jensen, M. R., Kalaycı, T. E., Leeper, A., Patil, S. K., Prati, S., Reunamo, A., Roberts, A. J., Shigdel, R., Tyukosova, V., Bendiksby, M., Blaalid, R., Costa, F. O., Hollingsworth, P. M., Stur, E. & 1 others, Ekrem, T., 2021, In: Diversity. 13, 7, 11 p., 313.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

    Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, Robin, Arakawa, T., Araki, M., Arbel, T., Lange, Jette Bornholdt, Boyd, M., Chen, Y., Coskun, M., Dalby, M., Ienasescu, H., Jørgensen, M., Kaczkowski, B., Kere, J., Li, K., Lilje, B., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Rennie, Sarah, Sandelin, Albin Gustav, Valen, E., Vitezic, M., Vitting-Seerup, K. & FANTOM Consortium, F. C., 2021, In: Nature Communications. 12, 18 p., 3297.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Declare how you are limiting your environmental impact

    Grogan, P., Buckeridge, K. M. & Priemé, Anders, 2021, In: Nature. 596, 7870, p. 35 1 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  58. Published

    Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda

    Guang, X., Lan, T., Wan, Q. H., Huang, Y., Li, H., Zhang, M., Li, R., Zhang, Z., Lei, Y., Zhang, L., Zhang, H., Li, D., Li, X., Li, H., Xu, Y., Qiao, M., Wu, D., Tang, K., Zhao, P., Lin, J-Q. & 11 others, Sahu, S. K., Liang, Q., Jiang, W., Zhang, D., Xu, X., Liu, X., Lisby, Michael, Yang, H., Kristiansen, Karsten, Liu, Huan & Fang, S., 2021, In: Science Bulletin. 66, 19, p. 2002-2013 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Chloranthus genome provides insights into the early diversification of angiosperms

    Guo, X., Fang, D., Sahu, S. K., Yang, S., Guang, X., Folk, R., Smith, S. A., Chanderbali, A. S., Chen, S., Liu, M., Yang, T., Zhang, S., Liu, X., Xu, X., Soltis, P. S., Soltis, D. E. & Liu, Huan, 2021, In: Nature Communications. 12, 14 p., 6930.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures

    Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Macroinvertebrate assemblages in mountain tributaries of glacial-fed and rain-fed rivers in eastern Nepal

    Gurung , S., Singh , R., Wagle, B., Jha , B. R., Khatri , K. & Jacobsen, Dean, 2021, In: Nepal Journal of Environmental Science. 9, 2, p. 45-55

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Do environmental pharmaceuticals affect the composition of bacterial communities in a freshwater stream? A case study of the Knivsta river in the south of Sweden

    Hagberg, A., Gupta, S., Rzhepishevska, O., Fick, J., Burmølle, Mette & Ramstedt, M., 2021, In: Science of the Total Environment. 763, 10 p., 142991.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Perceived global increase in algal blooms is attributable to intensified monitoring and emerging bloom impacts

    Hallegraeff, G. M., Anderson, D. M., Belin, C., Bottein, M. D., Bresnan, E., Chinain, M., Enevoldsen, Henrik Oksfeldt, Iwataki, M., Karlson, B., Mckenzie, C. H., Sunesen, I., Pitcher, G. C., Provoost, P., Richardson, A., Schweibold, L., Tester, P. A., Trainer, V. L., Yñiguez, A. T. & Zingone, A., 2021, In: Communications Earth & Environment. 2, 1, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Adipose MDM2 regulates systemic insulin sensitivity

    Hallenborg, P., Jensen, Benjamin Anderschou Holbech, Fjære, E., Petersen, R. K., Belmaâti, M. S., Rasmussen, S. S., Gunnarsson, J. P., Lauritzen, P., Cheng, K. K. Y., Hermansson, M., Sonne, Si Brask, Ejsing, C. S., Xu, A., Kratchmarova, I., Krüger, M., Madsen, L., Kristiansen, Karsten & Blagoev, B., 2021, In: Scientific Reports. 11, 17 p., 21839.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Synergistic stabilization of a double mutant in chymotrypsin inhibitor 2 from a library screen in E. coli

    Hamborg, L., Granata, D., Olsen, Johan Gotthardt, Roche, J. V., Pedersen, L. E., Nielsen, A. T., Lindorff-Larsen, Kresten & Teilum, Kaare, 2021, In: Communications Biology . 4, 9 p., 980.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Identification of a Catalytic Nucleophile-Activating Network in the endo-α-N-Acetylgalactosaminidase of Family GH101

    Hansen, A. L., Koivisto, J. M., Simonsen, Signe, Dong, Z., Crehuet, R., Hansen, D. K. & Willemoës, Martin, 2021, In: Biochemistry. 60, 45, p. 3398-3407 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    High metabolic substrate load induces mitochondrial dysfunction in rat skeletal muscle microvascular endothelial cells

    Hansen, Camilla Collin, Olsen, K., Pilegaard, Henriette, Bangsbo, Jens, Gliemann, Lasse & Hellsten, Ylva, 2021, In: Physiological Reports. 9, 14, 17 p., e14855.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Conservation of Long-tailed Macaques: Implications of the Updated IUCN Status and the CoVID-19 Pandemic

    Hansen, Malene Friis, Gill, M., Nawangsari, V. A., Sanchez, K. L., Cheyne, S. M., Nijman, V. & Fuentes, A., 2021, In: Primate Conservation. 35, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments

    Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, Paul, M., 2021, In: One Health. 13, 9 p., 100339.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Extension of Plant Phenotypes by the Foliar Microbiome

    Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    SOAPMetaS: profiling large metagenome datasets efficiently on distributed clusters

    He, S., Huang, Z., Wang, X., Fang, L., Li, S., Zhang, Yong & Zhang, G., 2021, In: Bioinformatics. 37, 7, p. 1021-1023 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits

    Heller, Rasmus, Nursyifa, Casia, Garcia Erill, Genís, Salmona, J., Chikhi, L., Meisner, Jonas, Korneliussen, Thorfinn Sand & Albrechtsen, Anders, 2021, In: Molecular Ecology Resources. 21, 4, p. 1085-1097 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Myoanatomy of three aberrant kinorhynch species: similar but different?

    Herranz, Maria, Worsaae, Katrine, Park, T., Di Domenico, M., Leander, B. S. & Sørensen, Martin Vinther, 2021, In: Zoomorphology. 140, 2, p. 193–215

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Revisiting kinorhynch segmentation: variation of segmental patterns in the nervous system of three aberrant species

    Herranz, Maria, Park, T., Di Domenico, M., Leander, B. S., Sørensen, Martin Vinther & Worsaae, Katrine, 2021, In: Frontiers in Zoology. 18, 23 p., 54.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Charge Interactions in a Highly Charge-Depleted Protein

    Hervø-Hansen, S., Højgaard, C., Johansson, Kristoffer Enøe, Wang, Y., Wahni, K., Young, D., Messens, J., Teilum, Kaare, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: Journal of the American Chemical Society. 143, 6, p. 2500-2508 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Characterizing Conformational Changes of ASIC1a During Gating and Peptide Modulation

    Heusser, Stephanie, Sheikh, Zeshan Pervez, Borg, C. B., Galleano, I. & Pless, Stephan, 2021, p. 337A-337A.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  77. Published

    When to wake up? The optimal waking-up strategies for starvation-induced persistence

    Himeoka, Y. & Mitarai, Namiko, 11 Feb 2021, In: PLoS Computational Biology. 17, 2, 21 p., 1008655.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Co-occurrence of contaminants in marine fish from the North East Atlantic Ocean: Implications for human risk assessment

    Ho, Q. T., Bank, M. S., Azad, A. M., Nilsen, B. M., Frantzen, S., Boitsov, S., Maage, A., Kögel, T., Sanden, M., Frøyland, L., Hannisdal, R., Hove, H., Lundebye, A. K., Nøstbakken, O. J. & Madsen, L., 2021, In: Environment International. 157, 13 p., 106858.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Dynamics of Baltic Sea phages driven by environmental changes

    Hoetzinger, M., Nilsson, E., Arabi, R., Osbeck, C. M. G., Pontiller, B., Hutinet, G., Bayfield, O. W., Traving, S., Kisand, V., Lundin, D., Pinhassi, J., Middelboe, Mathias & Holmfeldt, K., 2021, In: Environmental Microbiology. 23, 8, p. 4576-4594 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Plasma IL-8 and ICOSLG as prognostic biomarkers in glioblastoma

    Holst, Camilla Bjørnbak, Christensen, I. J., Vitting-Seerup, K., Skjøth-Rasmussen, J., Hamerlik, P., Poulsen, H. S. & Johansen, Julia Sidenius, 1 Jan 2021, In: Neuro-Oncology Advances. 3, 1

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Queens of the inquiline social parasite Acromyrmex insinuator can join nest-founding queens of its host, the leaf-cutting ant Acromyrmex echinatior

    Howe, Jack, Schiøtt, M. & Boomsma, Jacobus J., 2021, In: Insectes Sociaux. 68, 2-3, p. 255-260 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    A porcine brain-wide RNA editing landscape

    Huang, J., Lin, L., Dong, Z., Yang, L., Zheng, T., Gu, W., Zhang, Y., Yin, T., Sjöstedt, E., Mulder, J., Uhlén, M., Kristiansen, Karsten, Bolund, L. & Luo, Y., 2021, In: Communications Biology . 4, 12 p., 717.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Metabolic Reliance on Photosynthesis Depends on Both Irradiance and Prey Availability in the Mixotrophic Ciliate, Strombidium cf. basimorphum

    Hughes, E. A., Maselli, Maira, Sørensen, Helle & Hansen, Per Juel, 2021, In: Frontiers in Microbiology. 12, 12 p., 642600.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    The effect of early probiotic exposure on the preterm infant gut microbiome development

    Hui, Y., Smith, Birgitte, Mortensen, M. S., Krych, Lukasz, Sørensen, Søren Johannes, Greisen, Gorm, Krogfelt, K. A. & Nielsen, Dennis Sandris, 2021, In: Gut Microbes. 13, 1, 15 p., 1951113.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements

    Humphrey, S., Fillol-Salom, A., Quiles-Puchalt, N., Ibarra Chavez, Rodrigo, Haag, A. F., Chen, J. & Penadés, J. R., 2021, In: Nature Communications. 12, 13 p., 6509.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Phage satellites and their emerging applications in biotechnology

    Ibarra Chavez, Rodrigo, Hansen, Mads Frederik, Pinilla Redondo, Rafael, Seed, K. D. & Trivedi, Urvish, 2021, In: FEMS Microbiology Reviews. 45, 6, 20 p., fuab031.

    Research output: Contribution to journal › Review › Research › peer-review

  87. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, M., Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Hormetic responses in arbuscular mycorrhizal fungi

    Jakobsen, Iver, Murmann, L. M. & Rosendahl, Søren, 2021, In: Soil Biology & Biochemistry. 159, 6 p., 108299.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Lysates of Methylococcus capsulatus Bath induce a lean-like microbiota, intestinal FoxP3+RORγt+IL-17+ Tregs and improve metabolism

    Jensen, B. A. H., Holm, J. B., Larsen, I. S., von Burg, N., Derer, S., Sonne, S. B., Pærregaard, S. I., Damgaard, M. V., Indrelid, S. A., Rivollier, A., Agrinier, A. L., Sulek, K., Arnoldussen, Y. J., Fjære, E., Marette, A., Angell, I. L., Rudi, K., Treebak, J. T., Madsen, L., Åkesson, C. P. & 5 others, Agace, W., Sina, C., Kleiveland, C. R., Kristiansen, Karsten & Lea, T. E., 2021, In: Nature Communications. 12, 19 p., 1093.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Force Field Effects in Simulations of Flexible Peptides with Varying Polyproline II Propensity

    Jephthah, S., Pesce, Francesco, Lindorff-Larsen, Kresten & Skepö, M., 2021, In: Journal of Chemical Theory and Computation. 17, 10, p. 6634-6646 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Ecology of Arctic Lakes and Ponds

    Jeppesen, E., Christoffersen, Kirsten Seestern, Rautio, M. & Lauridsen, T. L., 2021, Arctic Ecology. Thomas, D. N. (ed.). Wiley-Blackwell, p. 159-180 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  92. Published

    Role of the Neutral Amino Acid Transporter SLC7A10 in Adipocyte Lipid Storage, Obesity, and Insulin Resistance

    Jersin, R. Å., Tallapragada, D. S. P., Madsen, A., Skartveit, L., Fjære, E., McCann, A., Dyer, L., Willems, A., Bjune, J-I., Bjune, M. S., Våge, V., Nielsen, H. J., Thorsen, H. L., Nedrebø, B. G., Busch, C., Steen, V. M., Blüher, M., Jacobson, P., Svensson, P-A., Fernø, J. & 9 others, Rydén, M., Arner, P., Nygård, O., Claussnitzer, M., Ellingsen, S., Madsen, L., Sagen, J. V., Mellgren, G. & Dankel, S. N., 2021, In: Diabetes. 70, 3, p. 680-695 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    A transomic cohort as a reference point for promoting a healthy human gut microbiome

    Jie, Z., Liang, S., Ding, Q., Li, F., Tang, S., Wang, D., Lin, Y., Chen, P., Cai, K., Qiu, X., Li, Q., Liao, Y., Zhou, D., Lian, H., Zuo, Y., Chen, X., Rao, W., Ren, Y., Wang, Y., Zi, J. & 17 others, Wang, R., Zhou, H., Lu, H., Wang, X., Zhang, W., Zhang, T., Xiao, L., Zong, Y., Liu, W., Yang, H., Wang, J., Hou, Y., Liu, X., Kristiansen, Karsten, Zhong, H., Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 8, 10 p., 100039.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Dairy consumption and physical fitness tests associated with fecal microbiome in a Chinese cohort

    Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Wang, X., Zhang, T., Zhou, H., Lu, H., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 9 p., 100038.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Disease trends in a young Chinese cohort according to fecal metagenome and plasma metabolites

    Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Zhou, H., Lu, H., Wang, X., Zhang, T., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 10 p., 100037.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    The Baseline Gut Microbiota Directs Dieting-Induced Weight Loss Trajectories

    Jie, Zhuye, Yu, X., Liu, Y., Sun, L., Chen, P., Ding, Q., Gao, Y., Zhang, X., Yu, M., Liu, Y., Zhang, Yong, Kristiansen, Karsten, Jia, H., Brix, S. & Cai, K., 2021, In: Gastroenterology. 160, 6, p. 2029-2042, e1-e16

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Radial Oxygen Loss from Plant Roots - Methods

    Jiménez, J. D. L. C., Pellegrini, Elisa, Pedersen, Ole & Nakazono, M., 2021, In: Plants. 10, 11, 15 p., 2322.

    Research output: Contribution to journal › Review › Research › peer-review

  98. Published

    Root length is proxy for high-throughput screening of waterlogging tolerance in Urochloa spp. grasses

    Jiménez, J. D. L. C., Cardoso, J. A., Kotula, L., Veneklaas, E. J., Pedersen, Ole & Colmer, T. D., 2021, In: Functional Plant Biology. 48, 4, p. 411-421 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    The complexity of wood ash fertilization disentangled: Effects on soil pH, nutrient status, plant growth and cadmium accumulation

    Johansen, Jesper Liengaard, Nielsen, M. L., Vestergård, M., Mortensen, Louise Hindborg, Cruz-Paredes, C., Rønn, Regin, Kjøller, Rasmus, Hovmand, Mads Frederik, Christensen, Søren & Ekelund, Flemming, 2021, In: Environmental and Experimental Botany. 185, 9 p., 104424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Structural and Biophysical Properties of Supercharged and Circularized Nanodiscs

    Johansen, Nicolai Tidemand, Luchini, A., Tidemand, Frederik Grønbæk, Orioli, S., Martel, A., Porcar, L., Arleth, Lise & Pedersen, Martin Cramer, 2021, In: Langmuir. 37, 22, p. 6681-6690 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    The Natural Environment and Its Biodiversity in Greenland During the Present Climate Change

    Johnsen, I. & Heide-Jørgensen, H., 2021, Biogeography in the Sub-Arctic: The Past and Future of North Atlantic Biota. Panagiotakopulu, E. & Sadler, J. P. (eds.). Wiley, p. 339-358 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

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