Department of Biology

 

 
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  1. 2020
  2. Published

    Modelled population growth based on reproduction differs from life tables based on age determination in Danish raccoon dogs (Nyctereutes procyonoides)

    Pagh, S., Buxbom, J., Chriél, M., Pertoldi, C., Pedersen, Jes Søe & Hansen, M. S., 2020, In: Mammal Research. 65, 2, p. 215-222 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Population genetics reveals the selection of honey bee aggression behaviour

    Pan, H., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Drivers of plant traits that allow survival in wetlands

    Pan, Y., Cieraad, E., Clarkson, B. R., Colmer, T. D., Pedersen, Ole, Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 2020, In: Functional Ecology. 34, 5, p. 956-967 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Global patterns of the leaf economics spectrum in wetlands

    Pan, Y., Cieraad, E., Armstrong, J., Armstrong, W., Clarkson, B. R., Colmer, T. D., Pedersen, Ole, Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 2020, In: Nature Communications. 11, 9 p., 4519.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Production of Intrinsically Disordered Proteins for Biophysical Studies: Tips and Tricks

    Pedersen, Christian Parsbæk, Seiffert, P., Brakti, Inna & Bugge, K., 2020, Intrinsically Disordered Proteins: Methods and Protocols. Kragelund, B. B. & Skriver, K. (eds.). Humana Press, p. 195-209 15 p. (Methods in Molecular Biology, Vol. 2141).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    Foraging deeply: Depth‐specific plant nitrogen uptake in response to climate‐induced N‐release and permafrost thaw in the High Arctic

    Pedersen, Emily Pickering, Elberling, Bo & Michelsen, Anders, 2020, In: Global Change Biology. 26, 11, p. 6523-6536 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Replication Protein A (RPA) Mediates Radio-Resistance of Glioblastoma Cancer Stem-Like Cells

    Pedersen, H., Obara, E. A. A., Elbæk, K. J., Vitting-Serup, K. & Hamerlik, P., 2020, In: International Journal of Molecular Sciences. 21, 5, 13 p., 1588.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Aquatic plants are influenced by the surrounding landscape

    Pedersen, Ole, 2020, In: TheScienceBreaker. 6, 3

    Research output: Contribution to journal › Letter › Research

  10. Published

    Jack of all trades - C4 photosynthesis, CAM and HCO3- use in the same tissue: A commentary on: 'Structural basis for C4 photosynthesis without Kranz anatomy in leaves of the submerged freshwater plant Ottelia alismoides'

    Pedersen, Ole, 2020, In: Annals of Botany. 125, 6, p. iv-vi

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Microsensors in plant biology: in vivo visualization of inorganic analytes with high spatial and/or temporal resolution

    Pedersen, Ole, Revsbech, N. P. & Shabala, S., 2020, In: Journal of Experimental Botany. 71, 14, p. 3941-3954

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Evidence of non-structural carbohydrates-mediated response to flooding and salinity in Limonium narbonense and Salicornia fruticosa

    Pellegrini, Elisa, Forlani, G., Boscutti, F. & Casolo, V., 2020, In: Aquatic Botany. 166, 8 p., 103265.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Anti-CRISPR Proteins in Archaea

    Peng, Xu, Mayo-Muñoz, D., Bhoobalan, Yuvaraj & Martinez Alvarez, Laura, 2020, In: Trends in Microbiology. 28, 11, p. 913-921 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Comparative Analysis of Sample Extraction and Library Construction for Shotgun Metagenomics

    Peng, Z., Zhu, X., Wang, Z., Yan, X., Wang, G., Tang, M., Jiang, A. & Kristiansen, Karsten, 2020, In: Bioinformatics and Biology Insights. 14, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Comparative Studies of NGS Assays and Sequencing Technologies

    Peng, Z., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 114 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Latitudinal, sex and inter-specific differences in mercury and other trace metal concentrations in Adélie and Emperor penguins in the Ross Sea, Antarctica

    Pilcher, N., Gaw, S., Eisert, R., Horton, T. W., Gormley, A. M., Cole, T. L. & Lyver, P. O. B., 2020, In: Marine Pollution Bulletin. 154, 9 p., 111047.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Plasmids, CRISPR-Cas and Anti-CRIPSRs: Uncovering the secret lives of mobile genetic elements

    Pinilla Redondo, Rafael, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 217 p.

    Research output: Book/Report › Ph.D. thesis › Research

  18. Published

    Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements

    Pinilla Redondo, Rafael, Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, Søren Johannes, Fineran, P. C. & Bondy-Denomy, J., 2020, In: Nature Communications. 11, 11 p., 5652.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Floral Scent Composition and Fine-Scale Timing in Two Moth-Pollinated Hawaiian Schiedea (Caryophyllaceae)

    Powers, J. M., Seco, Roger, Faiola, C. L., Sakai, A. K., Weller, S. G., Campbell, D. R. & Guenther, A., 2020, In: Frontiers in Plant Science. 11, 16 p., 1116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Identification and validation of 174 COVID-19 vaccine candidate epitopes reveals low performance of common epitope prediction tools

    Prachar, Marek, Justesen, S., Steen-Jensen, D. B., Thorgrimsen, S., Jurgons, E., Winther, Ole & Bagger, F. O., 2020, In: Scientific Reports. 10, 8 p., 20465.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Origin and impact of circular DNA on the eukaryotic genomes

    Prada Luengo, Inigo, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 169 p.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae

    Prada Luengo, Inigo, Møller, H. D., Henriksen, Rasmus Henrik Amund, Gao, Q., Larsen, C. E., Alizadeh, S., Maretty, L., Houseley, J. & Regenberg, Birgitte, 2020, In: Nucleic Acids Research. 48, 14, p. 7883-7898 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Ribosome hibernation and its role in the maintenance of the translation machinery: How hibernation factors of E. coli protect ribosomes in adverse conditions

    Prossliner, T., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 176 p.

    Research output: Book/Report › Ph.D. thesis › Research

  25. Published

    Morphological traits predict host-tree specialization in wood-inhabiting fungal communities

    Purhonen, J., Ovaskainen, O., Halme, P., Komonen, A., Huhtinen, S., Kotiranta, H., Læssøe, Thomas & Abrego, N., 2020, In: Fungal Ecology. 46, 8 p., 100863.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

    Põlme, S., Abarenkov, K., Nilsson, R. H., Lindahl, B. D., Clemmensen, K. E., Kauserud, H., Nguyen, N., Kjøller, R., Bates, S. T., Baldrian, P., Frøslev, T. G., Adojaan, K., Vizzini, A., Suija, A., Pfister, D., Baral, H. O., Järv, H., Madrid, H., Nordén, J., Liu, J-K. & 108 others, Pawlowska, J., Põldmaa, K., Pärtel, K., Runnel, K., Hansen, K., Larsson, K., Hyde, K. D., Sandoval-Denis, M., Smith, M. E., Toome-Heller, M., Wijayawardene, N. N., Menolli, N., Reynolds, N. K., Drenkhan, R., Maharachchikumbura, S. S. N., Gibertoni, T. B., Læssøe, Thomas, Davis, W., Tokarev, Y., Corrales, A., Soares, A. M., Agan, A., Machado, A. R., Argüelles-Moyao, A., Detheridge, A., de Meiras-Ottoni, A., Verbeken, A., Dutta, A. K., Cui, B., Pradeep, C. K., Marín, C., Stanton, D., Gohar, D., Wanasinghe, D. N., Otsing, E., Aslani, F., Griffith, G. W., Lumbsch, T. H., Grossart, H., Masigol, H., Timling, I., Hiiesalu, I., Oja, J., Kupagme, J. Y., Geml, J., Alvarez-Manjarrez, J., Ilves, K., Loit, K., Adamson, K., Nara, K., Küngas, K., Rojas-Jimenez, K., Bitenieks, K., Irinyi, L., Nagy, L. G., Soonvald, L., Zhou, L., Wagner, L., Aime, M. C., Öpik, M., Mujica, M. I., Metsoja, M., Ryberg, M., Vasar, M., Murata, M., Nelsen, M. P., Cleary, M., Samarakoon, M. C., Doilom, M., Bahram, M., Hagh-Doust, N., Dulya, O., Johnston, P., Kohout, P., Chen, Q., Tian, Q., Nandi, R., Amiri, R., Perera, R. H., Chikowski, R. D. S., Mendes-Alvarenga, R. L., Garibay-Orijel, R., Gielen, R., Phookamsak, R., Jayawardena, R. S., Rahimlou, S., Karunarathna, S. C., Tibpromma, S., Brown, S. P., Sepp, S., Mundra, S., Luo, Z., Bose, T., Vahter, T., Netherway, T., Yang, T., May, T., Varga, T., Li, W., Coimbra, V. R. M., de Oliveira, V. R. T., de Lima, V. X., Mikryukov, V. S., Lu, Y., Matsuda, Y., Miyamoto, Y., Kõljalg, U. & Tedersoo, L., 2020, In: Fungal Diversity. 105, 1, p. 1-16 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Functional annotation of human long noncoding RNAs via molecular phenotyping

    Ramilowski, J. A., Yip, C. W., Agrawal, S., Chang, J-C., Ciani, Y., Kulakovskiy, I. V., Mendez, M., Ooi, J. L. C., Ouyang, J. F., Parkinson, N., Petri, A., Roos, L., Severin, J., Yasuzawa, K., Abugessaisa, I., Akalin, A., Antonov, I. V., Arner, E., Bonetti, A., Bono, H. & 96 others, Borsari, B., Brombacher, F., Cameron, C. J. F., Cannistraci, C. V., Cardenas, R., Cardon, M., Chang, H., Dostie, J., Ducoli, L., Favorov, A., Fort, A., Garrido, D., Gil, N., Gimenez, J., Guler, R., Handoko, L., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, K., Hayatsu, N., Heutink, P., Hirose, T., Imada, E. L., Itoh, M., Kaczkowski, B., Kanhere, A., Kawabata, E., Kawaji, H., Kawashima, T., Kelly, S. T., Kojima, M., Kondo, N., Koseki, H., Kouno, T., Kratz, A., Kurowska-Stolarska, M., Kwon, A. T. J., Leek, J., Lennartsson, A., Lizio, M., Lopez-Redondo, F., Luginbühl, J., Maeda, S., Makeev, V. J., Marchionni, L., Medvedeva, Y. A., Minoda, A., Müller, F., Muñoz-Aguirre, M., Murata, M., Nishiyori, H., Nitta, K. R., Noguchi, S., Noro, Y., Nurtdinov, R., Okazaki, Y., Orlando, V., Paquette, D., Parr, C. J. C., Rackham, O. J. L., Rizzu, P., Martinez, D. F. S., Sandelin, Albin Gustav, Sanjana, P., Semple, C. A. M., Shibayama, Y., Sivaraman, D. M., Suzuki, T., Szumowski, S. C., Tagami, M., Taylor, M. S., Terao, C., Thodberg, Malte, Thongjuea, S., Tripathi, V., Ulitsky, I., Verardo, R., Vorontsov, I. E., Yamamoto, C., Young, R. S., Baillie, J. K., Forrest, A. R. R., Guigó, R., Hoffman, M. M., Hon, C. C., Kasukawa, T., Kauppinen, S., Kere, J., Lenhard, B., Schneider, C., Suzuki, H., Yagi, K., de Hoon, M. J. L., Shin, J. W. & Carninci, P., 2020, In: Genome Research. 30, 7, p. 1060-1072 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Arctic soil water chemistry in dry and wet tundra subject to snow addition, summer warming and herbivory simulation

    Rasmussen, Laura Helene, Michelsen, Anders, Ladegaard-Pedersen, P., Nielsen, C. S. & Elberling, Bo, 2020, In: Soil Biology and Biochemistry. 141, 13 p., 107676.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Slope hydrology and permafrost: The effect of snowmelt N transport on downslope ecosystem

    Rasmussen, Laura Helene, Ambus, Per Lennart, Zhang, Wenxin, Jansson, P. E., Michelsen, Anders & Elberling, Bo, 1 May 2020. 2 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  30. Published

    Ecological succession in the vaginal microbiota during pregnancy and birth

    Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Dynamic CO2 and pH levels in coastal, estuarine, and inland waters: theoretical and observed effects on harmful algal blooms

    Raven, J. A., Gobler, C. J. & Hansen, Per Juel, 2020, In: Harmful Algae. 91, 13 p., 101594.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Decomposition of Organic Matter in Caves

    Ravn, N. M. R., Michelsen, Anders & Reboleira, Ana Sofia, 2020, In: Frontiers in Ecology and Evolution. 8, 12 p., 554651.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Arctic soil carbon turnover controlled by experimental snow addition, summer warming and shrub removal

    Ravn, N. R., Elberling, Bo & Michelsen, Anders, 2020, In: Soil Biology and Biochemistry. 142, 12 p., 107698.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Urban birdsongs: higher minimum song frequency of an urban colonist persists in a common garden experiment

    Reichard, D. G., Atwell, J. W., Pandit, M. M., Cardoso, G. C., Price, T. D. & Ketterson, E. D., 2020, In: Animal Behaviour. 170, p. 33-41 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Sprifermin (rhFGF18) versus vehicle induces a biphasic process of extracellular matrix remodeling in human knee OA articular cartilage ex vivo

    Reker, D., Siebuhr, A. S., Thudium, C. S., Gantzel, T., Ladel, C., Michaelis, M., Aspberg, A., Berchtold, Martin Werner, Karsdal, M. A., Gigout, A. & Bay-Jensen, A. C., 2020, In: Scientific Reports. 10, 9 p., 6011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis

    Riber, Leise & Løbner-Olesen, Anders, 2020, In: Molecular Microbiology. 114, 6, p. 906-919

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Insect Herbivory Strongly Modifies Mountain Birch Volatile Emissions

    Rieksta, Jolanta, Li, Tao, Junker, R. R., Jepsen, J. U., Ryde, I. & Rinnan, Riikka, 2020, In: Frontiers in Plant Science. 11, p. 1-12 558979.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Beta-1 and Not Beta-3 Adrenergic Receptors May Be the Primary Regulator of Human Brown Adipocyte Metabolism

    Riis-Vestergaard, M. J., Richelsen, B., Bruun, J. M., Li, W., Hansen, Jacob B. & Pedersen, S. B., 2020, In: The Journal of clinical endocrinology and metabolism. 105, 4, 12 p., dgz298.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Separating direct and indirect effects of rising temperatures on biogenic volatile emissions in the Arctic

    Rinnan, Riikka, Iversen, Lars Lønsmann, Tang, Jing, Vedel-Petersen, I., Schollert, M. & Schurgers, Guy, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 51, p. 32476-32483 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Soil Uptake of Volatile Organic Compounds: Ubiquitous and Underestimated?

    Rinnan, Riikka & Albers, C. N., 2020, In: Journal of Geophysical Research: Biogeosciences. 125, 6, 5 p., e2020JG005773.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  41. Published

    Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells

    Rodriguez, Eleazar, Chevalier, J., Olsen, J., Ansbøl, J., Kapousidou, V., Zuo, Zhangli Thomsen, Svenning, S., Loefke, C., Koemeda, S., Drozdowskyj, P. S., Jez, J., Durnberger, G., Kuenzl, F., Schutzbier, M., Mechtler, K., Ebstrup, E. N., Lolle, S., Dagdas, Y. & Petersen, Morten, 2020, In: EMBO Journal. 39, 4, 11 p., e103315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Pyrazine ring-based Na+/H+ exchanger (NHE) inhibitors potently inhibit cancer cell growth in 3D culture, independent of NHE1

    Rolver, M. G., Elingaard-Larsen, L. O., Andersen, Anne Poder, Counillon, L. & Pedersen, Stine Helene Falsig, 2020, In: Scientific Reports. 10, 17 p., 5800.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Evolutionary Study of the Crassphage Virus at Gene Level

    Rossi, A., Treu, L., Toppo, S., Zschach, Henrike, Campanaro, S. & Dutilh, B. E., 2020, In: Viruses. 12, 9, 13 p., 1035.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The responses of moss-associated nitrogen fixation and belowground microbial community to chronic Mo and P supplements in subarctic dry heaths

    Rousk, Kathrin & Rousk, J., 2020, In: Plant and Soil. 451, 1-2, p. 261-276 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci

    Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    alpha M-Conotoxin MIIIJ Blocks Nicotinic Acetylcholine Receptors at Neuromuscular Junctions of Frog and Fish

    Rybin, M. J., O'Brien, H., Ramiro, Iris Bea L. , Azam, L., McIntosh, J. M., Olivera, B. M., Safavi-Hemami, H. & Yoshikami, D., 2020, In: Toxins. 12, 3, 29 p., 197.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Unravelling interspecies interactions across heterogeneities in complex biofilm communities

    Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  48. Published

    Scratching the surface: native mass spectrometry of peripheral membrane protein complexes

    Sahin, Cagla, Reid, D. J., Marty, M. T. & Landreh, M., 2020, In: Biochemical Society Transactions. 48, 2, p. 547-558

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Draft genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

    Sahu, S. K., Liu, M., Yssel, A., Kariba, R., Muthemba, S., Jiang, S., Song, B., Hendre, P. S., Muchugi, A., Jamnadass, R., Kao, S., Featherston, J., Zerega, N. J. C., Xu, X., Yang, H., Van Deynze, A., Van de Peer, Y., Liu, X. & Liu, Huan, 2020, In: Genes. 11, 1, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Faster nitrogen cycling and more fungal and root biomass in cold ecosystems under experimental warming: a meta-analysis

    Salazar, A., Rousk, Kathrin, Jónsdóttir, I. S., Bellenger, J. & Andrésson, Ó. S., 2020, In: Ecology. 101, 2, 13 p., e02938.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Intrinsic Disorder in Plant Transcription Factor Systems: Functional Implications

    Salladini, Edoardo, Jørgensen, M. L. M., Theisen, Frederik Friis & Skriver, Karen, 2020, In: International Journal of Molecular Sciences (Online). 21, 24, 35 p., 9755.

    Research output: Contribution to journal › Review › Research › peer-review

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