Department of Biology

 

 
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  1. 2021
  2. Published

    Mass-Adaptive Coating-Assisted Single-Cell Proteomics (Mad-CASP) Approach

    Li, S., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 86 p.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    Increasing importance of precipitation in spring phenology with decreasing latitudes in subtropical forest area in China

    Li, X., Fu, Y. H., Chen, S., Xiao, J., Yin, G., Li, X., Zhang, X., Geng, X., Wu, Z., Zhou, X., Tang, Jing & Hao, F., 2021, In: Agricultural and Forest Meteorology. 304-305, 9 p., 108427.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition

    Li, Xuan Ji, Stokholm, Jakob, Brejnrod, A., Vestergaard, G. A., Russel, J., Trivedi, Urvish, Thorsen, Jonathan Jan Ilve, Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: Cell Host & Microbe. 29, 6, p. 975–987.e4 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Antimicrobial Activity of Metals and Metalloids

    Li, Y. P., Fekih, I. B., Fru, E. C., Moraleda-Munoz, A., Li, Xuan Ji, Rosen, B. P., Yoshinaga, M. & Rensing, C., 2021, In: Annual Review of Microbiology. 75, 23 p., 9.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Characterization of the human skin resistome and identification of two microbiota cutotypes

    Li, Z., Xia, J., Jiang, L., Tan, Y., An, Y., Zhu, X., Ruan, J., Chen, Z., Zhen, H., Ma, Y., Jie, Z., Xiao, L., Yang, H., Wang, J., Kristiansen, K., Xu, X., Jin, L., Nie, C., Krutmann, J., Liu, X. & 1 others, Wang, J., 2021, In: Microbiome. 9, 18 p., 47.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Nitric-oxide-driven oxygen release in anoxic Pseudomonas aeruginosa

    Lichtenberg, Mads, Line, L., Schrameyer, V., Jakobsen, Tim Holm, Rybtke, Morten Levin, Toyofuku, M., Nomura, N., Kolpen, Mette, Tolker-Nielsen, Tim, Kühl, Michael, Bjarnsholt, Thomas & Jensen, Peter Østrup, 2021, In: iScience. 24, 12, 103404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Oxygen in the air and oxygen dissolved in the floodwater both sustain growth of aquatic adventitious roots in rice

    Lin, C., Peralta Ogorek, Lucas León, Pedersen, Ole & Sauter, M., 2021, In: Journal of Experimental Botany. 72, 5, p. 1879-1890 eraa542.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A type III-A CRISPR-Cas system mediates co-transcriptional DNA cleavage at the transcriptional bubbles in close proximity to active effectors

    Lin, Jinzhong, Shen, Y., Ni, J. & She, Q., 2021, In: Nucleic Acids Research. 49, 13, p. 7628-7643 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Excretion from the benthic macrofauna covers little of spring nutrient uptake in a small Danish forest stream

    Lindenskov, R. & Jacobsen, Dean, 2021, In: Inland Waters. 11, 3, p. 396-403 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Linking thermodynamics and measurements of protein stability

    Lindorff-Larsen, Kresten & Teilum, Kaare, 2021, In: Protein engineering, design & selection : PEDS. 34, 13 p., gzab002.

    Research output: Contribution to journal › Review › Research › peer-review

  12. Published

    On the Potential of Machine Learning to Examine the Relationship Between Sequence, Structure, Dynamics and Function of Intrinsically Disordered Proteins

    Lindorff-Larsen, Kresten & Kragelund, Birthe Brandt, 2021, In: Journal of Molecular Biology. 433, 20, 22 p., 167196.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    Giraffa camelopardalis

    Liu, C., Gao, J., Huang, J., Wang, W., Heller, Rasmus & Qiu, Q., 2021, In: Trends in Genetics. 37, 9, p. 860-861 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  14. Published

    A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe

    Liu, C., Gao, J., Cui, X., Li, Z., Chen, L., Yuan, Y., Zhang, Y., Mei, L., Zhao, L., Cai, D., Hu, M., Zhou, B., Li, Z., Qin, T., Si, H., Li, G., Lin, Z., Xu, Y., Zhu, C., Yin, Y. & 9 others, Zhang, C., Xu, W., Li, Q., Wang, K., Gilbert, M Thomas P, Heller, Rasmus, Wang, W., Huang, J. & Qiu, Q., 2021, In: Science Advances. 7, 12, 13 p., eabe9459.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

    Liu, J., Wang, Z., Li, J., Xu, L., Liu, J., Feng, S., Guo, C., Chen, S., Ren, Z., Rao, J., Wei, K., Chen, Y., Jarvis, E. D., KU, thw266 & Zhou, Q., 2021, In: Genome Research. 31, 3, p. 497-511 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    The chromosome-level genome of the migratory locust provides novel insights on chromatin changes during phase change of locusts

    Liu, Q., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 169 p.

    Research output: Book/Report › Ph.D. thesis › Research

  17. Published

    Transcription initiation of distant core promoters in a large-sized genome of an insect

    Liu, Q., Jiang, F., Zhang, J., Li, X. & Kang, L., 2021, In: BMC Biology. 19, 21 p., 62.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

    Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases

    Liu, X., Tang, S., Zhong, H., Tong, X., Jie, Z., Ding, Q., Wang, D., Guo, R., Xiao, L., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W., Liu, X., Zhang, Y., Brix, S., Kristiansen, K., Hou, Y., Jia, H. & 1 others, Zhang, T., 2021, In: Cell Discovery. 7, 15 p., 9.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Metagenome-genome-wide association studies reveal human genetic impact on the oral microbiome

    Liu, X., Tong, X., Zhu, J., Tian, L., Jie, Z., Zou, Y., Lin, X., Liang, H., Li, W., Ju, Y., Qin, Y., Zou, L., Lu, H., Zhu, S., Jin, X., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W. & 3 others, Hou, Y., Jia, H. & Zhang, T., 2021, In: Cell Discovery. 7, 16 p., 117.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Three de novo variants in KMT2A (MLL) identified by whole exome sequencing in patients with Wiedemann–Steiner syndrome

    Luo, S., Bi, B., Zhang, W., Zhou, R., Chen, W., Zhao, P., Huang, Y., Yuan, L. & He, X., 2021, In: Molecular Genetics & Genomic Medicine. 9, 10, 11 p., e1798.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    天山中部雪豹栖息地适宜性研究初报

    Ma, B., Pan, Guoliang, Li, L., Chen, Y., Li, Y., Liu, Y., Balike, J., Sun, S. & Shi, K., 2021, In: Acta Theriologica Sinica. 41, 1, p. 1-10 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Structural and functional variation of chitin-binding domains of a lytic polysaccharide monooxygenase from Cellvibrio japonicus

    Madland, E., Forsberg, Z., Wang, Y., Lindorff-Larsen, Kresten, Niebisch, A., Modregger, J., Eijsink, V. G. H., Aachmann, F. L. & Courtade, G., 2021, In: Journal of Biological Chemistry. 297, 4, 17 p., 101084.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    En ny dansk hvepsebi Nomada bifasciata Olivier, 1811 og andre bemærkelsesværdige bier fundet på Ærø (Hymenoptera, Apoidea, Apiformes)

    Madsen, Henning Bang, Poulsen, K. R., Rasmussen, C. & Schmidt, H. T., 2021, In: Entomologiske Meddelelser. 88, 1-2, p. 23-29

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Opdateret distriktskatalog over Danmarks bier (Hymenoptera, Apoidea, Apiformes)

    Madsen, Henning Bang, Schmidt, H. T. & Rasmussen, C., 2021, In: Entomologiske Meddelelser. 88, 1-2, p. 1-22

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Vilde bier, du kan møde i insekthotellet

    Madsen, Henning Bang & Dupont, Y. L., 2021, In: Haven. 4, p. 80-83

    Research output: Contribution to journal › Journal article › Communication

  27. Published

    Motivations of Volunteers in Danish Grazing Organizations

    Madsen, S. F., Ekelund, Flemming, Strange, Niels & Schou, Jesper Sølver, 2021, In: Sustainability. 13, 15, 14 p., 8163.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Antibiotic Tolerance and Persistence Studied Throughout Bacterial Growth Phases

    Maffei, E., Fino, C. & Harms, A., 2021, Bacterial Persistence: Methods and Protocols. Verstraeten, N. & Michiels, J. (eds.). 2. ed. ed. Humana Press, p. 23-40 18 p. (Methods in Molecular Biology, Vol. 2357).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  29. Published

    The P2X7 Receptor Stimulates IL-6 Release from Pancreatic Stellate Cells and Tocilizumab Prevents Activation of STAT3 in Pancreatic Cancer Cells

    Magni, Lara, Bouazzi, R., Heredero Olmedilla, H., Petersen, P. S. S., Tozzi, M. & Novak, Ivana, 2021, In: Cells. 10, 8, 20 p., 1928.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Interorgan communication in the control of metamorphosis

    Malita, Alina & Rewitz, Kim, 2021, In: Current Opinion in Insect Science. 43, p. 54-62 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    Computational and experimental assessment of backbone templates for computational protein design

    Marin, Frederikke Isa, Johansson, K. E., O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, 15 p.

    Research output: Working paper › Preprint

  32. Published

    Computational and Experimental Assessment of Backbone Templates for Computational Redesign of the Thioredoxin Fold

    Marin, Frederikke Isa, Johansson, Kristoffer Enøe, O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: The Journal of Physical Chemistry B. 125, 40, p. 11141-11149

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Interplay of folded domains and the disordered low-complexity domain in mediating hnRNPA1 phase separation

    Martin, E. W., Thomasen, Emil, Milkovic, N. M., Cuneo, M. J., Grace, C. R., Nourse, A., Lindorff-Larsen, Kresten & Mittag, T., 2021, In: Nucleic Acids Research. 49, 5, p. 2931-2945 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Carbon cycling in freshwater ecosystems — from pond to stream network

    Martinsen, K. T., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Conservative route to genome compaction in a miniature annelid

    Martín-Durán, J. M., Vellutini, B. C., Marlétaz, F., Cetrangolo, V., Cvetesic, N., Thiel, D., Henriet, S., Grau-Bové, X., Carrillo-Baltodano, A. M., Gu, W., Kerbl, A., Marquez, Y., Bekkouche, N., Chourrout, D., Gómez-Skarmeta, J. L., Irimia, M., Lenhard, B., Worsaae, Katrine & Hejnol, A., 2021, In: Nature Ecology and Evolution. 5, 2, p. 231-242

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Protodrilidae Hatschek, 1888

    Martínez, A., Purschke, G. & Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 299-337 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    Protodriloididae Purschke & Jouin, 1988

    Martínez, A., Worsaae, Katrine & Purschke, G., 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 338-353 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  38. Published

    Eco-physiology of prey generalist mixoplanktonic ciliates

    Maselli, Maira, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 228 p.

    Research output: Book/Report › Ph.D. thesis › Research

  39. Published

    Retention of Prey Genetic Material by the Kleptoplastidic Ciliate Strombidium cf. basimorphum

    Maselli, Maira, Anestis, K., Klemm, K., Hansen, Per Juel & John, U., 2021, In: Frontiers in Microbiology. 12, 8 p., 694508.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Unveiling mRNP composition by fluorescence correlation and cross-correlation spectroscopy using cell lysates

    Mateu-Regué, À., Christiansen, Jan, Bagger, F. O., Hellriegel, C. & Nielsen, Finn Cilius, 2021, In: Nucleic Acids Research. 49, 20, 15 p., e119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    The AIMe registry for artificial intelligence in biomedical research

    Matschinske, J., Alcaraz, N., Benis, A., Golebiewski, M., Grimm, D. G., Heumos, L., Kacprowski, T., Lazareva, O., List, M., Louadi, Z., Pauling, J. K., Pfeifer, N., Röttger, R., Schwämmle, V., Sturm, G., Traverso, A., Van Steen, K., de Freitas, M. V., Villalba Silva, G. C., Wee, L. & 5 others, Wenke, N. K., Zanin, M., Zolotareva, O., Baumbach, J. & Blumenthal, D. B., 2021, In: Nature Methods. 18, 10, p. 1128-1131 4 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  42. Published

    Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments

    Mazhar, S. H., Li, Xuan Ji, Rashid, A., Su, J., Xu, J., Brejnrod, A. D., Su, J., Wu, Y., Zhu, Y., Zhou, S. G., Feng, R. & Rensing, C., 2021, In: Science of the Total Environment. 755, Part 2, 10 p., 142702.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    20 years of Zootaxa: Tardigrada (Ecdysozoa: Panarthropoda)

    McInnes, S. J., Jørgensen, Aslak & Michalczyk, Ł., 2021, In: Zootaxa. 4979, 1, p. 23-24 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  44. Published

    On the morphology and phylogeny of the diatom species Rhizosolenia setigera: comparison of the type material to modern cultured strains, and a taxonomic revision

    Medlin, L. K., Boonprakob, A., Lundholm, Nina & Moestrup, Øjvind, 2021, In: Nova Hedwigia. 151, p. 223-247

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles

    Meisner, A., Snoek, B. L., Nesme, Joseph, Dent, E., Jacquiod, S., Classen, A. T. & Priemé, Anders, 2021, In: The ISME Journal. 15, 4, p. 1207-1221 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Detecting selection in low-coverage high-throughput sequencing data using principal component analysis

    Meisner, Jonas, Albrechtsen, Anders & Hanghøj, Kristian Ebbesen, 2021, In: BMC Bioinformatics. 22, 13 p., 470.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Large-scale inference of population structure in presence of missingness using PCA

    Meisner, Jonas, Liu, S., Huang, M. & Albrechtsen, Anders, 2021, In: Bioinformatics. 37, 13, p. 1868-1875 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Variation in predicted COVID-19 risk among lemurs and lorises

    Melin, A. D., Orkin, J. D., Janiak, M. C., Valenzuela, A., Kuderna, L., Marrone, F., Ramangason, H., Horvath, J. E., Roos, C., Kitchener, A. C., Khor, C. C., Lim, W. K., Lee, J. G. H., Tan, P., Umapathy, G., Raveendran, M., Alan Harris, R., Gut, I., Gut, M., Lizano, E. & 19 others, Nadler, T., Zinner, D., Le, M. D., Manu, S., Rabarivola, C. J., Zaramody, A., Andriaholinirina, N., Johnson, S. E., Jarvis, E. D., Fedrigo, O., Wu, D., KU, thw266, Farh, K. K., Rogers, J., Marques-Bonet, T., Navarro, A., Juan, D., Arora, P. S. & Higham, J. P., 2021, In: American Journal of Primatology. 83, 6, 12 p., e23255.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    RNA sequencing and proteomic profiling reveal different alterations by dietary methylmercury in the hippocampal transcriptome and proteome in BALB/c mice

    Mellingen, R. M., Myrmel, L. S., Lie, K. K., Rasinger, J. D., Madsen, L. & Nøstbakken, O. J., 2021, In: Metallomics : integrated biometal science. 13, 5, 12 p., mfab022.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Evolution of A bHLH Interaction Motif

    Millard, P. S., Kragelund, Birthe Brandt & Burow, Meike, 2021, In: International Journal of Molecular Sciences. 22, 1, 18 p., 447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A guide for field studies and environmental monitoring of mixoplankton populations

    Mitra, A. (ed.), Gypens, N. (ed.), Hansen, Per Juel (ed.) & Flynn, K. J. (ed.), 2021, Zenodo.

    Research output: Book/Report › Report › Research

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