Department of Biology

 

 
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  1. 2021
  2. Published

    Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

    Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.

    Singh, N. K., Lavire, C., Nesme, Joseph, Vial, L., Nesme, X., Mason, C. E., Lassalle, F. & Venkateswaran, K., 2021, In: Frontiers in Microbiology. 12, 15 p., 765943.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The RelA hydrolase domain acts as a molecular switch for (p)ppGpp synthesis

    Sinha, A. K. & Winther, K. S., 2021, In: Communications Biology . 4, 10 p., 434.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Female-biased sex allocation and lack of inbreeding avoidance in Cubitermes termites

    Sinotte, Veronica Marie, Conlon, B. H., Seibel, E., Schwitalla, J. W., de Beer, Z. W., Poulsen, Michael & Bos, N., 2021, In: Ecology and Evolution. 11, 10, p. 5598-5605 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Dynamic Na+/H+ exchanger 1 (NHE1) - calmodulin complexes of varying stoichiometry and structure regulate Ca2+-dependent NHE1 activation

    Sjøgaard-Frich, Lise Margrethe, Prestel, Andreas, Pedersen, E. S., Severin, M., Kristensen, Kristian Kølby, Olsen, Johan Gotthardt, Kragelund, Birthe Brandt & Pedersen, Stine Helene Falsig, 2021, In: eLife. 10, 29 p., e60889.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The Development of Bacteriophage Resistance in Vibrio alginolyticus Depends on a Complex Metabolic Adaptation Strategy

    Skliros, D., Kalatzis, Panagiotis, Kalloniati, C., Komaitis, F., Papathanasiou, S., Kouri, E. D., Udvardi, M. K., Kokkari, C., Katharios, P. & Flemetakis, E., 2021, In: Viruses. 13, 4, 26 p., 656.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Status and perspectives of biomarker validation for diagnosis, stratification, and treatment

    Skov, J., Kristiansen, Karsten, Jespersen, J. & Olesen, P., 2021, In: Public Health. 190, p. 173-175 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  9. Published

    Explicitly modelling microtopography in permafrost landscapes in a land-surface model (JULES vn5.4_microtopography)

    Smith, N. D., Chadburn, S. E., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. & Westermann, S., 2021, 43 p.

    Research output: Working paper › Preprint › Research

  10. Published

    High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects

    Song, Y., Kamstra, J. H., Cao, Y., Asselman, J., Anglès d'Auriac, M. & Friberg, N., 2021, In: Journal of Hazardous Materials. 408, 124490.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Subacute phase of subarachnoid haemorrhage in female rats: Increased intracranial pressure, vascular changes and impaired sensorimotor function

    Spray, S., Haanes, Kristian Agmund, Edvinsson, L. & Johansson, S. E., 2021, In: Microvascular Research. 135, 12 p., 104127.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Connecting the αα-hubs: same fold, disordered ligands, new functions

    Staby, L., Bugge, K., Falbe-Hansen, R. G., Salladini, Edoardo, Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Cell Communication and Signaling. 19, 5 p., 2.

    Research output: Contribution to journal › Letter › Research › peer-review

  13. Published

    Disorder in a two-domain neuronal Ca2+-binding protein regulates domain stability and dynamics using ligand mimicry

    Staby, L., Kemplen, K. R., Stein, Amelie, Ploug, Michael, Clarke, J., Skriver, Karen, Heidarsson, P. O. & Kragelund, Birthe Brandt, 2021, In: Cellular and molecular life sciences : CMLS. 78, p. 2263-2278 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Flanking Disorder of the Folded αα-Hub Domain from Radical Induced Cell Death1 Affects Transcription Factor Binding by Ensemble Redistribution: Flanking disorder tunes the RCD1-RST ensemble

    Staby, L., Due, Amanda Duncan, Kunze, M. B. A., Jørgensen, M. L. M., Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Journal of Molecular Biology. 433, 24, 15 p., 167320.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis

    Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, Joseph, Madsen, Jonas Stenløkke, Kovac, J., Sørensen, Søren Johannes, Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Three Ribosomal Operons of Escherichia coli Contain Genes Encoding Small RNAs That Interact With Hfq and CsrA in vitro

    Stenum, T. S., Kongstad, M., Holmqvist, E., Kallipolitis, B., Svenningsen, Sine Lo & Sørensen, Michael Askvad, 2021, In: Frontiers in Microbiology. 12, 18 p., 625585.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Selection criteria for early breast cancer patients in the DBCG proton trial - The randomised phase III trial strategy

    Stick, L. B., Lorenzen, E. L., Yates, E. S., Anandadas, C., Andersen, K., Aristei, C., Byrne, O., Hol, S., Jensen, I., Kirby, A. M., Kirova, Y. M., Marrazzo, L., Matias-Perez, A., Nielsen, M. M. B., Nissen, H. D., Oliveros, S., Verhoeven, K., Vikstrom, J. & Offersen, B. V., Mar 2021, In: Clinical and Translational Radiation Oncology. 27, p. 126-131 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Using UCEs to track the influence of sea‐level change on leafy seadragon populations

    Stiller, Josefin, Rodrigues da Fonseca, Rute Andreia, Alfaro, M. E., Faircloth, B. C., Wilson, N. G. & Rouse, G. W., 2021, In: Molecular Ecology. p. 1364-1380

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Emergence and radiation of distemper viruses in terrestrial and marine mammals

    Stokholm, Iben, Puryear, W., Sawatzki, K., Knudsen, Steen Wilhelm, Terkelsen, Thilde Bagger, Becher, P., Siebert, U. & Olsen, Morten Tange, 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1961, 9 p., 20211969.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genomic Stability and Phenotypic Characteristics of Industrially Produced Lacticaseibacillus rhamnosus GG in a Yogurt Matrix

    Strickertsson, Marianne Stage, Hui, Y., Nielsen, Dennis Sandris, Vera-Jimenéz, N. I., Olsen, J., Sandelin, Albin Gustav & Wichmann, A., 2021, In: Applied and Environmental Microbiology. 87, 24, 18 p., e01575-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    DNA Double-Strand Break-Induced Gene Amplification in Yeast

    Strucko, T., Lisby, Michael & Mortensen, U. H., 2021, Homologous Recombination: Methods and Protocols. Aguilera, A. & Carreira, A. (eds.). Humana Press, p. 239-252 14 p. (Methods in Molecular Biology, Vol. 2153).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  22. Published

    Bioactive Ascochlorin Analogues from the Marine-Derived Fungus Stilbella fimetaria

    Subko, K., Kildgaard, S., Vicente, F., Reyes, F., Genilloud, O. & Larsen, T. O., 2021, In: Marine Drugs. 19, 2, 12 p., 46.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Deconstructing transcriptional variations and their effects on immunomodulatory function among human mesenchymal stromal cells

    Sun, C., Zhang, K., Yue, J., Meng, S. & Zhang, X., 2021, In: Stem Cell Research & Therapy. 12, 16 p., 53.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Time-course single-cell RNA sequencing reveals transcriptional dynamics and heterogeneity of limbal stem cells derived from human pluripotent stem cells

    Sun, C., Wang, H., Ma, Q., Chen, C., Yue, J., Li, B. & Zhang, X., 2021, In: Cell and Bioscience. 11, 12 p., 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Characterization of genomic clones by targeted deep sequencing of ctDNA to monitor liver cancer

    Sun, Y., Kong, X., Yu, J., Zheng, X., Lin, M., Cheng, Z., Wang, H., An, N., Xie, Y., Zeng, S., Xue, S., Xia, M., Wei, X., Song, L., Liu, F., Fan, C., Fang, Z., Gao, L., Yang, Y., Zhu, S. & 1 others, Shi, T., 2021, In: Translational Cancer Research. 10, 10, p. 4387-4402 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The Latin America and Caribbean HAB status report based on OBIS and HAEDAT maps and databases

    Sunesen, I., Méndez, S. M., Mancera-Pineda, J. E., Dechraoui Bottein, M. Y. & Enevoldsen, Henrik Oksfeldt, 2021, In: Harmful Algae. 102, 101920.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Efficient Production of Pyruvate Using Metabolically Engineered Lactococcus lactis

    Suo, F., Liu, J., Chen, J., Li, Xuan Ji, Solem, C. & Jensen, P. R., 2021, In: Frontiers in Bioengineering and Biotechnology. 8, 12 p., 611701.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Lipolysis drives expression of the constitutively active receptor GPR3 to induce adipose thermogenesis

    Sveidahl Johansen, O., Ma, T., Hansen, J. B., Markussen, L. K., Schreiber, R., Reverte-Salisa, L., Dong, H., Christensen, D. P., Sun, W., Gnad, T., Karavaeva, I., Nielsen, T. S., Kooijman, S., Cero, C., Dmytriyeva, O., Shen, Y., Razzoli, M., O'Brien, S. L., Kuipers, E. N., Nielsen, C. H. & 31 others, Orchard, W., Willemsen, N., Jespersen, N. Z., Lundh, M., Sustarsic, E. G., Hallgren, C. M., Frost, M., McGonigle, S., Isidor, Marie Sophie, Broholm, C., Pedersen, Oluf Borbye, Hansen, Jacob B., Grarup, Niels, Hansen, Torben, Kjær, Andreas, Granneman, J. G., Babu, M. M., Calebiro, D., Nielsen, S., Rydén, M., Soccio, R., Rensen, P. C. N., Treebak, Jonas Thue, Schwartz, Thue W., Emanuelli, Brice, Bartolomucci, A., Pfeifer, A., Zechner, R., Schéele, Camilla Charlotte Nielsen, Mandrup, S. & Gerhart-Hines, Z., 2021, In: Cell. 184, 13, p. 3502-3518 + 50 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Contrasting responses of major and minor volatile compounds to warming and gall-infestation in the Arctic willow Salix myrsinites

    Swanson, L., Li, Tao & Rinnan, Riikka, 2021, In: Science of the Total Environment. 793, 10 p., 148516.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

    Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Optimal physical design in a new lake for reducing phosphorus pools

    Sø, Jonas Stage, Sand-Jensen, Kaj & Kragh, T., 1 Mar 2021, In: Ecological Engineering. 161, 11 p., 106160.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    The lichen genus Villophora (Teloschistaceae, Ascomycota)

    Søchting, Ulrik, Søgaard, M. Z., Sancho, L. G. & Arup, U., 2021, In: Lichenologist. 53, 3, p. 245-255 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    An under‑ice bloom of mixotrophic haptophytes in low nutrient and freshwater‑influenced Arctic waters

    Søgaard, D. H., Sorrell, B. K., Sejr, M. K., Andersen, P., Rysgaard, S., Hansen, Per Juel, Skyttä, A., Lemcke, S. & Lund-Hansen, L. C., 2021, In: Scientific Reports. 11, 8 p., 11:2915.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture

    Tabacchioni, S., Passato, S., Ambrosino, P., Huang, L., Caldara, M., Cantale, C., Hett, J., Del Fiore, A., Fiore, A., Schlüter, A., Sczyrba, A., Maestri, E., Marmiroli, N., Neuhoff, D., Nesme, J., Sørensen, S. J., Aprea, G., Nobili, C., Presenti, O., Giovannetti, G. & 4 others, Giovannetti, C., Pihlanto, A., Brunori, A. & Bevivino, A., 2021, In: Microorganisms. 9, 2, 23 p., 426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Ectoparasitic fungi of Myrmica ants alter the success of parasitic butterflies

    Tartally, A., Szabó, N., Somogyi, A. Á., Báthori, F., Haelewaters, D., Mucsi, A., Fürjes-Mikó, Á. & Nash, David Richard, 2021, In: Scientific Reports. 11, 13 p., 24031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Multiphysics modelling of photon, mass and heat transfer in coral microenvironments

    Taylor Parkins, S. K., Murthy, Swathi, Picioreanu, C. & Kühl, Michael, 2021, In: Journal of the Royal Society. Interface. 18, 182, 15 p., 20210532.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    On the specificity of protein-protein interactions in the context of disorder

    Teilum, Kaare, Olsen, Johan Gotthardt & Kragelund, Birthe Brandt, 2021, In: Biochemical Journal. 478, 11, p. 2035-2050 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  38. Published

    High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers

    Terkelsen, T., Pernemalm, M., Gromov, P., Borresen-Dale, A., Krogh, Anders, Haakensen, V. D., Lethio, J., Papaleo, E. & Gromova, I., 2021, In: Molecular Oncology. 15, 2, p. 429-461 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Accurate model of liquid-liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties

    Tesei, Giulio, Schulze, T. K., Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 44, 10 p., e2111696118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles

    Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Wang, Y., Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: PLOS Computational Biology. 17, 1, 18 p., e1008551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Quantification of Conformational Entropy Unravels Effect of Disordered Flanking Region in Coupled Folding and Binding

    Theisen, Frederik Friis, Staby, L., Tidemand, Frederik Grønbæk, O'Shea, Charlotte, Prestel, Andreas, Willemoës, Martin, Kragelund, Birthe Brandt & Skriver, Karen, 2021, In: Journal of the American Chemical Society. 143, 36, p. 14540-14550 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans

    Thingholm, L. B., Bang, C., Rühlemann, M. C., Starke, A., Sicks, F., Kaspari, V., Jandowsky, A., Froelich, K., Ismer, G., Bernhard, A., Bombis, C., Struve, B., Rausch, P. & Franke, A., 2021, In: BMC Microbiology. 21, 20 p., 276.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Follow the leader? Orange-fronted conures eavesdrop on conspecific vocal performance and utilise it in social decisions

    Thomsen, Heidi Maria, Balsby, T. J. S. & Dabelsteen, Torben, 2021, In: PLoS ONE. 16, 6, 22 p., e0252374.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Imprimer La Lumiere – 3D Printing Bioluminescence for Architectural Materiality

    Thomsen, M. R., Tamke, M., Mosse, A., Sieder-semlitsch, J., Bradshaw, H., Buchwald, E. F. & Moßhammer, Maria, 2021, Proceedings of the 2021 DigitalFUTURES: The 3rd International Conference on Computational Design and Robotic Fabrication (CDRF 2021). Yuan, P. F., Chai, H., Yan, C. & Leach, N. (eds.). Springer Singapore, p. 305-315 11 p. Chapter 28

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  45. Published

    Leaf breakdown rates as a functional indicator were influenced by an invasive non-native invertebrate in urban ponds

    Thornhill, I., Friberg, N., Batty, L., Thamia, V. & Ledger, M. E., May 2021, In: Ecological Indicators. 124, 10 p., 107360.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial

    Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Rasmussen, Morten Arendt, Mortensen, M. S., Brejnrod, A. D., Hjelmsø, M., Shah, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes & Bisgaard, H., 2021, In: American Journal of Respiratory and Critical Care Medicine. 204, 2, p. 149-158

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Response of an Afro-Palearctic bird migrant to glaciation cycles

    Thorup, Kasper, Pedersen, L., Rodrigues da Fonseca, Rute Andreia, Naimi, B., Nogues, David Bravo, Krapp, M., Manica, A., Willemoes, M., Sjöberg, Sissel, Feng, S., Chen, G., Rey de la Iglesia, Alba, Campos, P. F., Beyer, R., Araújo, M. B., Hansen, Anders Johannes, KU, thw266, Tøttrup, Anders P. & Rahbek, Carsten, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 8 p., e2023836118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  49. Published

    The effect of smartphone-based monitoring and treatment on the rate and duration of psychiatric readmission in patients with unipolar depressive disorder: The RADMIS randomized controlled trial

    Tønning, M. L., Faurholt-Jepsen, Maria , Frost, M., Martiny, Klaus, Tuxen, N., Rosenberg, N., Busk, J., Winther, Ole, Melbye, S. A., Thaysen-Petersen, D., Aamund, K. A., Tolderlundh, L., Bardram, J. E. & Kessing, Lars Vedel, 2021, In: Journal of Affective Disorders. 282, p. 354-363 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Comparative Genomic and Metabolic Analysis of Streptomyces sp. RB110 Morphotypes Illuminates Genomic Rearrangements and Formation of a New 46-Membered Antimicrobial Macrolide

    Um, S., Guo, H., Thiengmag, S., Benndorf, R., Murphy, Rob, Rischer, M., Braga, D., Poulsen, Michael, de Beer, Z. W., Lackner, G. & Beemelmanns, C., 2021, In: ACS chemical biology. 16, 8, p. 1482-1492

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Food Webs and Fish Size Patterns in Insular Lakes Partially Support Climate-Related Features in Continental Lakes

    Vidal, N., Amsinck, S. L., Gonçalves, V., Neto Azevedo, J. M., Johansson, L. S., Christoffersen, Kirsten Seestern, Lauridsen, T. L., Søndergaard, M., Bjerring, R., Landkildehus, F., Brodersen, K. P., Meerhoff, M. & Jeppesen, E., 2021, In: Water (Switzerland). 13, 10, 20 p., 1380.

    Research output: Contribution to journal › Journal article › Research › peer-review

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