Department of Biology

 

 
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  1. 2021
  2. Published

    Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

    Krupovic, M., Turner, D., Morozova, V., Dyall-Smith, M., Oksanen, H. M., Edwards, R., Dutilh, B. E., Lehman, S. M., Reyes, A., Baquero, D. P., Sullivan, M. B., Uchiyama, J., Nakavuma, J., Barylski, J., Young, M. J., Du, S., Alfenas-Zerbini, P., Kushkina, A., Kropinski, A. M., Kurtböke, I. & 29 others, Brister, J. R., Lood, C., Sarkar, B. L., Yigang, T., Liu, Y., Huang, L., Wittmann, J., Chanishvili, N., van Zyl, L. J., Rumnieks, J., Mochizuki, T., Jalasvuori, M., Aziz, R. K., Łobocka, M., Stedman, K. M., Shkoporov, A. N., Gillis, A., Peng, Xu, Enault, F., Knezevic, P., Lavigne, R., Rhee, S. K., Cvirkaite-Krupovic, V., Moraru, C., Moreno Switt, A. I., Poranen, M. M., Millard, A., Prangishvili, D. & Adriaenssens, E. M., 2021, In: Archives of Virology. 166, 11, p. 3239-3244 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Bacteriophage Resistance Affects Flavobacterium columnare Virulence Partly via Mutations in Genes Related to Gliding Motility and the Type IX Secretion System

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Sundell, K., Wiklund, T., Middelboe, Mathias, Landor, L., Ashrafi, R., Hoikkala, V. & Sundberg, L., 2021, In: Applied and Environmental Microbiology. 87, 16, 19 p., e00812-21 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comparison of Delivery Methods in Phage Therapy against Flavobacterium columnare Infections in Rainbow Trout

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Middelboe, Mathias, Clark, J. & Sundberg, L. R., 2021, In: Antibiotics. 10, 8, 19 p., 914.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track

    Kuo, T., Bath, T., Ma, S., Pattengale, N., YANG, Meng, Cao, Y., Hudson, C. M., Kim, J., Post, K., Xiong, L. & Ohno-Machado, L., 2021, In: International Journal of Medical Informatics. 154, 8 p., 104559.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Forested Riparian Zones Provide Important Habitat for Fish in Urban Streams

    Kupilas, B., Burdon, F. J., Thaulow, J., Håll, J., Mutinova, P. T., Forio, M. A. E., Witing, F., Rîșnoveanu, G., Goethals, P., McKie, Brendan Gerard & Friberg, N., 2021, In: Water. 13, 6, 19 p., 877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Large-scale association analyses identify host factors influencing human gut microbiome composition

    Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J. Y., Kim, H. N., Lüll, K., Barkan, E. & 84 others, Shah, S. A., Fornage, M., Szopinska-Tokov, J., Wallen, Z. D., Borisevich, D., Agreus, L., Andreasson, A., Bang, C., Bedrani, L., Bell, J. T., Bisgaard, H., Boehnke, M., Boomsma, D. I., Burk, R. D., Claringbould, A., Croitoru, K., Davies, G. E., van Duijn, C. M., Duijts, L., Falony, G., Fu, J., van der Graaf, A., Hansen, Torben, Homuth, G., Hughes, D. A., Ijzerman, R. G., Jackson, M. A., Jaddoe, V. W. V., Joossens, M., Jørgensen, T., Keszthelyi, D., Knight, R., Laakso, M., Laudes, M., Launer, L. J., Lieb, W., Lusis, A. J., Masclee, A. A. M., Moll, H. A., Mujagic, Z., Qibin, Q., Rothschild, D., Shin, H., Sørensen, Søren Johannes, Steves, C. J., Thorsen, Jonathan Jan Ilve, Timpson, N. J., Tito, R. Y., Vieira-Silva, S., Völker, U., Völzke, H., Võsa, U., Wade, K. H., Walter, S., Watanabe, K., Weiss, S., Weiss, F. U., Weissbrod, O., Westra, H. J., Willemsen, G., Payami, H., Jonkers, D. M. A. E., Arias Vasquez, A., de Geus, E. J. C., Meyer, K. A., Stokholm, Jakob, Segal, E., Org, E., Wijmenga, C., Kim, H. L., Kaplan, R. C., Spector, T. D., Uitterlinden, A. G., Rivadeneira, F., Franke, A., Lerch, M. M., Franke, L., Sanna, S., D’Amato, M., Pedersen, Oluf Borbye, Paterson, A. D., Kraaij, R., Raes, J. & Zhernakova, A., 2021, In: Nature Genetics. 53, p. 156-165 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Molecular Detection and Characterization of Intestinal and Blood Parasites in Wild Chimpanzees (Pan troglodytes verus) in Senegal

    Köster, P. C., Renelies‐hamilton, J., Dotras, L., Llana, M., Vinagre‐izquierdo, C., Prakas, P., Sneideris, D., Dashti, A., Bailo, B., Lanza, M., Jiménez‐Mejías, A., Muñoz‐García, C., Muadica, A. S., González‐Barrio, D., Rubio, J. M., Fuentes, I., Ponce‐Gordo, F., Calero‐Bernal, R. & Carmena, D., 2021, In: Animals. 11, 11, 23 p., 3291.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Fitting Side-Chain NMR Relaxation Data Using Molecular Simulations

    Kümmerer, Felix, Orioli, S., Harding-Larsen, D., Hoffmann, F., Gavrilov, Y., Teilum, Kaare & Lindorff-Larsen, Kresten, 2021, In: Journal of Chemical Theory and Computation. 17, 8, p. 5262-5275 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Effects of dispersal strategy and migration history on genetic diversity and population structure of Antarctic lichens

    Lagostina, E., Andreev, M., Dal Grande, F., Grewe, F., Lorenz, A., Lumbsch, H. T., Rozzi, R., Ruprecht, U., Sancho, L. G., Søchting, Ulrik, Scur, M., Wirtz, N. & Printzen, C., 2021, In: Journal of Biogeography. 48, 7, p. 1635-1653 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Labour classified by cervical dilatation & fetal membrane rupture demonstrates differential impact on RNA-seq data for human myometrium tissues

    Lai, P. F., Lei, K., Zhan, X., Sooranna, G., Li, J. K. H., Georgiou, E. X., Das, A., Singh, N., Li, Q., Stanfield, Z., KU, thw266, Tribe, R. M., Mesiano, S. & Johnson, M. R., 2021, In: PLoS ONE. 16, 11, 22 p., e0260119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    The LEAFY floral regulator displays pioneer transcription factor properties

    Lai, X., Blanc-Mathieu, R., GrandVuillemin, L., Huang, Y., Stigliani, Arnaud, Lucas, J., Thévenon, E., Loue-Manifel, J., Turchi, L., Daher, H., Brun-Hernandez, E., Vachon, G., Latrasse, D., Benhamed, M., Dumas, R., Zubieta, C. & Parcy, F., 2021, In: Molecular Plant. 14, 5, p. 829-837 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Ubiquitin Interacting Motifs: Duality Between Structured and Disordered Motifs

    Lambrughi, M., Maiani, E., Fas, B. A., Shaw, G. S., Kragelund, Birthe Brandt, Lindorff-Larsen, Kresten, Teilum, Kaare, Invernizzi, G. & Papaleo, E., 2021, In: Frontiers in Molecular Biosciences. 8, 14 p., 676235.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Habitat type and community age as barriers to alien plant invasions in coastal species-habitat networks

    Lami, F., Vitti, S., Marini, L., Pellegrini, Elisa, Casolo, V., Trotta, G., Sigura, M. & Boscutti, F., 2021, In: Ecological Indicators. 133, 10 p., 108450.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    August Krogh's contribution to the rise of physiology during the first half the 20th century

    Larsen, Erik Hviid, Hoffmann, E., Hedrick, M. S. & Wang, T., 2021, In: Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology. 256, 7 p., 110931.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Dual skin functions in amphibian osmoregulation

    Larsen, Erik Hviid, 2021, In: Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology. 253, p. 1-8 8 p., 110869.

    Research output: Contribution to journal › Review › Research › peer-review

  17. Published

    CDX2 regulates interleukin-33 gene expression in intestinal epithelial cells (LS174T)

    Larsen, S., Seidelin, Jakob Benedict, Davidsen, J., Dahlgaard, K., Nielsen, Claus Henrik, Bennett, Eric Paul, Pedersen, O. B., Coskun, M. & Troelsen, J. T., 2021, In: FEBS Open Bio. 11, 6, p. 1638-1644

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Vocalisations in farm animals: A step towards positive welfare assessment

    Laurijs, K. A., Briefer, Elodie, Reimert, I. & Webb, L. E., 2021, In: Applied Animal Behaviour Science. 236, 13 p., 105264.

    Research output: Contribution to journal › Review › Research › peer-review

  19. Published

    Urbanized microbiota in infants, immune constitution and later risk of atopic diseases

    Lehtimäki, J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2021, In: Journal of Allergy and Clinical Immunology. 148, 1, p. 234-243 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Opportunities and challenges of macrogenetic studies

    Leigh, D. M., van Rees, C. B., Millette, K. L., Breed, M. F., Schmidt, C., Bertola, Laura, Hand, B. K., Hunter, M. E., Jensen, E. L., Kershaw, F., Liggins, L., Luikart, G., Manel, S., Mergeay, J., Miller, J. M., Segelbacher, G., Hoban, S. & Paz-Vinas, I., 2021, In: Nature Reviews Genetics. 22, 12, p. 791-807 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  21. Published

    The evolutionary significance of incomplete lineage sorting (ILS) in animals

    Li, F., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 281 p.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    Symbiont-Mediated Digestion of Plant Biomass in Fungus-Farming Insects

    Li, H., Young, S. E., Poulsen, Michael & Currie, C. R., 2021, In: Annual Review of Entomology. 66, p. 297-316 20 p.

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals

    Li, J., Zhang, J., Liu, J., Zhou, Y., Cai, C., Xu, L., Dai, X., Feng, S., Guo, C., Rao, J., Wei, K., Jarvis, E. D., Jiang, Y., Zhou, Z., KU, thw266 & Zhou, Q., 2021, In: GigaScience. 10, 1, 15 p., giaa142.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

    Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Interactions between the Prophage 919TP and Its Vibrio cholerae Host: Implications of gmd Mutation for Phage Resistance, Cell Auto-Aggregation, and Motility

    Li, N., Zeng, Y., Hu, B., Zhu, T., Svenningsen, Sine Lo, Middelboe, Mathias & Tan, D., 2021, In: Viruses. 13, 12, 15 p., 2342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Network of Interactions Between Gut Microbiome, Host Biomarkers, and Urine Metabolome in Carotid Atherosclerosis

    Li, R-J., Jie, Z-Y., Feng, Q., Fang, R-L., Li, F., Gao, Y., Xia, H-H., Zhong, H-Z., Tong, B., Madsen, L., Zhang, J-H., Liu, C-L., Xu, Z-G., Wang, J., Yang, H-M., Xu, X., Hou, Y., Brix, S., Kristiansen, K., Yu, X-L. & 2 others, Jia, H. & He, K., 2021, In: Frontiers in Cellular and Infection Microbiology. 11, 12 p., 708088.

    Research output: Contribution to journal › Journal article › Research › peer-review

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