Department of Biology

 

 
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  1. Published

    Heritability of sperm length in the bumblebee Bombus terrestris

    Baer, B., de Jong, G., Schmid-Hempel, R., Schmid-Hempel, P., Høeg, Jens Thorvald & Boomsma, Jacobus J., 2006, In: Genetica. 127, 1-3, p. 11-23 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Sperm storage induces an immunity cost in ants

    Baer, B., Armitage, S. A. O. & Boomsma, Jacobus J., 2006, In: Nature. 441, 7095, p. 872-5 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Male reproductive investment and queen mating-frequency in fungus-growing ants

    Baer, B. & Boomsma, Jacobus J., 2004, In: Behavioral Ecology. Vol. 15, no. 3, p. 426-432

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Sperm Storage Costs Determine Survival and Immunocompetence in Newly Mated Queens of the Leaf-Cutting Ant Atta colombica

    Baer-Imhoof, B., Beckers, Susanne den Boer, Boomsma, Jacobus J. & Baer, B., 2022, In: Frontiers in Ecology and Evolution. 9, 10 p., 759183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law

    Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, Søren Johannes, Riber, Leise, Fickers, P. & Delvigne, F., 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    O-glycan initiation directs distinct biological pathways and controls epithelial differentiation

    Bagdonaite, Ieva , Pallesen, E. M. H., Ye, Z., Vakhrushev, Sergey, Marinova, I. N., Nielsen, Mathias Alexander Ingemann, Kramer, S. H., Pedersen, Stine Helene Falsig, Joshi, Hiren Jitendra, Bennett, Eric Paul, Dabelsteen, Sally & Wandall, Hans H., 2020, In: EMBO Reports. 21, 6, 17 p., e48885.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Choice of medium affects PBMC quantification, cell size, and downstream respiratory analysis

    Bager Christensen, I., Ribas, L., Moßhammer, Maria, Abrahamsen, Marie-Louise Brødsgaard, Kühl, Michael, Larsen, Steen, Dela, Flemming & Gillberg, Linn, 2024, In: Mitochondrion. 77, 7 p., 101890.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Examination of the Regulation and Function of TopBP1 during Mitotic DNA Repair

    Bagge, J., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 124 p.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Functions of TopBP1 in preserving genome integrity during mitosis

    Bagge, J., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2021, In: Seminars in Cell and Developmental Biology. 113, p. 57-64 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    The Role of ZGRF1 in Recombinational Repair and Telomere Stability Maintenance

    Bagge, Keerthana Stine Viswalingam, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 179 p.

    Research output: Book/Report › Ph.D. thesis › Research

  11. Published

    Significantly higher Carabid beetle (Coleoptera: Carabidae) catch in conventionally than in organically managed Christmas tree plantations

    Bagge, S., Lund, M., Rønn, Regin, Thomsen, P. F. & Ekelund, Flemming, 2012, In: Journal of Entomological Science. 47, 2, p. 110-124 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis

    Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Thorén, L. A. M., Jendholm, L. J., Winther, Ole & Porse, Bo Torben, 2013, In: Nucleic Acids Research. 41, Database issue, p. D1034-D1039 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Aberrant Gene Expression in Acute Myeloid Leukaemia

    Bagger, F. O., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  14. Published

    HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis

    Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Jendholm, L. J., Winther, O. & Porse, Bo Torben, 2012, In: Blood. 119, 26, p. 6394-6395 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  15. Published

    BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

    Bagger, F. O., Sasivarevic, D., Hadi Sohi, S., Laursen, L. G., Pundhir, Sachin, Sønderby, C. K., Winther, Ole, Rapin, N. & Porse, Bo Torben, 4 Jan 2016, In: Nucleic Acids Research. 44, D1, p. D917-24 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Analysis of telomerase target gene expression effects from murine models in patient cohorts by homology translation and random survival forest modeling

    Bagger, F. O., Bruedigam, C. & Lane, S. W., 2016, In: Genomics Data. 7, p. 275-280 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer

    Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Aggressiveness of non-EMT breast cancer cells relies on FBXO11 activity

    Bagger, Sofie Morsing, Hopkinson, B. M., Pandey, D. P., Bak, M., Brydholm, A. V., Villadsen, René, Helin, K., Rønnov-Jessen, Lone, Petersen, Ole William & Kim, Jiyoung, 2018, In: Molecular Cancer. 17, 1, p. 1-6 6 p., 171.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  19. Published

    Molecular phylogeny and toxin profiles of Alexandrium tamarense (Lebour) Balech (Dinophyceae) from the west coast of Greenland

    Baggesen, C., Moestrup, Øjvind, Daugbjerg, Niels, Krock, B., Cembella, A. D. & Madsen, S., 2012, In: Harmful Algae. 19, p. 108-116 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Phenological stage of tundra vegetation controls bidirectional exchange of BVOCs in a climate change experiment on a subarctic heath

    Baggesen, N., Li, Tao, Seco, Roger, Holst, T., Michelsen, Anders & Rinnan, Riikka, 2021, In: Global Change Biology. 27, 12, p. 2928-2944 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Bidirectional Exchange of Biogenic Volatile Organic Compounds in Subarctic Heath Mesocosms During Autumn Climate Scenarios

    Baggesen, N. S., Davie-Martin, Cleo Lisa, Seco, Roger, Holst, T. & Rinnan, Riikka, 2022, In: Journal of Geophysical Research: Biogeosciences. 127, 6, 20 p., e2021JG006688.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Bidirectional exchange of biogenic volatile organic compounds between subarctic heath tundra and the atmosphere

    Baggesen, N. S., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 202 p.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Remotely controlled fusion of selected vesicles and living cells

    Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 15 Dec 2017, In: Proceedings of SPIE. 9922, p. 992211-1

    Research output: Contribution to journal › Conference article › Research › peer-review

  24. Published

    Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. & Sørensen, Søren Johannes, 2007, In: Applied and Environmental Microbiology. 73, 1, p. 341-343

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains: Genomes in Flux

    Bahl, M. I., Oregaard, G., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2009, Horizontal Gene Transfer. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 257-268 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  26. Published

    In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. R. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 4, p. 1112-1117

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry

    Bahl, M. I., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2004, In: FEMS Microbiology Letters. 232, 1, p. 45-49

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant

    Bahl, M. I., Burmølle, Mette, Meisner, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Plasmid. 62, 2, p. 134-139 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: FEMS Microbiology Letters. 253, 2, p. 201-205

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: FEMS Microbiology Letters. 266, p. 250-256

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Persistence Mechanisms of Conjugative Plasmids

    Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, Horizontal Gene Transfer: Genomes in Flux. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 73-102 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  32. Published

    The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups

    Bahl, M. I., Hansen, Lars Hestbjerg, Goesmann, A. & Sørensen, Søren Johannes, 2007, In: Plasmid. 58, 1, p. 31-43

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats

    Bahl, M. I., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Licht, T. R., 2004, In: Applied and Environmental Microbiology. 70, 2, p. 758-764

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Detecting bird’s eggs in the diet of raccoon dog (Nyctereutes procyonoides)

    Bahlke, S. Ø., Nash, David Richard, Pedersen, Jes Søe, Hansen, Mette Sif, Chriél, M. & Pagh, S., 2021, In: Genetics and Biodiversity Journal. 5, 2, p. 127-139 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales

    Bahram, M., Koljalg, U., Courty, P., Diedhiou, A. G., Kjøller, Rasmus, Polme, S., Ryberg, M., Veldre, V. & Tedersoo, L., 2013, In: Journal of Ecology. 101, 5, p. 1335-1344 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    An update on principles of m6A targeting

    Bai, B., 2022, In: Trends in Plant Science. 27, 3, p. 224-226 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Bending during seedling emergence: Mechanochemical insight

    Bai, B., 2021, In: Trends in Plant Science. 26, 9, p. 879-881 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  38. Published

    Association analysis of genetic variants with type 2 diabetes in a mongolian population in China

    Bai, H., Liu, H., Suyalatu, S., Guo, X., Chu, S., Chen, Y., Lan, T., Borjigin, B., Orlov, Y. L., Posukh, O. L., Yang, X., Guilan, G., Osipova, L. P., Wu, Q. & Narisu, N., 2015, In: Journal of Diabetes Research. 2015, 7 p., 613236.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    The genome of a Mongolian individual reveals the genetic imprints of Mongolians on modern human populations

    Bai, H., Guo, X., Zhang, D., Narisu, N., Bu, J., Jirimutu, J., Liang, F., Zhao, X., Xing, Y., Wang, D., Li, T., Zhang, Y., Guan, B., Yang, X., Yang, Z., Shuangshan, S., Su, Z., Wu, H., Li, W., Chen, M. & 18 others, Zhu, S., Bayinnamula, B., Chang, Y., Gao, Y., Lan, T., Suyalatu, S., Huang, H., Su, Y., Chen, Y., Li, W., Yang, X., Feng, Q., Wang, J., Yang, H., Wang, J., Wu, Q., Yin, Y. & Zhou, H., 2014, In: Genome Biology and Evolution. 6, 12, p. 3122-3136 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia

    Bai, H., Guo, X., Narisu, N., Lan, T., Wu, Q., Xing, Y., Zhang, Y., Bond, S. R., Pei, Z., Zhang, Y., Zhang, D., Jirimutu, J., Zhang, D., Yang, X., Morigenbatu, M., Zhang, L., Ding, B., Guan, B., Cao, J., Lu, H. & 38 others, Liu, Y., Li, W., Dang, N., Jiang, M., Wang, S., Xu, H., Wang, D., Liu, C., Luo, X., Gao, Y., Li, X., Wu, Zongze, Yang, L., Meng, F., Ning, X., Hashenqimuge, H., Wu, K., Wang, B., Suyalatu, S., Liu, Y., Ye, C., Wu, H., Leppälä, K., Li, L., Fang, L., Chen, Y., Xu, W., Li, T., Liu, X., Xu, X., Gignoux, C. R., Yang, H., Brody, L. C., Wang, J., Kristiansen, Karsten, Burenbatu, B., Zhou, H. & Yin, Y., 2018, In: Nature Genetics. 50, 12, p. 1696-1704

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

    Baillie, J. K., Bretherick, A., Haley, C. S., Clohisey, S., Gray, A., Neyton, L. P. A., Barrett, J., Stahl, E. A., Tenesa, A., Andersson, R., Brown, J. B., Faulkner, G. J., Lizio, M., Schaefer, U., Daub, C., Itoh, M., Kondo, N., Lassmann, T., Kawai, J., Mole, D. & 14 others, Bajic, V. B., Heutink, P., Rehli, M., Kawaji, H., Sandelin, Albin Gustav, Suzuki, H., Satsangi, J., Wells, C. A., Hacohen, N., Freeman, T. C., Hayashizaki, Y., Carninci, P., Forrest, A. R. R. & Hume, D. A., 2018, In: PLoS Computational Biology. 14, 3, 24 p., e1005934.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Screening of diatoms producing domoic acid and its derivatives in the Philippines. Coastal Marine Science 30

    Bajarias, F. A., Kotaki, Y., Relox, J. R., Romero, M. L. J., Furio, E. F., Lundholm, Nina, Koike, K. & Fukuyo, Y., 2006, In: Coastal Marine Science. 30/1, p. 121-129

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Effects of hyperinsuline,ia and hyperglycemia on insulin receptor function and glycogen synthase Activation in skeletal muscle or normal man

    Bak, J. F., Møller, N., Schmitz, O., Richter, Erik A. & Pedersen, O., 1991, In: Metabolism. Vol.40, nr.8, p. 830-5

    Research output: Contribution to journal › Journal article › Research

  44. Published

    Energy use and emission of greenhouse gases from grassland agriculture systems. Grasslands and Society

    Bakken, L. R., Refsgaard, K., Christensen, Søren & Vatn, A., 1994, Proceedings of European Grassland Society. Wageningen Press

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  45. Published

    Production Conditions, Behaviour and Welfare of Farm Foxes

    Bakken, M., Jeppesen, L. L. & Pedersen, V., 1994, In: Scientifur. Bd. 18, No 4, p. 233-248

    Research output: Contribution to journal › Journal article › Research

  46. Published

    Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

    Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    On the origin of regulatory elements: Computational analyses of transposable elements in pluripotency and development

    Bakoulis, Stylianos, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/Report › Ph.D. thesis › Research

  48. Published

    The dipeptidyl peptidase IV inhibitor vildagliptin suppresses endogenous glucose production and enhances islet function after single-dose administration in type 2 diabetic patients.

    Balas, B., Baig, M. R., Watson, C., Dunning, B. E., Ligueros-Saylan, M., Wang, Y., He, Y., Darland, C., Holst, Jens Juul, Deacon, Carolyn F., Cusi, K., Mari, A., Foley, J. E. & DeFronzo, R. A., 2007, In: Journal of Clinical Endocrinology and Metabolism. 92, 4, p. 1249-55 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

    Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

    Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, Joseph, Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.

    Research output: Contribution to journal › Journal article › Research › peer-review

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