- Published
Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers
Xie, Y., Ruan, F., Li, Y., Luo, M., Zhang, C., Chen, Z., Xie, Z., Weng, Z., Chen, W., Chen, W., Fang, Y., Sun, Y., Guo, M., Wang, J., Xu, S., Wang, H. & Tang, C., 2024, In: eLife. 12, 20 p., RP87868.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Noninvasive prenatal paternity testing by maternal plasma DNA sequencing in twin pregnancies
Xie, Y., Qu, N., Lin, S., Jiang, H., Zhang, Y., Zhang, X., Liang, H., Chen, F. & Ou, X., 2020, In: Electrophoresis. 41, 12, p. 1095-1102Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Xie, Y., Wu, G., Tang, J., Luo, R., Patterson, J., Liu, S., Huang, W., He, G., Gu, S., Li, S., Zhou, X., Lam, T., Li, Y., Xu, X., Wong, G. K. & Wang, J., 2014, In: Bioinformatics. 30, 12, p. 1660-1666 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sulfolobus Replication Factor C stimulates the activity of DNA Polymerase B1
Xing, X., Zhang, L., Guo, L., She, Q. & Huang, L., 2014, In: Journal of Bacteriology. 196, 13, p. 2367-2375 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RED-ML: a novel, effective RNA editing detection method based on machine learning
Xiong, H., Liu, D., Li, Q., Lei, M., Xu, L., Wu, L., Wang, Z., Ren, S., Li, W., Xia, M., Lu, L., Lu, H., Hou, Y., Zhu, S., Liu, X., Sun, Y., Wang, J., Yang, H., Wu, K., Xu, X. & 1 others, , May 2017, In: GigaScience. 6, 5, p. 1-8 8 p., gix012.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Chord: an ensemble machine learning algorithm to identify doublets in single-cell RNA sequencing data
Xiong, K., Zhou, H., Lin, C., Yin, J., Kristiansen, Karsten, Yang, H. & Li, G., 2022, In: Communications Biology . 5, 11 p., 510.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An esophageal squamous cell carcinoma classification system that reveals potential targets for therapy
Xiong, T., Wang, M., Zhao, J., Liu, Q., Yang, C., Luo, W., Li, X., Yang, H., Kristiansen, Karsten, Roy, B. & Zhou, Y., 25 Jul 2017, In: OncoTarget. 8, 30, p. 49851-49860 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel tRNA Gene Rearrangements in the Mitochondrial Genomes of Poneroid Ants and Phylogenetic Implication of Paraponerinae (Hymenoptera: Formicidae)
Xiong, Z., He, Ding, Guang, X. & Li, Q., 2023, In: Life. 13, 10, 17 p., 2068.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome of the leopard gecko, Eublepharis macularius
Xiong, Z., Li, F., Li, Q., Zhou, L., Gamble, T., Zheng, J., Kui, L., Li, C., Li, S., Yang, H. & KU, thw266, 2016, In: GigaScience. 5, 6 p., 47.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Survival and Genome Diversity of Vibrio parahaemolyticus Isolated from Edible Aquatic Animals
Xu, D., Peng, Xu, Xie, L. & Chen, L., 2022, In: Diversity. 14, 5, 23 p., 350.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of Next-generation Sequencing Technology in Reproductive/Developmental Sciences and Diagnostics
Xu, F., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Mucosal vaccination with heterologous viral vectored vaccine targeting subdominant SIV accessory antigens strongly inhibits early viral replication
Xu, H., Andersson, A. C., Ragonnaud, Emeline, Boilesen, D., Tolver, Anders, Jensen, Benjamin Anderschou Holbech, Blanchard, J. L., Nicosia, A., Folgori, A., Colloca, S., Cortese, R., Thomsen, Allan Randrup, Christensen, Jan Pravsgaard, Veazey, R. S. & Holst, Peter Johannes, Apr 2017, In: EBioMedicine. 18, p. 204–215 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
Xu, H., Zhen, Q., Bai, M., Fang, L., Zhang, Y., Li, B., Ge, H., Moon, S., Chen, W., Fu, W., Xu, Q., Zhou, Y., Yu, Y., Lin, L., Yong, L., Zhang, T., Chen, S., Liu, S., Zhang, H., Chen, R. & 8 others, , 2021, In: Genome Research. 31, 7, p. 1150-1158 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptomic Profile of the Mouse Postnatal Liver Development by Single-Nucleus RNA Sequencing
Xu, J., Hao, S., Shi, Q., Deng, Q., Jiang, Y., Guo, P., Yuan, Y., Shi, X., Shangguan, S., Zheng, H., Lai, G., Huang, Y., Wang, Y., Song, Y., Liu, Y., Wu, L., Wang, Z., Cheng, J., Wei, X., Cheng, M. & 6 others, , 2022, In: Frontiers in Cell and Developmental Biology. 10, 11 p., 833392.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A spatiotemporal atlas of mouse liver homeostasis and regeneration
Xu, J., Guo, P., Hao, S., Shangguan, S., Shi, Q., Volpe, G., Huang, K., Zuo, J., An, J., Yuan, Y., Cheng, M., Deng, Q., Zhang, X., Lai, G., Nan, H., Wu, B., Shentu, X., Wu, L., Wei, X., Jiang, Y. & 38 others, , 2024, In: Nature Genetics. 56, p. 953-969 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinctly different behavioral responses of a copepod, Temora longicornis, to different strains of toxic dinoflagellates, Alexandrium spp.
Xu, J., Hansen, Per Juel, Nielsen, L. T., Krock, B., Tillmann, U. & Kiørboe, T., Feb 2017, In: Harmful Algae. 62, p. 1-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct nutritional and endocrine regulation of prothoracic gland activities underlies divergent life history strategies in Manduca sexta and Drosophila melanogaster
Xu, L. C., Nunes, C., Wang, V. R., Saito, A., Chen, T., Basak, P., Chang, J. J., Koyama, Takashi & Suzuki, Y., 2020, In: Insect Biochemistry and Molecular Biology. 119, 13 p., 103335.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and microbial factors affect the prognosis of anti-pd-1 immunotherapy in nasopharyngeal carcinoma
Xu, L., Ma, Y., Fang, Chao, Peng, Z., Gao, F., Moll, J. M., Qin, S., Yu, Q., Hou, Y., Kristiansen, Karsten, Fang, W., Brix, S. & Zhang, L., 2022, In: Frontiers in Oncology. 12, 11 p., 953884.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds
Xu, L., Auer, G., Peona, V., Suh, A., Deng, Y., Feng, S., KU, thw266, Blom, M. P. K., Christidis, L., Prost, S., Irestedt, M. & Zhou, Q., 2019, In: Nature Ecology and Evolution. 3, 5, p. 834-844 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association analysis of the MHC in Lupus nephritis
Xu, R., Li, Q., Liu, R., Shen, J., Li, M., Zhao, M., Wang, M., Liao, Q., Mao, H., Li, Z., Zhou, N., Yin, P., Li, Y., Tang, X., Wu, T., Zhong, Z., Wang, Y., Ai, Z., Wang, O., Chen, N. & 23 others, , Nov 2017, In: Journal of the American Society of Nephrology. 28, 11, p. 3383-3394 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Discovery of Anti-defense Genes in Archaea
Xu, Shuanshuan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Two novel truncating variants of the ASPM gene identified in a nonconsanguineous Chinese family associated with primary microcephaly
Xu, S., Zhang, W., Zhou, R., Huang, H., Chen, W., Xiang, W., Liu, L. & Song, J., 2022, In: Clinical Dysmorphology. 31, 1, p. 1-5 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data
Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, T. & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deepened snow in combination with summer warming increases growing season nitrous oxide emissions in dry tundra, but not in wet tundra
Xu, W., Frendrup, L. L., Michelsen, Anders, Elberling, Bo & Ambus, Per Lennart, 2023, In: Soil Biology and Biochemistry. 180, 12 p., 109013.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deepened snow enhances gross nitrogen cycling among Pan-Arctic tundra soils during both winter and summer
Xu, W., Priemé, Anders, Cooper, E. J., Mörsdorf, M. A., Semenchuk, P., Elberling, Bo, Grogan, P. & Ambus, Per Lennart, 1 Sep 2021, In: Soil Biology and Biochemistry. 160, 13 p., 108356.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global beta-diversity of angiosperm trees is shaped by Quaternary climate change
Xu, W. B., Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Enquist, B. J., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A. & 39 others, , 2023, In: Science Advances. 9, 14, 19 p., eadd8553.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary history influences the effects of water-energy dynamics on oak diversity in Asia
Xu, X., Wang, Z., Rahbek, Carsten, Lessard, J. & Fang, J., 2013, In: Journal of Biogeography. 40, 11, p. 2146-2155 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
Xu, X., Liu, X., Ge, S., Jensen, J. D., Hu, F., Li, X., Dong, Y., Gutenkunst, R. N., Fang, L., Huang, L., Li, J., He, W., Zhang, G., Zheng, X., Zhang, F., Li, Y., Yu, C., Kristiansen, K., Zhang, X., Wang, J. & 5 others, , 2012, In: Nature Biotechnology. 30, 1, p. 105-111 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genomic sequence of the chinese hamster ovary (CHO)-K1 cell line
Xu, X., Nagarajan, H., Lewis, N. E., Pan, S., Cai, Z., Liu, X., Chen, W., Xie, M., Wang, W., Hammond, S., Andersen, M. R., Neff, N., Passarelli, B., Koh, W., Fan, H. C., Wang, J., Gui, Y., Lee, K. H., Betenbaugh, M., Quake, S. R. & 3 others, , 2011, In: Nature Biotechnology. 29, 8, p. 735-741 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor: Cell
Xu, X., Hou, Y., Yin, X., Bao, L., Tang, A., Song, L., Li, F., Tsang, S., Wu, K., Wu, H., He, W., Zeng, L., Xing, M., Wu, R., Jiang, H., Liu, X., Cao, D., Guo, G., Hu, X., Gui, Y. & 19 others, , 2012, In: Cell. 148, 5, p. 886-895 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)
Xu, Y., Wang, S., Li, L., Sahu, S. K., Petersen, Morten, Liu, X., Melkonian, M., Zhang, G. & Liu, Huan, 2019, In: Scientific Reports. 9, 10 p., 12485.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Haplotype-based approach for noninvasive prenatal tests of Duchenne muscular dystrophy using cell-free fetal DNA in maternal plasma
Xu, Y., Li, X., Ge, H-J., Xiao, B., Zhang, Y-Y., Ying, X-M., Pan, X-Y., Wang, L., Xie, W-W., Ni, L., Chen, S-P., Jiang, W-T., Liu, P., Ye, H., Cao, Y., Zhang, J-M., Liu, Y., Yang, Z-J., Chen, Y-W., Chen, F. & 2 others, , 2015, In: Genetics In Medicine. 17, 11, p. 889-896 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae
Xu, Y., Li, L., Liang, H., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Liu, Huan, Melkonian, M. & Wang, S., 2019, In: Protist. 170, 6, 6 p., 125684.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four-decade dynamics of the water color in 61 large lakes on the Yangtze Plain and the impacts of reclaimed aquaculture zones
Xu, Yang, Feng, L., Hou, X., Wang, J. & Tang, Jing, 2021, In: Science of the Total Environment. 781, 14 p., 146688.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Embryo genome profiling by single-cell sequencing for preimplantation genetic diagnosis in a β-thalassemia family
Xu, Y., Chen, S., Yin, X., Shen, X., Pan, X., Chen, F., Jiang, H., Liang, Y., Wang, W., Xu, X., Wang, J., Zhang, X., Zhou, C. & Wang, J., 2015, In: Clinical Chemistry. 61, 4, p. 617-626 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
Xu, Y., Moser, Claus Ernst, Abu Al-Soud, W., Sørensen, Søren Johannes, Høiby, Niels, Nielsen, P. H. & Thomsen, T. R., 2012, In: Journal of Clinical Microbiology. 50, 12, p. 3901-3908 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide detection of selection and other evolutionary forces
Xu, Z. & Zhou, R., 2015, Bacterial pangenomics: methods and protocols. Mengoni, A., Galardini, M. & Fondi, M. (eds.). Springer, p. 271-287 17 p. (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
Xu, Z., Hansen, M. A., Hansen, Lars Hestbjerg, Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2014, In: P L o S One. 9, 4, 11 p., e93445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation
Xue, J., Zhou, X., Zhang, C-X., Yu, L-L., Fan, H-W., Wang, Z., Xu, H-J., Xi, Y., Zhu, Z-R., Zhou, W-W., Pan, P-L., Li, B-L., Colbourne, J. K., Noda, H., Suetsugu, Y., Kobayashi, T., Zheng, Y., Liu, S., Zhang, R., Liu, Y. & 21 others, , 2014, In: Genome Biology (Online Edition). 15, 12, 19 p., 521.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
Xue, Y., Prado-Martinez, J., Sudmant, P. H., Narasimhan, V., Ayub, Q., Szpak, M., Frandsen, P., Chen, Y., Yngvadottir, B., Cooper, D. N., de Manuel, M., Hernandez-Rodriguez, J., Lobon, I., Siegismund, H. R., Pagani, L., Quail, M. A., Hvilsom, C., Mudakikwa, A., Eichler, E. E., Cranfield, M. R. & 3 others, , 2015, In: Science (New York, N.Y.). 348, 6231, p. 242-245 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Life cycles of the rhizocephalan Boschmaella japonica Deichmann & Høeg, 1990 (Cirripedia: Chthamalophilidae) and its host barnacle Chthamalus challengeri Hoek, 1883 (Cirripedia: Chthamalidae)
Yabuta, M., Høeg, Jens Thorvald, Yamato, S. & Yusa, Y., 2020, In: Journal of Crustacean Biology. 40, 6, p. 825-832 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
A carbon budget for the Amundsen Sea Polynya, Antarctica: estimating net community production and export in a highly productive polar ecosystem
Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Ducklow, H. W., Schofield, O. M. E., Ingall, E. D., Wilson, S. E., Lowry, K. E., Williams, C. M., Riemann, L., Bertilsson, S., Alderkamp, A-C., Dinasquet, J. V., Logares, R., Richert, I., Sipler, R. E., Melara, A. J., Mu, L., Newstead, R. G., Post, A. F. & 2 others, , 2016, In: Elementa : Science of the Anthropocene. 4, 36 p., 000140.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ASPIRE: The Amundsen Sea Polynya International Research Expedition
Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Alderkamp, A., Schofield, O., Abrahamsen, E. P., Arrigo, K. R., Bertilsson, S., Garay, D. L., Guerrero, R., Lowry, K. E., Moksnes, P., Ndungu, K., Post, A. F., Randall-Goodwin, E., Riemann, Lasse, Severmann, S., Thatje, S., Dijken, G. L. V. & Wilson, S., 2012, In: Oceanography. 25, 3, p. 40-53 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of sex determination and sexually dimorphic larval sizes in parasitic barnacles
Yamaguchi, S., Høeg, Jens Thorvald & Iwasa, Y., 2014, In: Journal of Theoretical Biology. 347, p. 7-16 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Neuroendocrine control of Drosophila larval light preference
Yamanaka, N., Romero, N. M., Martin, F. A., Rewitz, Kim, Sun, M., O´Connor, M. B. & Léopold, P., 2013, In: Science. 341, 6150, p. 1113-1116 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Anatomical adaptations to gradients in soil water of wild species of Poaceae
Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2019, p. 25. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress
Yamauchi, T., Colmer, T. D., Pedersen, Ole & Nakazono, M., 2018, In: Plant Physiology. 176, 2, p. 1118-1130Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Key root traits of Poaceae for adaptation to soil water gradients
Yamauchi, T., Pedersen, Ole, Nakazono, M. & Tsutsumi, N., 2021, In: New Phytologist. 229, 6, p. 3133-3140Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular mechanisms that underlie the root cortex expansion in response to low oxygen
Yamauchi, T., Sumi, K., Morishita, H., Pedersen, Ole, Inukai, Y. & Nakazono, M., 2022, p. 22.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques
Yan, G., Zhang, G., Fang, X., Zhang, Y., Li, C., Ling, F., Cooper, D. N., Li, Q., Li, Y., van Gool, A. J., Du, H., Chen, J., Chen, R., Zhang, P., Huang, Z., Thompson, J. R., Meng, Y., Bai, Y., Wang, J., Zhuo, M. & 26 others, , 2011, In: Nature Biotechnology. 29, 11, p. 1019-1023 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates
Yan, L., Jin, Y., Zhang, B., Xu, Y., Peng, Xu, Qin, S. & Chen, L., 2022, In: Frontiers in Microbiology. 13, 21 p., 896767.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A combined algorithm for automated drainage network extraction from digital elevation models
Yan, Y., Tang, Jing & Pilesjo, P., 2018, In: Hydrological Processes. 32, 10, p. 1322-1333 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A draft genome assembly of spotted hyena, Crocuta crocuta
Yang, C., Li, F., Xiong, Z., Koepfli, K., Ryder, O., Perelman, P., Li, Q. & KU, thw266, 2020, In: Scientific Data. 7, 10 p., 126.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Callithrix jacchus (the common marmoset)
Yang, Chentao & KU, thw266, 2021, In: Trends in Genetics. 37, 10, p. 948-949 2 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Evolutionary and biomedical insights from a marmoset diploid genome assembly
Yang, C., Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., Deng, Y., Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J., Wood, J. & 13 others, , 2021, In: Nature. 594, p. 227-233Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of fecal DNA extraction protocols for metagenomic studies
Yang, F., Sun, J., Luo, H., Ren, H., Zhou, H., Lin, Y., Han, Mo, Chen, B., Liao, H., Brix, S., Li, J., Yang, H., Kristiansen, Karsten & Zhong, H., 2020, In: GigaScience. 9, 7, 12 p., giaa071.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Preparation and evaluation of camptothecin granules for molluscacidal activity
Yang, H. S., Sun, C. X., Li, Tao, Li, G. J., Ke, W. S. & Sun, Q. X., Sep 2017, In: Allelopathy Journal. 42, 1, p. 145-155 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Elusive cats in our backyards: persistence of the North Chinese leopard (Panthera pardus japonensis) in a human-dominated landscape in central China
Yang, H., Xie, Bing, Zhao, G., Gong, Y., Mou, P., Ge, J. & Feng, L., 2021, In: Integrative Zoology. 16, 1, p. 67-83 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Sinocyclocheilus cavefish genome provides insights into cave adaptation
Yang, J., Chen, X., Bai, J., Fang, D., Qiu, Y., Jiang, W., Yuan, H., Bian, C., Lu, J., He, S., Pan, X., Zhang, Y., Wang, X., You, X., Wang, Y., Sun, Y., Mao, D., Liu, Y., Fan, G., Zhang, H. & 21 others, , 2016, In: B M C Biology. 14, 13 p., 1.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prophage-Related Gene VpaChn25_0724 Contributes to Cell Membrane Integrity and Growth of Vibrio parahaemolyticus CHN25
Yang, L., Wang, Y., Yu, P., Ren, S., Zhu, Z., Jin, Y., Yan, J., Peng, Xu & Chen, L., 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 18 p., 595709.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrating convolution and self-attention improves language model of human genome for interpreting non-coding regions at base-resolution
YANG, Meng, Huang, L., Huang, H., Tang, H., Zhang, N., Yang, H., Wu, J. & Mu, F., 2022, In: Nucleic Acids Research. 50, 14, 19 p., e81.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
TrustGWAS: A full-process workflow for encrypted GWAS using multi-key homomorphic encryption and pseudorandom number perturbation
YANG, Meng, Zhang, C., Wang, X., Liu, X., Li, S., Huang, J., Feng, Z., Sun, X., Chen, F., Yang, S., Ni, M., Li, L., Cao, Y. & Mu, F., 2022, In: Cell Systems. 13, 9, p. 752-767.e6 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale
YANG, Meng, Yang, Y., Xie, C., Ni, M., Liu, J., Yang, H., Mu, F. & Wang, J., 2022, In: Nature Machine Intelligence. 4, 8, p. 696-709 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo
Yang, M., Woolfenden, H. C., Zhang, Y., Fang, X., Liu, Q., Vigh, Maria Louisa, Cheema, J., Yang, X., Norris, M., Yu, S., Carbonell, A., Brodersen, Peter, Wang, J. & Ding, Y., 2020, In: Nucleic Acids Research. 48, 15, p. 8767-8781 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis
Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance
Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Analyses of 3,654 Plastid Genomes Unravel Insights Into Evolutionary Dynamics and Phylogenetic Discordance of Green Plants
Yang, T., Sahu, S. K., Yang, L., Liu, Y., Mu, W., Liu, X., Strube, M. L., Liu, Huan & Zhong, B., 2022, In: Frontiers in Plant Science. 13, 13 p., 808156.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biological 12C-13C fractionation increases with increasing community-complexity in soil microcosms
Yang, W., Magid, Jakob, Christensen, Søren, Rønn, Regin, Ambus, Per Lennart & Ekelund, Flemming, 2014, In: Soil Biology & Biochemistry. 69, p. 197-201 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Turnover and isotopic fractionation of carbon from maize leaves as influenced by clay type and content in constructed soil media
Yang, W., Bruun, Sander, Rønn, Regin, Ekelund, Flemming & Magid, Jakob, 2016, In: Biology and Fertility of Soils. 52, 4, p. 447-454 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Steroid receptor coactivator-1 modulates the function of Pomc neurons and energy homeostasis
Yang, Y., van der Klaauw, A. A., Zhu, L., Cacciottolo, T. M., He, Y., Stadler, L. K. J., Wang, C., Xu, P., Saito, K., Hinton, A., Yan, X., Keogh, J. M., Henning, E., Banton, M. C., Hendricks, A. E., Bochukova, E. G., Mistry, V., Lawler, K. L., Liao, L., Xu, J. & 306 others, , 2019, In: Nature Communications. 10, 14 p., 1718.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome of the Marco Polo Sheep (Ovis ammon polii)
Yang, Y., Wang, Y., Zhao, Y., Zhang, X., Li, R., Chen, L., KU, thw266, Jiang, Y., Qiu, Q., Wang, W., Wei, H. & Wang, K., Dec 2017, In: GigaScience. 6, 12, 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A genetic mechanism for convergent skin lightening during recent human evolution
Yang, Z., Zhong, H., Chen, J., Zhang, X., Zhang, H., Luo, X., Xu, S., Chen, H., Lu, D., Han, Y., Li, J., Fu, L., Qi, X., Peng, Y., Xiang, K., Lin, Q., Guo, Y., Li, M., Cao, X., Zhang, Y. & 18 others, , 2016, In: Molecular Biology and Evolution. 33, 5, p. 1177-1187 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
Yang, Z., Wong, W. S. W. & Nielsen, Rasmus, 2005, In: Molecular Biology and Evolution. 22, 4, p. 1107-1118Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage
Yang, Z. & Nielsen, Rasmus, 2008, In: Molecular Biology and Evolution. 25, 3, p. 568-79 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In defense of statistical methods for detecting positive selection
Yang, Z., Nielsen, Rasmus & Goldman, N., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 36, p. E95Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Surprising leopard restoration in fragmented ecosystems reveals connections as the secret to conservation success
Yanwen, F., Guojing, Z., Wenqian, D., Yue, W., Jiawei, L., Mengyu, T., Yan, L., Haoran, L., Bing, X., Xiao, J., Enyu, F., Lulu, Z., Jian, C., Lei, Y., Chenghao, W., Yongfeng, C., Guoqiang, C., Yong, Z., Kezi, L., Haitao, Y. & 4 others, , 2023, In: Science of the Total Environment. 858, 8 p., 159790.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide detection of additional fetal chromosomal abnormalities by cell-free DNA testing of 15,626 consecutive pregnant women
Yao, H., Gao, Y., Zhao, J., Zhang, R., Xu, H., Hu, H., Luo, Y., Yuan, Y., Fu, M., Zhang, H., Jiang, H., Wang, W., Yang, H., Wang, J., Liang, Z. & Chen, F., 2019, In: Science China Life Sciences. 62, 2, p. 215-224Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cancer Cell Acid Adaptation Gene Expression Response is Correlated to Tumor-Specific Tissue Expression Profiles and Patient Survival
Yao, Jiayi, Czaplinska, D., Ialchina, Renata, Schnipper, J., Liu, B., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2020, In: Cancers. 12, 8, 27 p., 2183.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Octosporella fusispora sp. nov. (Pezizales), with a key to the species of the genus
Yao, Y., Spooner, B. M. & Læssøe, Thomas, 2006, In: Nova Hedwigia: Zeitschrift für Kryptogamenkunde. 82, 3-4, p. 483-487Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Living on fire: Deactivating fire coral polyps for larval settlement and symbiosis in the fire coral-associated barnacle Wanella milleporae (Thoracicalcarea: Wanellinae)
Yap, F. C., Høeg, Jens Thorvald & Chan, B. K. K., 2022, In: Ecology and Evolution. 12, 7, 17 p., e9057.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular mechanisms underlying early endocrine differentiation
Yassin, H. T., 2008, Department of Biology: Museum Tusculanum. 117 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The conserved WW-domain binding sites in Dystroglycan C-terminus are essential but partially redundant for Dystroglycan function
Yatsenko, A. S., Kucherenko, M. M., Pantoja, M., Fischer, K. A., Madeoy, J., Deng, W., Schneider, M., Baumgartner, S., Akey, J., Shcherbata, H. R. & Ruohola-Baker, H., 2009, In: BMC Developmental Biology. 9, p. 18Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multi-block PCA and multi-compartmental study of the metabolic responses to intake of hydrolysed versus intact casein in C57BL/6J mice by NMR-based metabolomics
Yde, C. C., Clausen, M. R., Ditlev, D. B., Lillefosse, H., Madsen, L., Kristiansen, Karsten, Liaset, B. & Bertram, H. C. S., 2014, In: Metabolomics. 10, 5, p. 938-949 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The combined effect of pH and dissolved inorganic carbon concentrations on the physiology of plastidic ciliate Mesodinium rubrum and its cryptophyte prey
Yde Eriksen, C. S., Desmaret Walli, M., Van de Waal, D. B., Helmsing, N. R., Dahl, E. O., Sørensen, Helle & Hansen, Per Juel, 2023, In: Harmful Algae. 129, 11 p., 102509.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The predatory mite Hypoaspis miles: Temperature dependent life table characteristics on a diet of sciarid larrae, Bradysia panperi and B.tritici
Ydergaard, S., Enkegaard, A. & Brødsgaard, H. F., 1997, In: Entomologia Experimentalis et Applicata. 85, p. 177-187Research output: Contribution to journal › Journal article › Research
- Published
The Study of Lung Cancer Personalized Medicine Through Circulating Cell Free DNA Test
Ye, M., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 107 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Comprehensive targeted super-deep next generation sequencing enhances differential diagnosis of solitary pulmonary nodules
Ye, M., Li, S., Huang, W., Wang, C., Liu, L., Liu, J., Liu, J., Pan, H., Deng, Q., Tang, H., Jiang, L., Huang, W., Chen, X., Shao, D., Peng, Z., Wu, R., Zhong, J., Wang, Z., Zhang, X., Kristiansen, K. & 5 others, , 2018, In: Journal of Thoracic Disease. 10, Suppl. 7, p. S820-S829 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expression of calmodulin and calmodulin binding proteins in rat fibroblasts stably transfected with protein kinase C and oncogenes
Ye, Q., Wei, Y., Fischer, R., Borner, C. & Berchtold, Martin Werner, 1997, In: Biochimica et Biophysica Acta - Molecular Cell Research. 1359, 1, p. 89-96 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structure and expression of the chicken calmodulin I gene
Ye, Q. & Berchtold, Martin Werner, 1997, In: Gene. 194, 1, p. 63-8 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ATP-consuming and ATP-generating enzymes secreted by pancreas.
Yegutkin, G. G., Samburski, S. S., Jalkanen, S. & Novak, Ivana, 2006, In: Journal of Biological Chemistry. 281, 40, p. 29441-7 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Disease challenges and defences in leaf-cutting ants
Yek, S. H., 2012, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Differential gene expression in Acromyrmex leaf-cutting ants after challenges with two fungal pathogens
Yek, S. H., Boomsma, Jacobus J. & Schiøtt, M., 2013, In: Molecular Ecology. 22, 8, p. 2173-2187 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The metapleural gland of ants
Yek, S. H. & Mueller, U. G., 2011, In: Biological Reviews. 86, 4, p. 774-91 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation and specificity of antifungal metapleural gland secretion in leaf-cutting ants
Yek, S. H., Nash, David Richard, Jensen, Annette Bruun & Boomsma, Jacobus J., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1745, p. 4215-4222 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Towards a better understanding of the evolution of specialized parasites of fungus-growing ant crops
Yek, S. H., Boomsma, Jacobus J. & Poulsen, Michael, 2012, In: Psyche (Cambridge, 1874). 2012, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The intermediate hosts of Dracunculus medinensis in Northern Region, Ghana
Yelifari, L., Frempong, E. & Olsen, A., 1997, In: Ann.Trop.Med. Parasitology. 91, p. 403-409Research output: Contribution to journal › Journal article › Research
- Published
Using worldwide Reefcheck monitoring datbase to develop coral reef index of biological integrity
Yen, N. T. H., Pedersen, Ole, Ikejima, K., Sunada, K. & Oishi, S., 2007.Research output: Contribution to conference › Paper › Research
- Published
Role of vitamin C and E supplementation on IL-6 in response to training
Yfanti, C., Fischer, C. P., Nielsen, S., Åkerström, T., Nielsen, A. R., Veskoukis, A. S., Kouretas, D., Lykkesfeldt, Jens, Pilegaard, Henriette & Pedersen, Bente Klarlund, 2012, In: Journal of Applied Physiology. 112, 6, p. 990-1000 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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