Department of Biology

 

 
  1. 2024
  2. Published

    Population structure and migration in the Eastern Highlands of Papua New Guinea, a region impacted by the kuru epidemic

    Quinn, Liam James Elgaard, Whitfield, J., Alpers, M. P., Campbell, T., Hummerich, H., Pomat, W., Siba, P., Koki, G., Moltke, Ida, Collinge, J., Hellenthal, G. & Mead, S., 2024, In: American Journal of Human Genetics. 111, 4, p. 668-679 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Positive selection has shaped the evolution of Argentine ant immune genes both in native and introduced supercolonies

    Holmberg, I., Tolonen, L., Paviala, J., Pedersen, Jes Søe, Helanterä, H. & Viljakainen, L., 2024, In: Journal of Evolutionary Biology. 37, 2, p. 131–140 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Postembryonic development and male paedomorphosis in Osedax (Siboglinidae, Annelida)

    Worsaae, Katrine, Rouan, Alice Jeanne Monique Nadja, Seaver, E., Miyamoto, N. & Tilic, E., 2024, In: Frontiers in Neuroscience. 18, 18 p., 1369274.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Predicting peptide–MHC stability and immunogenicity with deep learning

    Prachar, Marek, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 258 p.

    Research output: Book/ReportPh.D. thesisResearch

  6. Published

    Protein kinase C-inhibition reduces critical weight loss and improves functional outcome after experimental subarachnoid haemorrhage

    Bömers, J. P., Holm, A., Kazantzi, Spyridoula, Edvinsson, L., Mathiesen, Tiit Illimar & Haanes, Kristian Agmund, 2024, In: Journal of Stroke and Cerebrovascular Diseases. 33, 7, 11 p., 107728.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Protein variant effect prediction using machine learning

    Blaabjerg, Lasse Møller, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/ReportPh.D. thesisResearch

  8. Published

    Protocol for genomic recombineering in Yersinia ruckeri using CRISPR Cas12a coupled with the λ Red system

    Ejaz, Rooshanie Nadia, Taylor, Nicholas M I & Rebrova, Eva Maria, 2024, In: STAR Protocols. 5, 2, 17 p., 103014.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Reading tea leaves worldwide: Decoupled drivers of initial litter decomposition mass-loss rate and stabilization

    Sarneel, J. M., Hefting, M. M., Sandén, T., van den Hoogen, J., Routh, D., Adhikari, B. S., Alatalo, J. M., Aleksanyan, A., Althuizen, I. H. J., Alsafran, M. H. S. A., Atkins, J. W., Augusto, L., Aurela, M., Azarov, A. V., Barrio, I. C., Beier, C., Bejarano, M. D., Benham, S. E., Berg, B., Bezler, N. V. & 88 others, Björnsdóttir, K., Bolinder, M. A., Carbognani, M., Cazzolla Gatti, R., Chelli, S., Chistotin, M. V., Christiansen, C. T., Courtois, P., Crowther, T. W., Dechoum, M. S., Djukic, I., Duddigan, S., Egerton-Warburton, L. M., Fanin, N., Fantappiè, M., Fares, S., Fernandes, G. W., Filippova, N. V., Fliessbach, A., Fuentes, D., Godoy, R., Grünwald, T., Guzmán, G., Hawes, J. E., He, Y., Hero, J. M., Hess, L. L., Hogendoorn, K., Høye, T. T., Jans, W. W. P., Jónsdóttir, I. S., Keller, S., Kepfer Rojas, Sebastian, Kuz'menko, N. N., Larsen, Klaus Steenberg, Laudon, H., Lembrechts, J. J., Li, J., Limousin, J. M., Lukin, S. M., Marques, R., Marín, C., McDaniel, M. D., Meek, Q., Merzlaya, G. E., Michelsen, Anders, Montagnani, L., Mueller, P., Murugan, R., Myers-Smith, I. H., Nolte, S., Ochoa-Hueso, R., Okafor, B. N., Okorkov, V. V., Onipchenko, V. G., Orozco, M. C., Parkhurst, T., Peres, C. A., Petit Bon, M., Petraglia, A., Pingel, M., Rebmann, C., Scheffers, B. R., Schmidt, Inger Kappel, Scholes, M. C., Sheffer, E., Shevtsova, L. K., Smith, S. W., Sofo, A., Stevenson, P. R., Strouhalová, B., Sundsdal, A., Sühs, R. B., Tamene, G., Thomas, H. J. D., Tolunay, D., Tomaselli, M., Tresch, S., Tucker, D. L., Ulyshen, M. D., Valdecantos, A., Vandvik, V., Vanguelova, E. I., Verheyen, K., Wang, X., Yahdjian, L., Yumashev, X. S. & Keuskamp, J. A., 2024, In: Ecology Letters. 27, 5, 14 p., e14415.

    Research output: Contribution to journalLetterResearchpeer-review

  10. Published

    Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

    Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Recommendations for Bioinformatic Tools in lncRNA Research

    Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

    Research output: Contribution to journalReviewResearchpeer-review

  12. Published

    Reconstructing colonization dynamics to establish how human activities transformed island biodiversity

    Tomlinson, S., Lomolino, M. V., Anderson, A., Austin, J. J., Brown, S. C., Haythorne, S., Perry, G. L. W., Wilmshurst, J. M., Wood, J. R. & Fordham, D. A., 2024, In: Scientific Reports. 14, 1, 13 p., 5261.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

    Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Regulation of polycystin-2 trafficking to and at the primary cilium in kidney epithelial cells

    Rezi, Csenge Kata, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 188 p.

    Research output: Book/ReportPh.D. thesisResearch

  15. Published

    Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

    Bhoobalan, Yuvaraj, Xu, Shuanshuan, Martinez Alvarez, Laura, Karamycheva, S., Makarova, K. S., Koonin, E. V. & Peng, Xu, 2024, In: Nature Communications. 15, 1, 13 p., 3699.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Relationship between the female cervico-vaginal microbiome and women’s health

    Chen, Chen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 141 p.

    Research output: Book/ReportPh.D. thesisResearch

  17. Published

    Removal from the wild endangers the once widespread long-tailed macaque

    Gamalo, L. E., Ilham, K., Jones-Engel, L., Gill, M., Sweet, R., Aldrich, B., Phiapalath, P., Van Bang, T., Ahmed, T., Kite, S., Paramasivam, S., Seiha, H., Zainol, M. Z., Nielsen, D. R. K., Ruppert, N., Fuentes, A. & Hansen, Malene Friis, 2024, In: American Journal of Primatology. 86, 3, 10 p., e23547.

    Research output: Contribution to journalComment/debateResearchpeer-review

  18. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Root acclimations to soil flooding prime rice (Oryza sativa L.) for subsequent conditions of water deficit

    Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa, Liu, Fulai, Tomasella, M., Nardini, A. & Pedersen, Ole, 2024, In: Plant and Soil. 494, p. 529-546

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Seafloor primary production in a changing Arctic Ocean

    Attard, K., Singh, R. K., Gattuso, J. P., Filbee-Dexter, K., Krause-Jensen, D., Kühl, Michael, Sejr, M. K., Archambault, P., Babin, M., Bélanger, S., Berg, P., Glud, R. N., Hancke, K., Jänicke, S., Qin, J., Rysgaard, S., Sørensen, E. B., Tachon, F., Wenzhöfer, F. & Ardyna, M., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 11, 10 p., e2303366121.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

    Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Short- and long-term plant and microbial uptake of 15N-labelled urea in a mesic tundra heath, West Greenland

    Barthelemy, H., Nobel, L. A., Stark, S., Väisänen, M., Olofsson, J. & Michelsen, Anders, 2024, In: Polar Biology. 47, p. 1-15 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers

    Xie, Y., Ruan, F., Li, Y., Luo, M., Zhang, C., Chen, Z., Xie, Z., Weng, Z., Chen, W., Chen, W., Fang, Y., Sun, Y., Guo, M., Wang, J., Xu, S., Wang, H. & Tang, C., 2024, In: eLife. 12, 20 p., RP87868.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Spatially resolved analysis of microenvironmental gradient impact on cancer cell phenotypes

    Auxillos, Jamie Yam, Crouigneau, R., Li, Y. F., Dai, Yifan, Stigliani, Arnaud, Tavernaro, I., Resch-Genger, U., Sandelin, Albin Gustav, Marie, R. & Pedersen, Stine Helene Falsig, 2024, In: Science Advances. 10, 18, 17 p., eadn3448.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Strong individual distinctiveness across the vocal repertoire of a colonial seabird, the little auk, Alle alle

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-Jakubas, K., 2024, In: Animal Behaviour. 210, p. 199-211 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Structure of a metacommunity of urban bees: Species diversity and spatio-temporal modularity

    Dupont, Y. L., Greve, M. B., Madsen, Henning Bang, Rasmussen, C., Timóteo, S. & Olesen, J. M., 2024, In: Basic and Applied Ecology. 77, p. 45-56 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation

    Wang, D., Yang, X., Ren, Z., Hu, B., Zhao, H., Yang, K., Shi, P., Zhang, Z., Feng, Q., Nawenja, C. V., Obanda, V., Robert, K., Nalikka, B., Waruhiu, C. N., Ochola, G. O., Onyuok, S. O., Ochieng, H., Li, B., Zhu, Y., Si, H. & 9 others, Yin, J., Kristiansen, Karsten, Jin, X., Xu, X., Xiao, M., Agwanda, B., Ommeh, S., Li, J. & Shi, Z. L., 2024, In: Microbiome. 12, 1, 17 p., 72.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli

    Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    The Advancement in Spring Vegetation Phenology in the Northern Hemisphere Will Reverse After 2060 Under Future Moderate Warming Scenarios

    Mo, Y., Chen, S., Wu, Z., Tang, Jing & Fu, Y., 2024, In: Earth's Future. 12, 3, 17 p., e2023EF003788.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    The Arctic Plant Aboveground Biomass Synthesis Dataset

    Berner, L. T., Orndahl, K. M., Rose, M., Tamstorf, M., Arndal, M. F., Alexander, H. D., Humphreys, E. R., Loranty, M. M., Ludwig, S. M., Nyman, J., Juutinen, S., Aurela, M., Happonen, K., Mikola, J., Mack, M. C., Vankoughnett, M. R., Iversen, C. M., Salmon, V. G., Yang, D., Kumar, J. & 34 others, Grogan, P., Danby, R. K., Scott, N. A., Olofsson, J., Siewert, M. B., Deschamps, L., Lévesque, E., Maire, V., Morneault, A., Gauthier, G., Gignac, C., Boudreau, S., Gaspard, A., Kholodov, A., Bret-Harte, M. S., Greaves, H. E., Walker, D., Gregory, F. M., Michelsen, Anders, Kumpula, T., Villoslada, M., Ylänne, H., Luoto, M., Virtanen, T., Forbes, B. C., Hölzel, N., Epstein, H., Heim, R. J., Bunn, A., Holmes, R. M., Hung, J. K. Y., Natali, S. M., Virkkala, A. M. & Goetz, S. J., 2024, In: Scientific Data. 11, 1, 13 p., 305.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    The Fossils of Speothos Pacivorus (Carnivora: Canidae) at the Peter Lund/Quaternary Collection of the Natural History Museum of Denmark

    Ruiz, J. V., Kyriakouli, C., Gundlach, C., Ferreira, G. S., Machado, F. A., Godoy, P. L., Castro, M. C., Montefeltro, F. C. & Hansen, Kasper Lykke, 2024, In: MorphoMuseuM. 10, 2, p. e229

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    The effect of dairy products on liver fat and metabolic risk markers in males with abdominal obesity – a four-arm randomized controlled trial

    Sandby, Karoline, Magkos, Faidon, Chabanova, E., Petersen, E. T., Krarup, T., Bertram, H. C., Kristiansen, Karsten & Geiker, Nina Rica Wium, 2024, In: Clinical Nutrition. 43, 2, p. 534-542

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    The extrachromosomal circular DNA atlas of aged and young mouse brains

    Hong, X., Li, J., Han, Peng, Li, S., Yu, J., Zhang, H., Li, J., Dang, Y. & Xiang, X., 2024, In: Scientific Data. 11, 1, 8 p., 318.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published
  36. E-pub ahead of print

    The impact of the migraine treatment onabotulinumtoxinA on inflammatory and pain responses: Insights from an animal model

    Reducha, Philip Victor, Bömers, J. P., Edvinsson, L. & Haanes, Kristian Agmund, 2024, (E-pub ahead of print) In: Headache.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    The molecular basis for cellular function of intrinsically disordered protein regions

    Holehouse, A. S. & Kragelund, Birthe Brandt, 2024, In: Nature Reviews Molecular Cell Biology. 25, p. 187–211 25 p.

    Research output: Contribution to journalReviewResearchpeer-review

  38. Published

    The nightscape of the Arctic winter shapes the diving behavior of a marine predator

    Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    The relationships between biotic uniqueness and abiotic uniqueness are context dependent across drainage basins worldwide

    Snåre, H., García-Girón, J., Alahuhta, J., Bini, L. M., Boda, P., Bonada, N., Brasil, L. S., Callisto, M., Castro, D. M. P., Chen, K., Csabai, Z., Datry, T., Domisch, S., García-Marquez, J. R., Floury, M., Friberg, N., Gill, B. A., González-Trujillo, J. D., Göthe, E., Haase, P. & 29 others, Hamada, N., Hill, M. J., Hjort, J., Juen, L., Jupke, J. F., de Faria, A. P. J., Li, Z., Ligeiro, R., Linares, M. S., Luiza-Andrade, A., Macedo, D. R., Mathers, K. L., Mellado-Diaz, A., Milosevic, D., Moya, N., Poff, N. L. R., Rolls, R. J., Roque, F. O., Saito, V. S., Sandin, L., Schäfer, R. B., Scotti, A., Siqueira, T., Martins, R. T., Valente-Neto, F., Wang, B., Wang, J., Xie, Z. & Heino, J., 2024, In: Landscape Ecology. 39, 4, 18 p., 86.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    The role of neighbour proximity and context on meerkat close call acoustic structure

    Driscoll, I., Briefer, Elodie & Manser, M. B., 2024, In: Animal Behaviour. 212, p. 113-126 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    The rostral micro-tooth morphology of blue marlin, Makaira nigricans

    Pacher, K., Breuker, M., Hansen, M. J., Kurvers, R. H. J. M., Häge, J., Dhellemmes, F., Domenici, P., Steffensen, John Fleng, Krause, S., Hildebrandt, T., Fritsch, G., Bach, P., Sabarros, P. S., Zaslansky, P., Mahlow, K., Müller, J., Armas, R. G., Ortiz, H. V., Galván-Magaña, F. & Krause, J., 2024, In: Journal of Fish Biology. 104, 3, p. 713-722 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    The tick Ixodes scapularis has five different GPCRs specifically activated by ACP (adipokinetic hormone/corazonin-related peptide)

    Hauser, Frank, Stebegg, M., Al-Ribaty, T., Petersen, L. B., Møller, M., Drag, Markus Hodal, Sigurdsson, H. H., Vilhelm, M. J., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2024, In: Biochemical and Biophysical Research Communications. 717, 7 p., 149992.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Translational frontiers: insight from lymphatics in skin regeneration

    Jiang, Y. & Perez-Moreno, Mirna, 2024, In: Frontiers in Physiology. 15, 8 p., 1347558.

    Research output: Contribution to journalReviewResearchpeer-review

  45. Published

    Transmembrane transporter proteins: Capturing transport in motion

    Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  46. Published

    Type XXIII collagen

    Crespo Bravo, Marina, Kehlet, S. N., Jessen, H. & Karsdal, M. A., 2024, Biochemistry of Collagens, Laminins and Elastin: Structure, Function and Biomarkers. 3 ed. Elsevier, p. 199-202 4 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  47. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/ReportPh.D. thesisResearch

  48. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356, 13 p., 120570.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published
  51. Published

    A region of suppressed recombination misleads neoavian phylogenomics

    Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Fremme af spontan vegetation efter gran

    Thomasen, J. M., Kepfer Rojas, Sebastian, Båstrup-Spohr, Lars & Raulund-Rasmussen, Karsten, 22 Apr 2024, 6 p. Institut for Geovidenskab og Naturforvaltning, Københavns Universitet.

    Research output: Other contributionNet publication - Internet publicationCommunication

  53. Published
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