Department of Biology

Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance

Leles, S., Mitra, A., Flynn, K. J., Stoecker, D. K., Hansen, Per Juel, Calbet, A., McManus, G. B., Sanders, R. W., Caron, D. A., Not, F., Hallegraeff, G. M., Pitta, P., Raven, J. A., Johnson, M. D., Glibert, P. M. & Våge, S., 16 Aug 2017, In: Proceedings of the Royal Society B: Biological Sciences. 284, 1860, 6 p., 20170664.

Research output: Contribution to journal › Journal article › Research › peer-review

How common is within-plant signalling via volatiles?

Li, Tao & Blande, J. D., 2017, In: Plant Signalling & Behavior. 12, 8, 3 p., e1347743.

Research output: Contribution to journal › Journal article › Research › peer-review

Volatile-mediated within-plant signaling in hybrid aspen: required for systemic responses

Li, Tao & Blande, J. D., Apr 2017, In: Journal of Chemical Ecology. 43, 4, p. 327-338 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Diversity in the globally distributed diatom genus Chaetoceros (Bacillariophyceae): three new species from warm-temperate waters

Li, Y., Chamnansinp, A., Gaonkar, C. C., Kooistra, W. H. C. F., Lange, C. B., Hernández-Becerril, D., Chen, Z., Moestrup, Øjvind & Lundholm, Nina, 2017, In: PLoS ONE. 12, 1, 38 p., e0168887.

Research output: Contribution to journal › Journal article › Research › peer-review

Cmr1 enables efficient RNA and DNA interference of a III-B CRISPR–Cas system by binding to target RNA and crRNA

Li, Y., Zhang, Y., Lin, Jinzhong, Pan, S., Han, W., Peng, N., Liang, Y. X. & She, Q., 2 Nov 2017, In: Nucleic Acids Research. 45, 19, p. 11305-11314 10 p., gkx791.

Research output: Contribution to journal › Journal article › Research › peer-review

Diffusion or advection? Mass transfer and complex boundary layer landscapes of the brown alga Fucus vesiculosus

Lichtenberg, Mads, Nørregaard, R. D. & Kühl, Michael, Mar 2017, In: Journal of the Royal Society. Interface. 14, 128, 20161015.

Research output: Contribution to journal › Journal article › Research › peer-review

Light sheet microscopy imaging of light absorption and photosynthesis distribution in plant tissue

Lichtenberg, Mads, Trampe, Erik, Vogelmann, T. C. & Kühl, Michael, Oct 2017, In: Plant Physiology. 175, p. 721-733 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Radiative energy budgets of phototrophic surface-associated microbial communities and their photosynthetic efficiency under diffuse and collimated light

Lichtenberg, Mads, Brodersen, Kasper Elgetti & Kühl, Michael, 28 Mar 2017, In: Frontiers in Microbiology. 8, 17 p., 452.

Research output: Contribution to journal › Journal article › Research › peer-review

Maternal use of mild analgesics during pregnancy associated with reduced anogenital distance in sons: a cohort study of 1027 mother-child pairs

Lind, D. V., Main, Katharina Maria, Kyhl, H. B., Kristensen, D. M., Toppari, J., Andersen, H. R., Skovsager Andersen, M., Skakkebæk, Niels Erik & Jensen, T. K., 2017, In: Human Reproduction. 32, 1, p. 223-231 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Prenatal exposure to perfluoroalkyl substances and anogenital distance at 3 months of age in a Danish mother-child cohort

Lind, D. V., Priskorn, L., Lassen, T. H., Nielsen, F., Kyhl, H. B., Kristensen, D. M., Christesen, H. T., Steener Jørgensen, J., Grandjean, P. & Jensen, T. K., Mar 2017, In: Reproductive Toxicology. 68, p. 200-206 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

3Rs tightly intertwined to maintain genome stability

Lisby, Michael & Mortensen, U. H., Jan 2017, In: FEMS Yeast Research. 17, 1, 2 p., fox003.

Research output: Contribution to journal › Editorial › Research

PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity

Liu, G., Li, D., Li, Z., Qiu, S., Li, W., Chao, C., Yang, N., Li, H., Cheng, Z., Song, X., Cheng, L., Zhang, X., Wang, J., Yang, H., Ma, K., Hou, Y. & Li, B., May 2017, In: GigaScience. 6, 5, 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients

Liu, L., Liu, J., Shao, D., Deng, Q., Tang, H., Liu, Z., Chen, X., Guo, F., Lin, Y., Mao, M., Kristiansen, Karsten, Ye, M. & He, J., Dec 2017, In: Cancer Science. 108, 12, p. 2487-2494 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention

Liu, R., Hong, J., Xu, X., Feng, Q., Zhang, D., Gu, Y., Shi, J., Zhao, S., Liu, W., Wang, X., Xia, H., Liu, Z., Cui, B., Liang, P., Xi, L., Jin, J., Ying, X., Wang, X., Zhao, X., Li, W. & 28 others, Jia, H., Lan, Z., Li, F., Wang, R., Sun, Y., Yang, M., Shen, Y., Jie, Z., Li, J., Chen, X., Zhong, H., Xie, H., Zhang, Y., Gu, W., Deng, X., Shen, B., Xu, X., Yang, H., Xu, G., Bi, Y., Lai, S., Wang, J., Qi, L., Madsen, L., Wang, J., Ning, G., Kristiansen, Karsten & Wang, W., Jul 2017, In: Nature Medicine. 23, 7, p. 859-868 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Coupling transcriptional activation of CRISPR–Cas system and DNA repair genes by Csa3a in Sulfolobus islandicus

Liu, T., Liu, Z., Ye, Q., Pan, S., Wang, X., Li, Y., Peng, W., Liang, Y., She, Q. & Peng, N., 2017, In: Nucleic Acids Research. 45, 15, p. 8978–8992 15 p., gkx612.

Research output: Contribution to journal › Journal article › Research › peer-review

Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation

Liu, W., Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Environmental Microbiology. 19, 7, p. 2893-2905 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Lizio, M., Harshbarger, J., Abugessaisa, I., Noguchi, S., Kondo, A., Severin, J., Mungall, C., Arenillas, D., Mathelier, A., Medvedeva, Y. A., Lennartsson, A., Drabløs, F., Ramilowski, J. A., Rackham, O., Gough, J., Andersson, R., Sandelin, A. G., Ienasescu, H-I., Ono, H., Bono, H. & 5 others, Hayashizaki, Y., Carninci, P., Forrest, A. R. R., Kasukawa, T. & Kawaji, H., 2017, In: Nucleic Acids Research. 45, D1, p. D737-D743 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Microplankton biomass and diversity in the Vietnamese upwelling area during SW monsoon under normal conditions and after an ENSO event

Loick-Wilde, N., Bombar, D., Doan, H. N., Nguyen, L. N., Nguyen-Thi, A. M., Voss, M. & Dippner, J. W., Apr 2017, In: Progress in Oceanography. 153, p. 1-15 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Matching NLR immune receptors to autoimmunity in camta3 mutants using antimorphic NLR alleles

Lolle, S., Greeff, M. C., Petersen, K., Roux, M. E., Jensen, M. K., Bressendorff, Simon, Rodriguez, Eleazar, Sømark, K., Mundy, J. & Petersen, Morten, 2017, In: Cell Host & Microbe. 21, 4, p. 518-529 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Circulating FGF21 in humans is potently induced by short term overfeeding of carbohydrates

Lundsgaard, Anne-Marie, Fritzen, Andreas Mæchel, Sjøberg, K. A., Myrmel, L. S., Madsen, L., Wojtaszewski, Jørgen F P, Richter, Erik A. & Kiens, Bente, 2017, In: Molecular Metabolism. 6, 1, p. 22-29 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Opposite regulation of insulin sensitivity by dietary lipid versus carbohydrate excess

Lundsgaard, Anne-Marie, Sjøberg, K. A., Høeg, L. D., Jeppesen, J., Jordy, A. B., Serup, A. K. L., Fritzen, Andreas Mæchel, Pilegaard, Henriette, Myrmel, L. S., Madsen, L., Wojtaszewski, Jørgen F P, Richter, Erik A. & Kiens, Bente, 2017, In: Diabetes. 66, 10, p. 2583-2595 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Species diversity of Protoperidinium sect. Oceanica (Dinophyceae, Peridiniales) in Vietnamese waters, with description of the new species P-larsenii sp nov.

Luom Phan-Tan, Lam Nguyen-Ngoc, Hai Doan-Nhu, Raine, R. & Larsen, Jacob, Apr 2017, In: Nordic Journal of Botany. 35, 2, p. 129-146 18 p.

Research output: Contribution to journal › Journal article › Research › peer-review

PGC-1α in aging and lifelong exercise training-mediated regulation of UPR in mouse liver

Maag Kristensen, C., Brandt, C. T., Jørgensen, Stine Ringholm & Pilegaard, Henriette, Nov 2017, In: Experimental Gerontology. 98, p. 124-133 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Links between dietary protein sources, the gut microbiota, and obesity

Madsen, L., Myrmel, L. S., Fjære, E., Liaset, B. & Kristiansen, Karsten, 19 Dec 2017, In: Frontiers in Physiology. 8, 12 p., 1047.

Research output: Contribution to journal › Review › Research › peer-review

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Visualization and quantification of browning using a Ucp1-2A-Luciferase knock-in mouse model

Mao, L., Nie, B., Nie, T., Hui, X., Gao, X., Lin, X., Liu, X., Xu, Y., Tang, X., Yuan, R., Li, K., Li, P., Ding, K., Wang, Y., Xu, A., Fei, J., Han, W., Liu, P., Madsen, L., Kristiansen, K. & 3 others, Zhou, Z., Ding, S. & Wu, D., Feb 2017, In: Diabetes. 66, 2, p. 407-417 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Eight millennia of matrilineal genetic continuity in the South Caucasus

Margaryan, Ashot, Derenko, M., Hovhannisyan, H., Malyarchuk, B., Heller, Rasmus, Khachatryan, Z., Avetisyan, P., Badalyan, R., Bobokhyan, A., Melikyan, V., Sargsyan, G., Piliposyan, A., Simonyan, H., Mkrtchyan, R., Denisova, G., Yepiskoposyan, L., Willerslev, Eske & Allentoft, Morten Erik, 10 Jul 2017, In: Current Biology. 27, 13, p. 2023-2028 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Characterization of immortalized human brown and white pre-adipocyte cell models from a single donor

Markussen, L. K., Isidor, Marie Sophie, Breining, P., Andersen, E. S., Rasmussen, N. E., Petersen, L. I., Pedersen, S. B., Richelsen, B. & Hansen, Jacob B., 28 Sep 2017, In: PLoS ONE. 12, 9, 17 p., e0185624.

Research output: Contribution to journal › Journal article › Research › peer-review

Patient-specific three-dimensional explant spheroids derived from human nasal airway epithelium: a simple methodological approach for ex vivo studies of primary ciliary dyskinesia

Marthin, J. K., Stevens, E. M., Larsen, Lars Allan, Christensen, Søren Tvorup & Nielsen, Kim G., 23 Mar 2017, In: Cilia. 6, 9 p., 3.

Research output: Contribution to journal › Journal article › Research › peer-review

Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2

Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, Jul 2017, In: Journal of Virology. 91, 13, 12 p., e00486-17.

Research output: Contribution to journal › Journal article › Research › peer-review

Evolution of cave suspension feeding in Protodrilidae (Annelida)

Martinez Garcia, A., Kvindebjerg, K., Iliffe, T. M. & Worsaae, Katrine, Mar 2017, In: Zoologica Scripta. 46, 2, p. 214-226 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

High rates and close diel coupling of primary production and ecosystem respiration in small, oligotrophic lakes

Martinsen, K. T., Andersen, M. R., Kragh, T. & Sand-Jensen, Kaj, Oct 2017, In: Aquatic Sciences. 79, 4, p. 995-1007 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A biogeographical perspective on species abundance distributions: recent advances and opportunities for future research

Matthews, T. J., Borges, P. A. V., de Azevedo, E. B. & Whittaker, R. J., Aug 2017, In: Journal of Biogeography. 44, 8, p. 1705-1710 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Interaction type and intimacy structure networks between forest-dwelling organisms and their host trees

Mazziotta, A., Vizentin-Bugoni, J., Tøttrup, Anders P., Bruun, Hans Henrik, Fritz, Ö. & Heilmann-Clausen, Jacob, Nov 2017, In: Basic and Applied Ecology. 24, p. 86-97 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Partial drying accelerates bacterial growth recovery to rewetting

Meisner, A., Leizeaga, A., Rousk, J. & Bååth, E., Sep 2017, In: Soil Biology & Biochemistry. 112, p. 269-276 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Near-normalization of glycaemic control with glucagon-like peptide-1 receptor agonist treatment combined with exercise in patients with type 2 diabetes

Mensberg, P., Nyby, S., Jørgensen, P. G., Storgaard, H., Jensen, M. T., Sivertsen, J., Holst, Jens Juul, Kiens, Bente, Richter, Erik A., Knop, Filip Krag & Vilsbøll, Tina, 2017, In: Diabetes, Obesity and Metabolism. 19, 2, p. 172-180 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Marine viruses: key players in marine ecosystems

Middelboe, Mathias & Brussaard, C. P. D., Oct 2017, In: Viruses. 9, 10, 6 p., 302.

Research output: Contribution to journal › Editorial › Research

Glacier shrinkage driving global changes in downstream systems

Milner, A. M., Khamis, K., Battin, T. J., Brittain, J. E., Barrand, N. E., Füreder, L., Cauvy-Fraunié, S., Gíslason, G. M., Jacobsen, Dean, Hannah, D. M., Hodson, A. J., Hood, E., Lencioni, V., Ólafsson, J. S., Robinson, C. T., Tranter, M. & Brown, L. E., 12 Sep 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 37, p. 9770-9778 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

TGF-β1 regulates the expression and transcriptional activity of TAZ protein via a Smad3-independent, myocardin-related transcription factor-mediated mechanism

Miranda, M. Z., Bialik, J. F., Speight, P., Dan, Q., Yeung, T., Szaszi, K., Pedersen, Stine Helene Falsig & Kapus, A., 2017, In: Journal of Biological Chemistry. 292, 36, p. 14902-14920 19 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Prenatal exposure to antifungal medication may change anogenital distance in male offspring: a preliminary study

Mogensen, D. M., Pihl, M. B., Skakkebæk, Niels Erik, Andersen, H. R., Juul, Anders, Kyhl, H. B., Swan, S., Kristensen, D. M., Andersen, M. S., Lind, D. V. & Jensen, T. K., 2017, In: Environmental Health. 16, 8 p., 68.

Research output: Contribution to journal › Journal article › Research › peer-review

EZH2 is a potential therapeutic target for H3K27M-mutant pediatric gliomas

Mohammad, F., Weissmann, S., Leblanc, B. O., Pandey, D. P., Højfeldt, J. W., Comet, I., Zheng, C., Johansen, Jens Vilstrup, Rapin, N. P. J., Porse, Bo Torben, Tvardovskiy, A., Jensen, O. N., Olaciregui, N. G., Lavarino, C., Suñol, M., de Torres, C., Mora, J., Carcaboso, A. M. & Helin, K., Apr 2017, In: Nature Medicine. 23, 4, p. 483-492 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Chasing after non-cyanobacterial nitrogen fixation in marine pelagic environments

Moisander, P. H., Benavides, M., Bonnet, S., Berman-Frank, I., White, A. E. & Riemann, Lasse, 8 Sep 2017, In: Frontiers in Microbiology. 8, 8 p., 1736.

Research output: Contribution to journal › Journal article › Research › peer-review

Extinctions, genetic erosion and conservation options for the black rhinoceros (Diceros bicornis)

Moodley, Y., Russo, I. M., Dalton, D. L., Kotzé, A., Muya, S., Haubensak, P., Bálint, B., Munimanda, G. K., Deimel, C., Setzer, A., Dicks, K., Herzig-Straschil, B., Kalthoff, D. C., Siegismund, Hans Redlef, Robovský, J., O'Donoghue, P. & Bruford, M. W., 8 Feb 2017, In: Scientific Reports. 7, 16 p., 41417.

Research output: Contribution to journal › Journal article › Research › peer-review

Evolutionary constraints shape caste-specific gene expression across 15 ant species

Morandin, C., Mikheyev, A. S., Pedersen, Jes Søe & Helanterä, H., May 2017, In: Evolution. 71, 5, p. 1273-1284 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Øle Å-projektet - baggrund og indgrebet

Morsing, J., Sand-Jensen, Kaj, Båstrup-Spohr, Lars, Larsen, Jørgen Bo & Raulund-Rasmussen, Karsten, 2017, In: Natur på Bornholm. 15, p. 36-41 6 p.

Research output: Contribution to journal › Journal article › Communication

Possibilities and challenges for quantitative optical sensing of hydrogen peroxide

Moßhammer, Maria, Kühl, Michael & Koren, K., 11 Oct 2017, In: Chemosensors. 5, 4, 23 p., 28.

Research output: Contribution to journal › Review › Research › peer-review

Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures

Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Mahony, J., Castro Mejia, J. L., Krych, Lukasz, Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J., van Sinderen, D. & Vogensen, Finn Kvist, 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.

Research output: Contribution to journal › Journal article › Research › peer-review

Structure of the competence pilus major pilin ComGC in Streptococcus pneumoniae

Muschiol, S., qrc243, qrc243, Aschtgen, M., Oliveira, V., Schmieder, P., de Lichtenberg, C., Teilum, Kaare, Boesen, T., Akbey, U. & Henriques-Normark, B., 25 Aug 2017, In: Journal of Biological Chemistry. 292, 34, p. 14134-14146 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Warts signaling controls organ and body growth through regulation of ecdysone

Møller, M. E., Nagy, S., Gerlach, S. U., Søgaard, K. C., Danielsen, E. T., Texada, Michael James & Rewitz, Kim, 5 Jun 2017, In: Current Biology. 27, 11, p. 1652-1659 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Litholepas klausreschi gen. et sp. nov., a new neolepadine barnacle (Cirripedia, Thoracica) on a sponge from the Upper Jurassic lithographic limestones of southern Germany

Nagler, C., Haug, J. T., Glenner, Henrik & Buckeridge, J., 1 Jan 2017, In: Neues Jahrbuch fur Geologie und Palaontologie - Abhandlungen. 284, 1, p. 29-42 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A possible 150 million years old cirripede crustacean nauplius and the phenomenon of giant larvae

Nagler, C., Høeg, Jens Thorvald, Haug, C. & Haug, J. T., 2017, In: Contributions to Zoology. 86, 3, p. 213-227 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The bigger, the better? Volume measurements of parasites and hosts: parasitic barnacles (Cirripedia, Rhizocephala) and their decapod hosts

Nagler, C., Hörnig, M. K., Haug, J. T., Noever, C., Høeg, Jens Thorvald & Glenner, H., 5 Jul 2017, In: PLOS ONE. 12, 7, 18 p., e0179958.

Research output: Contribution to journal › Journal article › Research › peer-review

Quantification of fluorescence angiography in a porcine model

Nerup, N., Andersen, H. S., Ambrus, R., Strandby, R. B., Svendsen, M. B. S., Madsen, M. H., Svendsen, Lars Bo & Achiam, Michael Patrick, Jun 2017, In: Langenbecks Archives of Surgery. 402, 4, p. 655-662 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Effects of preference heterogeneity among landowners on spatial conservation prioritization

Nielsen, A. S. E., Strange, Niels, Bruun, Hans Henrik & Jacobsen, Jette Bredahl, Jun 2017, In: Conservation Biology. 31, 3, p. 675–685 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Preference heterogeneity among landowners and spatial conservation prioritization: response to Eyvindson et al. 2017

Nielsen, A. S. E., Strange, Niels, Bruun, Hans Henrik & Jacobsen, Jette Bredahl, 2017, In: Conservation Biology. 31, 6, p. 1491–1493 3 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

Correlations between substrate availability, dissolved CH₄, and CH₄ emissions in an arctic wetland subject to warming and plant removal

Nielsen, C. S., Michelsen, Anders, Strobel, Bjarne W., Wulff, K., Banyasz, I. & Elberling, Bo, 2017, In: Journal of Geophysical Research: Biogeosciences. 122, 3, p. 645-660 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Linking rhizospheric CH₄ oxidation and net CH₄ emissions in an arctic wetland based on ¹³CH₄ labeling of mesocosms

Nielsen, C. S., Michelsen, Anders, Ambus, Per Lennart, Deepagoda, T. K. K. C. & Elberling, Bo, 2017, In: Plant and Soil. 412, 1-2, p. 201–213 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Dating a Greenland shark

Nielsen, J., Feb 2017, In: Natural History. 125, 2, p. 10-13 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Feeding traits of the European flat oyster, Ostrea edulis, and the invasive Pacific oyster, Crassostrea gigas

Nielsen, M., Hansen, B. W. & Vismann, Bent, Jan 2017, In: Marine Biology. 164, 1, 10 p., 6.

Research output: Contribution to journal › Journal article › Research › peer-review

Sphingosine-1-phosphate signaling in inflammatory bowel disease

Nielsen, Ole Haagen, Li, Yuan, Lindbom, B. J. & Coskun, M., Apr 2017, In: Trends in Molecular Medicine. 23, 4, p. 362-374 13 p.

Research output: Contribution to journal › Review › Research › peer-review

Predicting the impact of Lynch syndrome-causing missense mutations from structural calculations

Nielsen, S. V., Stein, Amelie, Dinitzen, A. B., Papaleo, E., Tatham, M. H., Poulsen, E. G., Kassem, M. M., Rasmussen, Lene Juel, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 19 Apr 2017, In: PLoS Genetics. 13, 4, 26 p., e1006739.

Research output: Contribution to journal › Journal article › Research › peer-review

Are herbarium mosses reliable indicators of historical nitrogen deposition?

Nielsen, T. F., Larsen, J. R., Michelsen, Anders & Bruun, Hans Henrik, Dec 2017, In: Environmental Pollution. 231, Part 1, p. 1201-1207 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Mate choice screening in captive solitary carnivores: the role of male behavior and cues on mate preference and paternity in females of a model species, American mink (Neovison vison)

Noer, Christina, Balsby, T. J. S., Anistoroaei, R. M., Stelvig, M. & Dabelsteen, Torben, Nov 2017, In: Zoo Biology. 36, 6, p. 367-381 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

HAI-2 stabilizes, inhibits and regulates SEA-cleavage-dependent secretory transport of matriptase

Nonboe, Annika Weile, Krigslund, O., Søndergård, C., Thomsen, S. S., Friis, S., Andersen, M. N., Ellis, V., Kawaguchi, M., Kataoka, H., Bugge, T. H. & Vogel, Lotte, Jun 2017, In: Traffic. 18, 6, p. 378-391 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The whole-genome landscape of medulloblastoma subtypes

Northcott, P. A., Buchhalter, I., Morrissy, A. S., Hovestadt, V., Weischenfeldt, J., Ehrenberger, T., Gröbner, S., Segura-Wang, M., Zichner, T., Rudneva, V. A., Warnatz, H. J., Sidiropoulos, N., Phillips, A. H., Schumacher, S., Kleinheinz, K., Waszak, S. M., Erkek, S., Jones, D. T. W., Worst, B. C., Kool, M. & 67 others, Zapatka, M., Jäger, N., Chavez, L., Hutter, B., Bieg, M., Paramasivam, N., Heinold, M., Gu, Z., Ishaque, N., Jäger-Schmidt, C., Imbusch, C. D., Jugold, A., Hübschmann, D., Risch, T., Amstislavskiy, V., Gonzalez, F. G. R., Weber, U. D., Wolf, S., Robinson, G. W., Zhou, X., Wu, G., Finkelstein, D., Liu, Y., Cavalli, F. M. G., Luu, B., Ramaswamy, V., Wu, X., Koster, J., Ryzhova, M., Cho, Y. J., Pomeroy, S. L., Herold-Mende, C., Schuhmann, M., Ebinger, M., Liau, L. M., Mora, J., McLendon, R. E., Jabado, N., Kumabe, T., Chuah, E., Ma, Y., Moore, R. A., Mungall, A. J., Mungall, K. L., Thiessen, N., Tse, K., Wong, T., Jones, S. J. M., Witt, O., Milde, T., Von Deimling, A., Capper, D., Korshunov, A., Yaspo, M. L., Kriwacki, R., Gajjar, A., Zhang, J., Beroukhim, R., Fraenkel, E., Korbel, J. O., Brors, B., Schlesner, M., Eils, R., Marra, M. A., Pfister, S. M., Taylor, M. D. & Lichter, P., 19 Jul 2017, In: Nature. 547, 7663, p. 311-317 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

An efficient method for estimating the hydrodynamic radius of disordered protein conformations

Nygaard, M., Kragelund, Birthe Brandt, Papaleo, E. & Lindorff-Larsen, Kresten, 8 Aug 2017, In: Biophysical Journal. 113, 3, p. 550-557 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Structures and short linear motif of disordered transcription factor regions provide clues to the interactome of the cellular hub radical-induced cell death1

O'Shea, Charlotte, Staby, L., Bendsen, S. K., Tidemand, Frederik Grønbæk, Redsted, A., Willemoës, Martin, Kragelund, Birthe Brandt & Skriver, Karen, 13 Jan 2017, In: Journal of Biological Chemistry. 292, 2, p. 512-527 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Marine genomics: news and views

Oliveira Ribeiro, Â. M., Foote, A. D., Kupczok, A., Frazão, B., Limborg, Morten Tønsberg, Piñeiro, R., Abalde, S., Rocha, S. & Rodrigues da Fonseca, Rute Andreia, Feb 2017, In: Marine Genomics. 31, p. 1-8 8 p.

Research output: Contribution to journal › Review › Research › peer-review

Linking neuroethology to the chemical biology of natural products: interactions between cone snails and their fish prey, a case study

Olivera, B. M., Raghuraman, S., Schmidt, E. W. & Safavi, Helena, Oct 2017, In: Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology. 203, 9, p. 717-735 19 p.

Research output: Contribution to journal › Review › Research › peer-review

Behaviour of intrinsically disordered proteins in protein-protein complexes with an emphasis on fuzziness

Olsen, Johan Gotthardt, Teilum, Kaare & Kragelund, Birthe Brandt, Sep 2017, In: Cellular and Molecular Life Sciences. 74, 17, p. 3175-3183 9 p.

Research output: Contribution to journal › Review › Research › peer-review

Draft Genome Sequence of Chilean Antarctic Pseudomonas sp. Strain K2I15

Orellana, P., Pavón, A., Céspedes, S., Salazar, L., Gutiérrez, A., Castillo Bermúdez, D. E. & Corsini, G., 2017, In: Genome Announcements. 5, 33, 2 p., e00771-17.

Research output: Contribution to journal › Journal article › Research › peer-review

Studies on woloszynskioid dinoflagellates VIII: life cycle, resting cyst morphology and phylogeny of Tovellia rinoi sp. nov. (Dinophyceae).

Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 20 Jun 2017, In: Phycologia. 56, 5, p. 533-548 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Historical biome distribution and recent human disturbance shape the diversity of arbuscular mycorrhizal fungi

Partel, M., Öpik, M., Moora, M., Tedersoo, L., Szava-Kovats, R., Rosendahl, Søren, Rillig, M. C., Lekberg, Y., Kreft, H., Helgason, T., Eriksson, O., Davison, J., de Bello, F., Caruso, T. & Zobel, M., Oct 2017, In: New Phytologist. 216, 1, p. 227-238 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Carbon bioavailability in a high arctic fjord influenced by glacial meltwater, NE Greenland

Paulsen, M. L., Nielsen, S. E. B., Müller, O., Møller, E. F., Stedmon, C. A., Juul-Pedersen, T., Markager, S., Sejr, M. K., Delgado Huertas, A., Larsen, A. & Middelboe, Mathias, 2017, In: Frontiers in Marine Science. 4, 19 p., 176.

Research output: Contribution to journal › Journal article › Research › peer-review

Draft Genome Sequence of Bacillus sp. Strain K2I17, Isolated from the Rhizosphere of Deschampsia antarctica Desv.

Pavón, A., Orellana, P., Salazar, L., Céspedes, S., Muiño, L., Gutiérrez, A., Castillo Bermúdez, D. E. & Corsini, G., 2017, In: Genome Announcements. 5, 33, 2 p., e00786-17.

Research output: Contribution to journal › Journal article › Research › peer-review

Diversity of nature's assembly lines - recent discoveries in non-ribosomal peptide synthesis

Payne, J. A. E., Schoppet, M., Hansen, M. H. & Cryle, M. J., 2017, In: Molecular BioSystems. 13, 1, p. 9-22 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The genus Elaphomyces (Ascomycota, Eurotiales): a ribosomal DNA-based phylogeny and revised systematics of European 'deer truffles'

Paz, A., Bellanger, J. -., Lavoise, C., Molia, A., Ławrynowicz, M., Larsson, E., Ibarguren, I. O., Jeppson, M., Læssøe, Thomas, Sauve, M., Richard, F. & Moreau, P. -., Jun 2017, In: Persoonia. 38, p. 197-239 43 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Biodiversity redistribution under climate change: impacts on ecosystems and human well-being

Pecl, G. T., Bastos, M., Bell, J. D., Blanchard, J. L., Bonebrake, T. C., Chen, I-C., Clark, T. D., Colwell, R. K., Danielsen, F., Evengård, B., Falconi, L., Ferrier, S., Frusher, S., Garcia, R. A., Griffis, R. B., Hobday, A. J., Janion-Scheepers, C., Jarzyna, M. A., Jennings, S., Lenoir, J. & 21 others, Linnetved, H. I., Martin, V. Y., McCormack, P. C., McDonald, J., Mitchell, N. J., Mustonen, T., Pandolfi, J. M., Pettorelli, N., Popova, E., Robinson, S. A., Scheffers, B. R., Shaw, J. D., Sorte, C. J. B., Strugnell, J. M., Sunday, J. M., Tuanmu, M. N., Vergés, A., Villanueva, C., Wernberg, T., Wapstra, E. & Williams, S. E., 31 Mar 2017, In: Science. 355, 6332, 9 p., eaai9214.

Research output: Contribution to journal › Review › Research › peer-review

Tumor microenvironment conditions alter Akt and Na⁺/H⁺ exchanger NHE1 expression in endothelial cells more than hypoxia alone: implications for endothelial cell function in cancer

Pedersen, A., Mendes Lopes de Melo, J., Mørup, N., Tritsaris, Katerina & Pedersen, Stine Helene Falsig, 2017, In: BMC Cancer. 17, 15 p., 542.

Research output: Contribution to journal › Journal article › Research › peer-review

The effect of an extreme and prolonged population bottleneck on patterns of deleterious variation: insights from the Greenlandic Inuit

Pedersen, C. T., Lohmueller, K. E., Grarup, Niels, Bjerregaard, P., Hansen, Torben, Siegismund, Hans Redlef, Moltke, Ida & Albrechtsen, Anders, Feb 2017, In: Genetics. 205, 2, p. 787-801 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Seasonal variations in methane fluxes in response to summer warming and leaf litter addition in a subarctic heath ecosystem

Pedersen, Emily Pickering, Elberling, Bo & Michelsen, Anders, 2017, In: Journal of Geophysical Research: Biogeosciences. 122, 8, p. 2137-2153 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Tubulin transport in cilia: how many tubulin cargo-binding sites per IFT particle? (retrospective on DOI 10.1002/bies.201400007)

Pedersen, Lotte Bang, 2017, In: BioEssays. 39, 1, 1 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

Flooding and low oxygen responses in plants

Pedersen, Ole, Perata, P. & Voesenek, L. A. C. J., 8 Nov 2017, In: Functional Plant Biology. 44, 9, p. iii-vi 4 p.

Research output: Contribution to journal › Editorial › Research

Growing under water - how plants cope with low CO₂

Pedersen, Ole, Hinke, A. B., Konnerup, D. & Winkel, A., 2017, In: The Aquatic Gardener. 29, 2, p. 25-33 9 p.

Research output: Contribution to journal › Journal article › Research

The Art of the Planted Aquarium 2017: new concepts and new location

Pedersen, Ole & Floytrup, A., 2017, In: The Aquatic Gardener. 30, 2, p. 35-41 7 p.

Research output: Contribution to journal › Journal article › Communication

Molecular cloning and functional expression of the K⁺ channel K_V7.1 and the regulatory subunit KCNE1 from equine myocardium: [Inkl. corrigendum]

Pedersen, P. J., Thomsen, K. B., Flak, J. B., Tejada, M. D. L. A., Hauser, Frank, Trachsel, D. S., Buhl, Rikke, Kalbfleisch, T., DePriest, M. S., MacLeod, J. N., Callø, Kirstine & Klærke, Dan Arne, Aug 2017, In: Research in Veterinary Science. 113, p. 79-86 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Alternating pH landscapes shape epithelial cancer initiation and progression: focus on pancreatic cancer

Pedersen, Stine Helene Falsig, Novak, Ivana, Alves, F., Schwab, A. & Pardo, L. A., Jun 2017, In: BioEssays. 39, 6, 10 p., 1600253.

Research output: Contribution to journal › Journal article › Research › peer-review

Contrasting oxygen dynamics in Limonium narbonense and Sarcocornia fruticosa during partial and complete submergence

Pellegrini, Elisa, Konnerup, D., Winkel, A., Casolo, V. & Pedersen, Ole, 2017, In: Functional Plant Biology. 44, 9, p. 867-876 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Characterization of RNA editome in primary and metastatic lung adenocarcinomas

Peng, L., Lee, L. J., Xiong, H., Su, H., Rao, J., Xiao, D., He, J., Wu, K. & Liu, D., 14 Feb 2017, In: OncoTarget. 8, 7, p. 11517-11529 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genetic technologies for extremely thermophilic microorganisms of Sulfolobus, the only genetically tractable genus of crenarchaea

Peng, N., Han, W., Li, Y., Liang, Y. & She, Q., 30 Apr 2017, In: Science China Life Sciences. 60, 4, p. 370-385 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

MCT1 and MCT4 expression and lactate flux activity increase during white and brown adipogenesis and impact adipocyte metabolism

Petersen, C., Nielsen, M. D., Andersen, E. S., Basse, A. L., Isidor, Marie Sophie, Markussen, L. K., Viuff, B. M., Lambert, Ian Henry, Hansen, Jacob B. & Pedersen, Stine Helene Falsig, 12 Oct 2017, In: Scientific Reports. 7, 1, 13 p., 13101.

Research output: Contribution to journal › Journal article › Research › peer-review

Trophic cascades of bottom-up and top-down forcing on nutrients and plankton in the Kattegat, evaluated by modelling

Petersen, M. E., Maar, M., Larsen, J., Møller, E. F. & Hansen, Per Juel, May 2017, In: Journal of Marine Systems. 169, p. 25-39 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Precise integration of inducible transcriptional elements (PrIITE) enables absolute control of gene expression

Pinto, R., Hansen, Lars, Hintze, John, Almeida, R., Larsen, S., Coskun, M., Davidsen, J., Mitchelmore, C., David, L., Troelsen, J. T. & Bennett, Eric Paul, 2017, In: Nucleic Acids Research. 45, 13, 15 p., e123.

Research output: Contribution to journal › Journal article › Research › peer-review

Peptide-nucleotide antibiotic Microcin C is a potent inducer of stringent response and persistence in both sensitive and producing cells

Piskunova, J., Maisonneuve, E., Germain-Maisonneuve, E., Gerdes, K. & Severinov, K., May 2017, In: Molecular Microbiology. 104, 3, p. 463-471 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors

Plass, M., Rasmussen, S. H. & Krogh, Anders, 14 Apr 2017, In: PLoS Computational Biology. 13, 4, 26 p., e1005460.

Research output: Contribution to journal › Journal article › Research › peer-review

Endoplasmic reticulum transport of glutathione by Sec61 is regulated by Ero1 and Bip

Ponsero, A. J., Igbaria, A., Darch, M. A., Miled, S., Outten, C. E., Winther, Jakob R., Palais, G., D'Autréaux, B., Delaunay-Moisan, A. & Toledano, M. B., 21 Sep 2017, In: Molecular Cell. 67, 6, p. 962-973.e5 18 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Artificial selection on ant female caste ratio uncovers a link between female-biased sex ratios and infection by Wolbachia endosymbionts

Pontieri, L., Schmidt, A. M., Singh, R., Pedersen, Jes Søe & Linksvayer, T. A., Feb 2017, In: Journal of Evolutionary Biology. 30, 2, p. 225-234 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Determination of the glycogen content in cyanobacteria

Porcellinis, A. D., Frigaard, Niels-Ulrik & Sakuragi, Y., 2017, In: Journal of Visualized Experiments. 125, e56068.

Research output: Contribution to journal › Journal article › Research › peer-review

Carbon isotope fractionation by anoxygenic phototrophic bacteria in euxinic Lake Cadagno

Posth, Nicole Rita Elisabeth, Bristow, L. A., Cox, R. P., Habicht, K. S., Danza, F., Tonolla, M., Frigaard, Niels-Ulrik & Canfield, D. E., Nov 2017, In: Geobiology. 15, 6, p. 798-816 19 p.

Research output: Contribution to journal › Journal article › Research › peer-review

UBL/BAG-domain co-chaperones cause cellular stress upon overexpression through constitutive activation of Hsf1

Poulsen, E. G., Kampmeyer, Caroline, Kriegenburg, F., Johansen, Jens Vilstrup, Hofmann, K., Holmberg, Christian & Hartmann-Petersen, Rasmus, Jan 2017, In: Cell Stress & Chaperones. 22, 1, p. 143-154 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Applying targeted next generation sequencing to dried blood spot specimens from suspicious cases identified by tandem mass spectrometry-based newborn screening

Qian, J., Wang, X., Liu, J., Zhong, J., Le, Y., Tellier, L. C. A. M., Liu, C., Jiang, P., Gao, R. & Wang, Y., Aug 2017, In: Journal of Pediatric Endocrinology and Metabolism. 30, 9, p. 979-988 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Wood ash application increases pH but does not harm the soil mesofauna

Qin, J., Hovmand, Mads Frederik, Ekelund, Flemming, Rønn, Regin, Christensen, Søren, Groot, G. A. D., Mortensen, Louise Hindborg, Skov, Simon & Krogh, P. H., 2017, In: Environmental Pollution. 224, p. 581-589 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Synthesis and biological evaluation of dihydropyrano-[2,3-c]pyrazoles as a new class of PPARγ partial agonists

Qvortrup, K., Jensen, J. F., Sørensen, M. S., Kouskoumvekaki, I., Petersen, R. K., Taboureau, O., Kristiansen, Karsten & Nielsen, T. E., 28 Feb 2017, In: PLoS ONE. 12, 2, 19 p., e0162642.

Research output: Contribution to journal › Journal article › Research › peer-review

Archaic adaptive introgression in TBX15/WARS2

Racimo, Fernando, Gokhman, D., Fumagalli, M., Ko, A., Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, L., Huerta-Sánchez, E. & Nielsen, Rasmus, 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.

Research output: Contribution to journal › Journal article › Research › peer-review

Genome-scale genetic interactions and cell imaging confirm cytokinesis as deleterious to transient topoisomerase II deficiency in Saccharomyces cerevisiae

Ramos-Pérez, C., Ayra-Plasencia, J., Matos-Perdomo, E., Lisby, Michael, Brown, G. W. & Machín, F., Oct 2017, In: G3: Genes, Genomes, Genetics (Bethesda). 7, 10, p. 3379-3391 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A long-term improvement in Danish stream fauna: analyses of temporal dynamics and community alignment of a biotic index

Rasmussen, M. L., Wiberg-Larsen, P. & Jacobsen, Dean, Oct 2017, In: Ecological Indicators. 81, p. 47-53 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Karmitoxin: an amine containing polyhydroxy-polyene toxin from the marine dinoflagellate Karlodinium armiger

Rasmussen, S. A., Binzer, S. B., Hoeck, C., Meier, S., Soman de Medeiros, L., Andersen, N. G., Place, A., Nielsen, K. F., Hansen, Per Juel & Larsen, T. O., 5 Apr 2017, In: Journal of Natural Products. 80, 5, p. 1287−1293 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Human milk oligosaccharide effects on intestinal function and inflammation after preterm birth in pigs

Rasmussen, S. O., Martin, L., Østergaard, M. V., Rudloff, S., Roggenbuck, M., Nguyen, Duc Ninh, Sangild, Per Torp & Bering, S. B., 2017, In: The Journal of Nutritional Biochemistry. 40, p. 141-154 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The fate of ¹³C¹⁵N labelled glycine in permafrost and surface soil at simulated thaw in mesocosms from high arctic and subarctic ecosystems

Ravn, N. M. R., Elberling, Bo & Michelsen, Anders, 2017, In: Plant and Soil. 419, 1-2, p. 201-218 18 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Impact of decade-long warming, nutrient addition and shading on emission and carbon isotopic composition of CO₂ from two subarctic dwarf shrub heaths

Ravn, N. R., Ambus, Per Lennart & Michelsen, Anders, 2017, In: Soil Biology & Biochemistry. 111, p. 15-24 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Prevalence and pathogen load estimates for the fungus Batrachochytrium dendrobatidis are impacted by ITS DNA copy number variation

Rebollar, E. A., Woodhams, D. C., LaBumbard, B., Kielgast, J. & Harris, R. N., 21 Mar 2017, In: Diseases of Aquatic Organisms. 123, 3, p. 213-226 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Sprifermin (rhFGF18) modulates extracellular matrix turnover in cartilage explants ex vivo

Reker, D., Kjelgaard-Petersen, C. F., Siebuhr, A. S., Michaelis, M., Gigout, A., Karsdal, M. A., Ladel, C. & Bay-Jensen, A. C., 12 Dec 2017, In: Journal of Translational Medicine. 15, 12 p., 250.

Research output: Contribution to journal › Journal article › Research › peer-review

Pycnoscelus surinamensis cockroach gut microbiota respond consistently to a fungal diet without mirroring those of fungus-farming termites

Richards, C., Otani, S., Mikaelyan, A. & Poulsen, Michael, 3 Oct 2017, In: PLoS ONE. 12, 10, 19 p., e0185745.

Research output: Contribution to journal › Journal article › Research › peer-review

Hormone-like peptides in the venoms of marine cone snails

Robinson, S. D., Li, Q., Bandyopadhyay, P. K., Gajewiak, J., Yandell, M., Papenfuss, A. T., Purcell, A. W., Norton, R. S. & Safavi, Helena, 1 Apr 2017, In: General and Comparative Endocrinology. 244, p. 11-18 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Oral Lactobacillus Counts Predict Weight Gain Susceptibility: A 6-Year Follow-Up Study

Rosing, J. A., Walker, K. C., Jensen, Benjamin Anderschou Holbech & Heitmann, Berit, Oct 2017, In: Obesity Facts. 10, 5, p. 473-482 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genetic screening of the FLCN gene identify six novel variants and a Danish founder mutation

Rossing, M., Albrechtsen, Anders, Skytte, A., Jensen, U. B., Ousager, L. B., Gerdes, Anne-Marie Axø, Nielsen, Finn Cilius & Hansen, T. V. O., 2017, In: Journal of Human Genetics. 62, p. 151-157 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ecosystem nitrogen fixation throughout the snow-free period in subarctic tundra: effects of willow and birch litter addition and warming

Rousk, Kathrin & Michelsen, Anders, Apr 2017, In: Global Change Biology. 23, 4, p. 1552-1563 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Molybdenum and phosphorus limitation of moss-associated nitrogen fixation in boreal ecosystems

Rousk, Kathrin, Degboe, J., Michelsen, Anders, Bradley, R. & Bellenger, J., 2017, In: New Phytologist. 214, 1, p. 97-107 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Nitrogen fixation in the High Arctic: a source of ‘new’ nitrogen?

Rousk, Kathrin, Sørensen, P. L. & Michelsen, Anders, 2017, In: Biogeochemistry. 136, 2, p. 213-222 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The interactive effects of temperature and moisture on nitrogen fixation in two temperate-arctic mosses

Rousk, Kathrin, Pedersen, P. A., Dyrnum, K. & Michelsen, Anders, 2017, In: Theoretical and Experimental Plant Physiology. 29, 1, p. 25-36 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Antagonism correlates with metabolic similarity in diverse bacteria

Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 3 Oct 2017, In: Proceedings of the National Academy of Science of the United States of America. 114, 40, p. 10684-10688 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Evolutionary transition towards permanent chloroplasts? - Division of kleptochloroplasts in starved cells of two species of Dinophysis (Dinophyceae).

Rusterholz, P. M., Hansen, Per Juel & Daugbjerg, Niels, 11 May 2017, In: PLoS ONE. 12, 5, 16 p., e0177512.

Research output: Contribution to journal › Journal article › Research › peer-review

Cold denaturation of the HIV-1 protease monomer

Rösner, Heike Ilona, Caldarini, M., Prestel, Andreas, Vanoni, M. A., Broglia, R. A., Aliverti, A., Tiana, G. & Kragelund, Birthe Brandt, 7 Feb 2017, In: Biochemistry. 56, 8, p. 1029-1032 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Comparative assessment of Vibrio virulence in marine fish larvae

Rønneseth, A., Castillo Bermúdez, D. E., D'Alvise, P., Tønnesen, Ø., Haugland, G., Grotkjær, T., Engell-Sørensen, K., Nørremark, L., Bergh, Ø., Wergeland, H. I. & Gram, L., Oct 2017, In: Journal of Fish Diseases. 40, 10, p. 1373-1385 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Climate change and human colonization triggered habitat loss and fragmentation in Madagascar

Salmona, J., Heller, Rasmus, Quéméré, E. & Chikhi, L., Oct 2017, In: Molecular Ecology. 26, 19, p. 5203-5222 20 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Autophagy is required for gamete differentiation in the moss Physcomitrella patens

Sanchez-Vera, V., Kenchappa, C. S., Landberg, K., Bressendorff, Simon, Schwarzbach, S., Martin, T., Mundy, J., Petersen, Morten, Thelander, M. & Sundberg, E., 2017, In: Autophagy. 13, 11, p. 1939-1951 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Decade-long time delays in nutrient and plant species dynamics during eutrophication and re-oligotrophication of Lake Fure 1900–2015

Sand-Jensen, Kaj, Bruun, Hans Henrik & Båstrup-Spohr, Lars, May 2017, In: Journal of Ecology. 105, 3, p. 690-700 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Filsø - artsrigdommen stiger fortsat

Sand-Jensen, Kaj, Kragh, T., Båstrup-Spohr, Lars, Holm, P., Kristensen, E., Rye Larsen, J., Schou, J. C., Aaby, B. & Moeslund, B., 2017, In: URT. 4, p. 22-27 6 p.

Research output: Contribution to journal › Journal article › Research

Nye danske søer - design af optimal miljøtilstand og biodiversitet

Sand-Jensen, Kaj, Kragh, T., Borum, Jens, Båstrup-Spohr, Lars, Egemose, S., Jensen, H. S., Jeppesen, E., Reitzel, K. & Søndergaard, M., 2017, In: Vand & Jord. 24, 2, p. 65-69 5 p.

Research output: Contribution to journal › Journal article › Communication

The complete mitochondrial genome of the long-lived Greenland shark (Somniosus microcephalus): characterization and phylogenetic position

Santaquiteria, A., Nielsen, J., Klemetsen, T., Willassen, N. P. & Præbel, K., Sep 2017, In: Conservation Genetics Resources. 9, 3, p. 351-355 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Soil DNA extraction procedure influences protist 18S rRNA gene community profiling outcome

Santos, S. S., Nunes, I. M., Nielsen, Tue Kjærgaard, Jacquiod, S. J. A., Hansen, L. H. & Winding, A., Jul 2017, In: Protist. 168, 3, p. 283-293 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ancient genomic changes associated with domestication of the horse

Sanz, P. L., Gamba, C., Gaunitz, C., Der Sarkissian, C., Pruvost, M., Albrechtsen, A., Fages, A. A., Khan, N., Schubert, M., Jagannathan, V., Serres-Armero, A., Kuderna, L. F. K., Povolotskaya, I. S., Seguin-Orlando, A., Lepetz, S., Neuditschko, M., Thèves, C., Alquraishi, S., Alfarhan, A. H., AL-Rasheid, K. & 13 others, Rieder, S., Samashev, Z., Francfort, H., Benecke, N., Hofreiter, M., Ludwig, A., Keyser, C., Marques-Bonet, T., Ludes, B., Crubézy, E., Leeb, T., Willerslev, Eske & Orlando, L. A. A., 28 Apr 2017, In: Science. 356, 6336, p. 442-445 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Community recommendations on terminology and procedures used in flooding and low oxygen stress research

Sasidharan, R., Bailey-Serres, J., Ashikari, M., Atwell, B. J., Colmer, T. D., Fagerstedt, K., Fukao, T., Geigenberger, P., Hebelstrup, K. H., Hill, R. D., Holdsworth, M. J., Ismail, A. M., Licausi, F., Mustroph, A., Nakazono, M., Pedersen, O., Perata, P., Sauter, M., Shih, M., Sorrell, B. K. & 6 others, Striker, G. G., Van Dongen, J. T., Whelan, J., Xiao, S., Visser, E. J. W. & Voesenek, L. A. C. J., 2017, In: New Phytologist. 214, 4, p. 1403-1407 5 p.

Research output: Contribution to journal › Letter › Research › peer-review

High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111

Schmid, N., Suppiger, A., Steiner, E., Pessi, G., Kaever, V., Fazli, M., Tolker-Nielsen, Tim, Jenal, U. & Eberl, L., 1 May 2017, In: Microbiology. 163, 5, p. 754-764 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

To bier nye for den danske fauna (Hymenoptera, Apoidea): Two bee species new to Denmark (Hymenoptera, Apoidea)

Schmidt, H. T., Calabuig, Isabel & Madsen, Henning Bang, 2017, In: Entomologiske Meddelelser. 85, 1-2, p. 41-46 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Interaction webs in arctic ecosystems: determinants of arctic change?

Schmidt, N. M., Hardwick, B., Gilg, O., Høye, T. T., Krogh, P. H., Meltofte, H., Michelsen, Anders, Mosbacher, J. B., Raundrup, K., Reneerkens, J., Stewart, L., Wirta, H. & Roslin, T., 2017, In: Ambio. 46, Suppl. 1, p. 12-25 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Leaf anatomy, BVOC emission and CO₂ exchange of arctic plants following snow addition and summer warming

Schollert, M., Kivimäenpää, M., Michelsen, Anders, Blok, D. & Rinnan, Riikka, 2017, In: Annals of Botany. 119, 3, p. 433-445 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

KIF13B establishes a CAV1-enriched microdomain at the ciliary transition zone to promote Sonic hedgehog signalling.

Schou, K. B., Mogensen, J. B., Morthorst, Stine Kjær, Nielsen, B. S., Aleliunaite, A., Serra-Marques, A., Fürstenberg, N., Saunier, S., Bizet, A. A., Veland, I. R., Akhmanova, A., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 30 Jan 2017, In: Nature Communications. 8, 15 p., 14177.

Research output: Contribution to journal › Journal article › Research › peer-review

Accelerated evolution of developmentally biased genes in the tetraphenic ant Cardiocondyla obscurior

Schrader, Lukas, Helanterä, H. & Oettler, J., Mar 2017, In: Molecular Biology and Evolution. 34, 3, p. 535-544 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Molecular substitution rate increases with latitude in butterflies: evidence for a trans-glacial latitudinal layering of populations?

Schär, S., Vila, R., Petrović, A., Tomanović, Ž., Pierce, N. E. & Nash, David Richard, 2017, In: Ecography. 40, 8, p. 930-935 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., DeMaere, M. Z. & 47 others, Chikhi, R., Nagarajan, N., Quince, C., Meyer, F., Balvociute, M., Hansen, L. H., Sørensen, Søren Johannes, Chia, B. K. H., Denis, B., Froula, J. L., Wang, Z., Egan, R., Kang, D. D., Cook, J. J., Deltel, C., Beckstette, M., Lemaitre, C., Peterlongo, P., Rizk, G., Lavenier, D., Wu, Y., Singer, S. W., Jain, C., Strous, M., Klingenberg, H., Meinicke, P., Barton, M. D., Lingner, T., Lin, H., Liao, Y., Silva, G. G. Z., Cuevas, D. A., Edwards, R. A., Saha, S., Piro, V. C., Renard, B. Y., Pop, M., Klenk, H., Göker, M., Kyrpides, N. C., Woyke, T., Vorholt, J. A., Schulze-Lefert, P., Rubin, E. M., Darling, A. E., Rattei, T. & McHardy, A. C., 2017, In: Nature Methods. 14, 11, p. 1063-1071 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Esc2 promotes Mus81 complex-activity via its SUMO-like and DNA binding domains

Sebesta, M., Urulangodi, M., Stefanovie, B., Szakal, B., Pacesa, M., Lisby, Michael, Branzei, D. & Krejci, L., Jan 2017, In: Nucleic Acids Research. 45, 1, p. 215-230 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features

Seki, R., Li, C., Fang, Q., Hayashi, S., Egawa, S., Hu, J., Xu, L., Pan, H., Kondo, M., Sato, T., Matsubara, H., Kamiyama, N., Kitajima, K., Saito, D., Liu, Y., Gilbert, T., Zhou, Q., Xu, X-Z., Shiroishi, T., Irie, N. & 2 others, Tamura, K. & KU, thw266, 6 Feb 2017, In: Nature Communications. 8, 14 p., 14229.

Research output: Contribution to journal › Journal article › Research › peer-review

Determination of protein turnover in E. coli cells during exit from persistence

Semanjski, M., Germain-Maisonneuve, E., Gerdes, K. & Macek, B., 2017, In: F A S E B Journal. 31, S1, 1 p., 915.2.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

Archaea and CRISPR biology

She, Q. & Han, W., 17 Aug 2017, In: Microbiology Today. 44, 3, p. 122-125 4 p.

Research output: Contribution to journal › Journal article › Communication

The angular position of a refuge affects escape responses in staghorn sculpin Leptocottus armatus

Shi, X., Møller, J. S., Højgaard, J., Johansen, J. L., Steffensen, John Fleng, Liu, D. & Domenici, P., Jun 2017, In: Journal of Fish Biology. 90, 6, p. 2434-2442 9 p.

Research output: Contribution to journal › Letter › Research › peer-review

Isolation and phylogenetic study of Rift Valley fever virus from the first imported case to China

Shi, Y., Zheng, K., Li, X., Li, L., Li, S., Ma, J., Dai, J., Ji, J., Yuan, S., Lu, H., Li, J., Sun, F., Xu, X. & Huang, J., Jun 2017, In: Virologica Sinica. 32, 3, p. 253-256 4 p.

Research output: Contribution to journal › Letter › Research › peer-review

Basin scale variability of active diazotrophs and nitrogen fixation in the North Pacific, from the tropics to the subarctic Bering Sea

Shiozaki, T., Bombar, D., Riemann, Lasse, Hashihama, F., Takeda, S., Yamaguchi, T., Ehama, M., Hamasaki, K. & Furuya, K., Jun 2017, In: Global Biogeochemical Cycles. 31, 6, p. 996-1009 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

Sikora, M., Seguin-Orlando, A., Sousa, V. C., Albrechtsen, A., Korneliussen, T. S., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, P. R., Bosch, M. D., Renaud, G., Allentoft, M. E., Margaryan, A., Vasilyev, S. V., Veselovskaya, E. V., Borutskaya, S. B., Deviese, T., Comeskey, D., Higham, T., Manica, A. & 7 others, Foley, R., Meltzer, D. J., Nielsen, Rasmus, Excoffler, L., Lahr, M. M., Orlando, L. A. A. & Willerslev, Eske, 3 Nov 2017, In: Science. 358, 6363, p. 659-662 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

In silico evolution of lysis-lysogeny strategies reproduces observed lysogeny propensities in temperate bacteriophages

Sinha, V., Goyal, A., Svenningsen, Sine Lo, Semsey, S. & Krishna, S., 26 Jul 2017, In: Frontiers in Microbiology. 8, 11 p., 1386.

Research output: Contribution to journal › Journal article › Research › peer-review

Characterization of ATP7A missense mutants suggests a correlation between intracellular trafficking and severity of Menkes disease

Skjørringe, T., Pedersen, Per Amstrup, Thorborg, S. S., Nissen, P., Gourdon, Pontus Emanuel & Møller, L. B., 7 Apr 2017, In: Scientific Reports. 7, 18 p., 757.

Research output: Contribution to journal › Journal article › Research › peer-review

Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Skov, L., Schierup, M. H., Danish Pan Genome Consortium, D. P. G. C., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Rasmussen, Simon, Kristiansen, Karsten & Brunak, Søren, 2017, In: PLOS Genetics. 13, 8, p. e1006834

Research output: Contribution to journal › Journal article › Research › peer-review

Modeling the temperature-and age-dependent survival, development, and oviposition rates of stable flies (Stomoxys calcitrans) (Diptera: Muscidae)

Skovgard, H. & Nachman, Gøsta Støger, Oct 2017, In: Environmental Entomology. 46, 5, p. 1130-1142 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Founder effect of the RET^C611Y mutation in multiple endocrine neoplasia 2A in Denmark: a nationwide Study

Sloth Mathiesen, J., Kroustrup, J. P., Vestergaard, P., Krag, K. S., Poulsen, P. L., Rasmussen, Å. K., Feldt-Rasmussen, Ulla, Gaustadnes, M., Ørntoft, T. F., Rossing, M., Nielsen, Finn Cilius, Albrechtsen, Anders, Brixen, K., Godballe, C. & Frederiksen, A. L., Dec 2017, In: Thyroid. 27, 12, p. 1505-1510 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The Pathogenic A2V Mutant Exhibits Distinct Aggregation Kinetics, Metal Site Structure, and Metal Exchange of the Cu²⁺-Aβ Complex

Somavarapu, A. K., Shen, F., Teilum, Kaare, Zhang, J., Mossin, S., Thulstrup, Peter Waaben, Bjerrum, Morten Jannik, Tiwari, M. K., Szunyogh, D., Søtofte, P. M., Kepp, K. P. & Hemmingsen, Lars Bo Stegeager, 2017, In: Chemistry - A European Journal. 23, 55, p. 13591-13595 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Obesity is associated with depot-specific alterations in adipocyte DNA methylation and gene expression

Sonne, Si Brask, Yadav, R., Yin, G., Dalgaard, M. D., Myrmel, L. S., Gupta, R., Wang, J., Madsen, L., Kajimura, S. & Kristiansen, Karsten, 2017, In: Adipocyte. 6, 2, p. 124-133 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis

Sonnenschein, E. C., Nielsen, K. F., D'Alvise, P., Porsby, C. H., Melchiorsen, J., Heilmann, J., Kalatzis, Panagiotis, López-Pérez, M., Bunk, B., Spröer, C., Middelboe, Mathias & Gram, L., 2017, In: The ISME Journal. 11, p. 569-583 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Below-ground biological responses to pyrogenic organic matter and litter inputs in grasslands

Soong, J. L., Dam, M., Wall, D. H. & Cotrufo, M. F., Jan 2017, In: Functional Ecology. 31, 1, p. 260-269 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Acute infection with the intestinal parasite Trichuris muris has long-term consequences on mucosal mast cell homeostasis and epithelial integrity

Sorobetea, D., Holm, J. B., Henningsson, H., Kristiansen, Karsten & Svensson-Frej, M., Feb 2017, In: European Journal of Immunology. 47, 2, p. 257-268 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Eukaryotic transcription factors: paradigms of protein intrinsic disorder

Staby, L., O'Shea, Charlotte, Willemoës, Martin, Theisen, F., Kragelund, Birthe Brandt & Skriver, Karen, 12 Jul 2017, In: Biochemical Journal. 474, 15, p. 2509-2532 24 p.

Research output: Contribution to journal › Review › Research › peer-review

How to make sense of team sport data: from acquisition to data modeling and research aspects

Stein, M., Janetzko, H., Seebacher, D., Jäger, A., Nagel, M., Hölsch, J., Kosub, S., Schreck, T., Keim, D. A. & Grossniklaus, M., Jan 2017, In: Data. 2, 1, 23 p., 2.

Research output: Contribution to journal › Journal article › Research › peer-review

Class I Cytokine Receptors: Towards the Inside

Steinocher, H., Bugge, K. Ø., Nikolajsen, L. F., Lindorff-Larsen, Kresten, Brooks, A. & Kragelund, Birthe Brandt, 2017, In: Biophysical Society. Annual Meeting. Abstracts. 112, 3. Suppl. 1, p. 171A 1 p., 845-Plat.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review