Department of Biology

 

 
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  1. 2024
  2. Published

    AI Implementation and Capability Development in Manufacturing: An Action Research Case

    Eklöf, Jon, Snis, U. L., Hamelryck, Thomas Wim, Grima, A. & Rønning, Ola, 2024, Proceedings of the 57th Hawaii International Conference on System Sciences - HICSS 2024. Hawaii International Conference on System Sciences, 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  3. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  4. Published

    Endogenous Tagging of Ciliary Genes in Human RPE1 Cells for Live-Cell Imaging

    Kuhns, S., Juhl, A. D., Anvarian, Zeinab, Wüstner, D., Pedersen, Lotte Bang & Andersen, J. S., 2024, Methods in Molecular Biology. Humana Press, p. 147-166 20 p. (Methods in Molecular Biology, Vol. 2725).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  5. Published

    Investigations on Microbes Attached to the Cuticle of Phytonematodes

    Topalovic, Olivera, Radaković, Z. S., Elhady, A., Bredenbruch, S. & Heuer, H., 2024, Plant-Nematode Interactions. Molinari, S. (ed.). Vol. 2756. p. 257-270 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  6. 2023
  7. Published

    Cilia and flagella

    Pedersen, Lotte Bang, Jurisch-Yaksi, N., Schmid, F. M. & Christensen, Søren Tvorup, 2023, Encyclopedia of Cell Biology, Second Edition. Bradshaw, R. A., Hart, G. W. & Stahl, P. D. (eds.). 2 ed. Oxford: Elsevier, Vol. 3. p. 164-188 25 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Estuarine Seagrasses

    Gruber, R. K., Gurbisz, C., Borum, Jens & Kemp, W. M., 2023, Estuarine Ecology. Crump, B. C., Testa, J. M. & Dunton, K. H. (eds.). 3 ed. John/Wiley & Sons, Inc. John/Wiley & Sons Ltd., 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  9. Published

    Evolution of Bilateria from a Meiofauna Perspective—Miniaturization in the Focus

    Worsaae, Katrine, Vinther, J. & Sørensen, Martin Vinther, 2023, New Horizons in Meiobenthos Research: Profiles, Patterns and Potentials. 1 ed. Springer, Cham, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  10. Published

    Impact of Microbial Symbionts on Fungus-Farming Termites and Their Derived Ecosystem Functions

    Murphy, Rob, Sinotte, Veronica Marie, Schmidt, Suzanne, Li, Guangshuo, Hamilton Renalias, J., Koné, N. A. & Poulsen, Michael, 2023, Assessing the Microbiological Health of Ecosystems. Hurst, C. J. (ed.). Wiley, p. 185-203

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  11. Published

    The Biology and Life Cycle of Enigmatic Crustacean Y-Larvae: A Review

    Dreyer, N., Olesen, Jørgen, Grygier, M. J., Eibye-Jacobsen, Danny, Høeg, Jens Thorvald, Kerbl, A., Fujita, Y., Kolbasov, G. A., Savchenko, A. S., Worsaae, Katrine, Palero, F. & Chan, B. K. K., 2023, Oceanography and Marine Biology: An Annual Review, Volume 61. Hawkins, S. J., Todd, P. A. & Russell, B. D. (eds.). CRC Press, p. 81-126 46 p. (Oceanography and Marine Biology, Vol. 61).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  12. 2022
  13. Published

    Bioinformatics of transcription factor binding prediction

    Navarro-Delgado, E. I., Salgado-Albarrán, M., Torres-Arciga, K., Alcaraz, N., Soto-Reyes, E., Herrera, L. A. & González-Barrios, R., 2022, Bioinformatics and Human Genomics Research. CRC Press, p. 203-221 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  14. Published

    Foreword

    Gawne, R. & Boomsma, Jacobus J., 2022, The Individual in the Animal Kingdom. MIT Press, 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  15. Published

    How Reciprocal Interactions Between the Tumor Microenvironment and Ion Transport Proteins Drive Cancer Progression

    Elingaard-Larsen, L. O., Rolver, M. G., Sørensen, E. E. & Pedersen, Stine Helene Falsig, 2022, From Malignant Transformation to Metastasis: Ion Transport in Tumor Biology. Stock, C. & Pardo, L. A. (eds.). Springer, p. 1-38 38 p. (Reviews of Physiology, Biochemistry and Pharmacology, Vol. 182).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  16. Published

    Lifetime Commitment between Social Insect Families and Their Fungal Cultivars Complicates Comparisons with Human Farming

    Boomsma, Jacobus J., 2022, The Convergent Evolution of Agriculture in Humans and Insects. Schultz, T. R., Gawne, R. & Peregrine, P. N. (eds.). MIT Press, 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  17. Published

    Mixture Models for Spherical Data with Applications to Protein Bioinformatics

    Mardia, K. V., Barber, S., Burdett, P. M., Kent, J. T. & Hamelryck, Thomas Wim, 2022, Directional Statistics for Innovative Applications: A Bicentennial Tribute to Florence Nightingale. Springer, p. 15-32 (Forum for Interdisciplinary Mathematics).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    Nutrition of Corals and Their Trophic Plasticity under Future Environmental Conditions

    Dellisanti, Walter, Seveso, D. & Fang, J. K., 2022, Corals - Habitat Formers From the Shallow to the Deep. InTechOpen

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  19. Published

    Persistent Topology of Protein Space

    Hamilton, W., Borgert, J. E., Hamelryck, Thomas Wim & Marron, J. S., 2022, Research in Computational Topology 2. Springer, p. 223-244 (Association for Women in Mathematics Series, Vol. 30).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  20. Published

    Sigalionidae, Pisioninae Ehlers, 1901

    Gonzalez, B. C., Worsaae, Katrine & Eibye-Jacobsen, Danny, 2022, Pleistoannelida, Errantia II. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, p. 139-151 13 p. (Handbook of Zoology, Vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  21. 2021
  22. Published

    Antibiotic Tolerance and Persistence Studied Throughout Bacterial Growth Phases

    Maffei, E., Fino, C. & Harms, A., 2021, Bacterial Persistence: Methods and Protocols. Verstraeten, N. & Michiels, J. (eds.). 2. ed. ed. Humana Press, p. 23-40 18 p. (Methods in Molecular Biology, Vol. 2357).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Break-up of lake ice in the Arctic: strong linkage to mean summer temperature

    Christoffersen, Kirsten Seestern, Raundrup, K. & Lauridsen, T. L., 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. R., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE - Danish Centre for Environment and Energy, p. 14-15

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  24. Published

    DNA Double-Strand Break-Induced Gene Amplification in Yeast

    Strucko, T., Lisby, Michael & Mortensen, U. H., 2021, Homologous Recombination: Methods and Protocols. Aguilera, A. & Carreira, A. (eds.). Humana Press, p. 239-252 14 p. (Methods in Molecular Biology, Vol. 2153).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  25. Published

    Development and validation of new methods for measuring predation rates in mixoplanktonic protists

    Ferreira, G. D., Calbet, A., Mansour, J. S., Not, F., Medic, Nikola, Hansen, Per Juel, Romano, F., Pitta, P., Flynn, K. J. & Mitra, A., 2021, Novel Approaches For Investigating Marine Planktonic Mixotrophy. Mitra, A., Flynn, K. J., Anestis, K., Mansour, J. S., Ferreira, G. D. & Calbet, A. (eds.). Zenodo, 69 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  26. Published

    Ecology of Arctic Lakes and Ponds

    Jeppesen, E., Christoffersen, Kirsten Seestern, Rautio, M. & Lauridsen, T. L., 2021, Arctic Ecology. Thomas, D. N. (ed.). Wiley-Blackwell, p. 159-180 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  27. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  28. Published

    Errantia incertae sedis: Nerillidae Levinsen, 1883

    Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 215-228 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  29. Published

    Fjords and climate change

    Juul-Pedersen, T., Winding, M. H. S., Sejr, M. K. & Hansen, Per Juel, 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. B., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE – Danish Centre for Environment and Energy, p. 8-9 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  30. Published

    Frustule Photonics and Light Harvesting Strategies in Diatoms

    Goessling, J. W., Su, Y., Kühl, Michael & Ellegaard, Marianne, 2021, Diatom Morphogenesis. Wiley, p. 269-300 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  31. Published

    GEM MarineBasis – Programme description

    Sejr, M. K., Winding, M. H. S., Juul-Pedersen, T., Hansen, Per Juel & Nielsen, T. G., 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. R., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE – Danish Centre for Environment and Energy, p. 40-41 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  32. Published

    HABs under global change: Experimental conditions and approaches

    van der Waal, D. B., Bach, L., Berdalet, E., Brandenburg, K. M., Suikkanen, S., Wohlrab, S., Hansen, Per Juel & Kremp, A., 2021, Guidelines for the study of climate change effects on HABs. Enevoldsen, H. & Sun, Y. (eds.). Unesco, p. 36-63 (IOC Manual and Guides, Vol. 88).

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research › peer-review

  33. Published

    Imprimer La Lumiere – 3D Printing Bioluminescence for Architectural Materiality

    Thomsen, M. R., Tamke, M., Mosse, A., Sieder-semlitsch, J., Bradshaw, H., Buchwald, E. F. & Moßhammer, Maria, 2021, Proceedings of the 2021 DigitalFUTURES: The 3rd International Conference on Computational Design and Robotic Fabrication (CDRF 2021). Yuan, P. F., Chai, H., Yan, C. & Leach, N. (eds.). Springer Singapore, p. 305-315 11 p. Chapter 28

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  34. Published

    Physiological traits of the Greenland shark Somniosus microcephalus obtained during the TUNU-Expeditions to Northeast Greenland

    Di Prisco, G., Ademollo, N., Ancora, S., Christiansen, J. S., Coppola, D., Corsolini, S., Ferrando, S., Ghigliotti, L., Giordano, D., Lynghammar, A., Nielsen, J., Pisano, E., Russo, R., Steffensen, John Fleng & Verde, C., 2021, Life in Extreme Environments: Insights in Biological Capability. Di Prisco, G., Edwards, H. G. M., Elster, J. & Huiskes, A. H. L. (eds.). Cambridge University Press, p. 11-41 (Ecological Reviews).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  35. Published

    Protodrilidae Hatschek, 1888

    Martínez, A., Purschke, G. & Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 299-337 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  36. Published

    Protodriloididae Purschke & Jouin, 1988

    Martínez, A., Worsaae, Katrine & Purschke, G., 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 338-353 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    Recombinant production of membrane proteins in yeast

    Preisler, Sarah Spruce, Hansen, K. M., Nurup, C. N., Beich-Frandsen, M. & Pedersen, Per Amstrup, 2021, Methods in Enzymology. Pyle, A. M. & Christianson, D. W. (eds.). Academic Press, Vol. 660. p. 21-52 32 p. (Methods in Enzymology, Vol. 660).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  38. Published

    Saccocirridae Czerniavsky, 1881

    Di Domenico, M., Worsaae, Katrine & Purschke, G., 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 280-298 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  39. Published

    Sedentaria incertae sedis: Diurodrilidae Kristensen & Niilonen, 1982

    Worsaae, Katrine & Kristensen, Reinhardt Møbjerg, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 202-214 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  40. Published

    The Natural Environment and Its Biodiversity in Greenland During the Present Climate Change

    Johnsen, I. & Heide-Jørgensen, H., 2021, Biogeography in the Sub-Arctic: The Past and Future of North Atlantic Biota. Panagiotakopulu, E. & Sadler, J. P. (eds.). Wiley, p. 339-358 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  41. Published

    Time-efficient Bayesian Inference for a (Skewed) von Mises Distribution on the Torus in a Deep Probabilistic Programming Language

    Rønning, Ola, Ley, C., Mardia, K. V. & Hamelryck, Thomas Wim, 2021, 2021 IEEE International Conference on Multisensor Fusion and Integration for Intelligent Systems (MFI). IEEE, p. 1-8

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  42. 2020
  43. Published

    Bayesian protein superposition using Hamiltonian Monte Carlo

    Sanz Moreta, Lys, Al-Sibahi, A. S. & Hamelryck, Thomas Wim, Oct 2020, Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020. IEEE, p. 1-11 9288019

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  44. Published

    Analysis of caveolin in primary cilia

    Morthorst, Stine Kjær, Mogensen, J. B., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 2020, Caveolae: Methods and Protocols. Blouin, C. M. (ed.). Humana Press, p. 27-41 (Methods in Molecular Biology, Vol. 2169).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  45. Published

    Annelida (excluding Clitellata and Oligochaeta)

    Worsaae, Katrine, 2020, Guide to the Identification of Marine Meiofauna. Schmidt-Rhaesa, A. (ed.). Verlag Dr. Friedrich Pfeil, p. 239-270

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  46. Published

    Archaeal Viruses and Their Interactions with CRISPR-Cas Systems

    Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. Published

    Bier

    Madsen, Henning Bang, 2020, Den danske Rødliste. Moeslund, J. E. (ed.). Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research › peer-review

  48. Published

    Circle-Seq: Isolation and Sequencing of Chromosome-Derived Circular DNA Elements in Cells

    Møller, H. D., 2020, DNA Electrophoresis: Methods and Protocols. Hanada, K. (ed.). Humana Press, p. 165-181 17 p. (Methods in Molecular Biology, Vol. 2119).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  49. Published

    Classifying disease-associated variants using measures of protein activity and stability

    Jepsen, M. M., Fowler, D. M., Hartmann-Petersen, Rasmus, Stein, Amelie & Lindorff-Larsen, Kresten, 2020, Protein Homeostasis Diseases: Mechanisms and Novel Therapies. Pey, A. L. (ed.). Elsevier, p. 91-107

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  50. Published

    Computing, Analyzing, and Comparing the Radius of Gyration and Hydrodynamic Radius in Conformational Ensembles of Intrinsically Disordered Proteins

    Ahmed, M. C., Crehuet, R. & Lindorff-Larsen, Kresten, 2020, Intrinsically Disordered Proteins: Methods and Protocols. Kragelund, B. B. & Skriver, K. (eds.). Humana Press, p. 429-445 17 p. (Methods in Molecular Biology, Vol. 2141).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  51. Published

    De Novo Pathway Enrichment with KeyPathwayMiner

    Alcaraz, N., Hartebrodt, A. & List, M., 2020, Protein-Protein Interaction Networks: Methods and Protocols. Canzar, S. & Ringeling, F. R. (eds.). Humana Press, p. 181-199 19 p. (Methods in Molecular Biology, Vol. 2074).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  52. Published

    De Novo Pathway-Based Classification of Breast Cancer Subtypes

    List, M., Alcaraz, N. & Batra, R., 2020, Protein-Protein Interaction Networks: Methods and Protocols. Canzar, S. & Ringeling, F. R. (eds.). Humana Press, p. 201-213 13 p. (Methods in Molecular Biology, Vol. 2074).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  53. Published

    Enteropneusta

    Kaul-Strehlow, S. & Worsaae, Katrine, 2020, Guide to the Identification of Marine Meiofauna. Schmidt-Rhaesa, A. (ed.). Verlag Dr. Friedrich Pfeil, p. 585-587

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  54. Published

    Fundamentals of Bicarbonate Secretion in Epithelia

    Novak, Ivana & Praetorius, J., 2020, Basic Epithelial Ion TransportPrinciples and Function: Ion Channels and Transporters of Epitheliain Health and Disease. Hamilton, K. L. & Devor, D. C. (eds.). 2. ed. Springer, Vol. 1. p. 461-541 (Physiology in Health and Disease).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  55. Published

    Grasslands of Northern Europe and the Baltic States

    Dengler, J., Birge, T., Bruun, Hans Henrik, Rašomavicius, V., Rusina, S. & Sickel, H., 2020, Encyclopedia of the World's Biomes: Forests - Trees of Life. DellaSala, D. A. & DiPaolo, D. A. (eds.). Elsevier, Vol. 3. p. 689-702 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

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