Department of Biology

 

 
  1. 2023
  2. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, K. T. & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contributionNet publication - Internet publicationCommunication

  3. Published

    The lichen genera Gondwania and Transdrakea gen. nov. (Teloschistaceae) - speciation in three southern continents

    Søchting, Ulrik, Sancho, L. G. & Arup, U., 2023, In: Plant and Fungal Systematics. 68, 2, p. 304-319 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Synergistic effects of agonists and two-pore-domain potassium channels on secretory responses of human pancreatic duct cells Capan-1

    Sørensen, Christiane Elisabeth, Trauzold, A., Christensen, Nynne, Tawfik, D., Szczepanowski, M. & Novak, Ivana, 2023, In: Pflügers Archiv - European Journal of Physiology. 475, 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Living on the edge – first survey of loriciferans along the Atacama Trench

    Sørensen, Martin Vinther, Herranz, Maria, Grzelak, K., Shimabukuro, M., Kristensen, Reinhardt Møbjerg & Zeppilli, D., 2023, In: European Journal of Taxonomy. 879, p. 162-187

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Every refuge has its price: Ostreobium as a model for understanding how algae can live in rock and stay in business

    Tandon, K., Pasella, M. M., Iha, C., Ricci, F., Hu, J., O'Kelly, C. J., Medina, M., Kühl, Michael & Verbruggen, H., 2023, In: Seminars in Cell and Developmental Biology. 134, p. 27-36 10 p.

    Research output: Contribution to journalReviewResearchpeer-review

  7. Published

    High-latitude vegetation changes will determine future plant volatile impacts on atmospheric organic aerosols

    Tang, Jing, Zhou, P., Miller, P. A., Schurgers, Guy, Gustafson, A., Makkonen, R., Fu, Y. H. & Rinnan, Riikka, 2023, In: npj Climate and Atmospheric Science. 6, 1, 13 p., 147.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Comment on “Intrinsic protein disorder uncouples affinity from binding specificity

    Teilum, Kaare, Olsen, Johan Gotthardt & Kragelund, Birthe Brandt, 2023, In: Protein Science. 32, 4, 2 p., e4602.

    Research output: Contribution to journalComment/debateResearchpeer-review

  9. Published

    Possible signs of recovery of the nearly extirpated Spitsbergen bowhead whales: calves observed in east Greenland

    Tervo, O. M., Louis, Marie Georgette Yolande J, Sinding, Mikkel Holger Strander, Heide-Jørgensen, M. P. & Hansen, R. G., 2023, In: Polar Research. 42, 4 p., 8809.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

    Tesei, Giulio & Lindorff-Larsen, Kresten, 2023, In: Open Research Europe. 2, 94, 24 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    DeepPeptide predicts cleaved peptides in proteins using conditional random fields

    Teufel, Felix Georg, Refsgaard, J. C., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Bioinformatics (Oxford, England). 39, 10, 6 p., btad616.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Deorphanizing Peptides Using Structure Prediction

    Teufel, Felix Georg, Refsgaard, J. C., Kasimova, M. A., Deibler, K., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Journal of Chemical Information and Modeling. 63, 9, 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    GraphPart: homology partitioning for biological sequence analysis

    Teufel, Felix Georg, Gíslason, M. H., Almagro Armenteros, J. J., Johansen, A. R., Winther, Ole & Nielsen, H., 2023, In: NAR Genomics and Bioinformatics. 5, 4, 9 p., lqad088.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Drying of Springs in the Himalayan Region of Nepal: Perspectives of Local Government Leaders on Causes, Consequences, and Conservation Efforts

    Thapa, B., Bhattarai, C., Dahal, N., Tiwari, S. & Jacobsen, Dean, 2023, In: Mountain Research and Development. 43, 4, p. R9-R15 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    How genomics can help biodiversity conservation

    The European Reference Genome Atlas Consortium, T. E. R. G. A. C., 2023, In: Trends in Genetics. 39, 7, 15 p.

    Research output: Contribution to journalReviewResearchpeer-review

  16. Published

    Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations

    Thomasen, Emil, Cuneo, M. J., Mittag, T. & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 23 p., e84147.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Flock social behaviour and vocal communication in Eupsittula conures

    Thomsen, Heidi Maria, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.

    Research output: Book/ReportPh.D. thesisResearch

  18. Published

    The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria

    Thorsen, Jonathan Jan Ilve, Li, Xuan Ji, Peng, Shuang, Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, Christina Egeø, Leal Rodriguez, C., Widdowson, Michael Lawrence, Neumann, A. U., Trivedi, Urvish, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Nature Communications. 14, 12 p., 6668.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    A novel splice-affecting HNF1A variant with large population impact on diabetes in Greenland

    Thuesen, A. C. B., Stæger, F. F., Kaci, A., Solheim, M. H., Aukrust, I., Jørsboe, E., Santander, C. G., Andersen, M. K., Li, Z., Gilly, A., Stinson, S. E., Gjesing, A. P., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Grarup, N., Jørgensen, M. E., Zeggini, E., Bjørkhaug, L., Njølstad, P. R. & 3 others, Albrechtsen, Anders, Moltke, Ida & Hansen, Torben, 2023, In: The Lancet Regional Health - Europe. 24, 12 p., 100529.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Interpreting the molecular mechanisms of disease variants in human transmembrane proteins

    Tiemann, Johanna Katarina Sofie, Zschach, Henrike, Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Biophysical Journal. 122, 11, 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    The cellular 3D printer of a marine bristle worm—chaetogenesis in Platynereis dumerilii (Audouin & Milne Edwards, 1834) (Annelida)

    Tilic, E., Herkenrath, T., Kirfel, G. & Bartolomaeus, T., 2023, In: Cell and Tissue Research. 391, p. 305-322

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Use of Probiotics to Control Biofilm Formation in Food Industries

    Tomé, A. R., Carvalho, F. M., Teixeira-Santos, R., Burmølle, Mette, Mergulhão, F. J. M. & Gomes, L. C., 2023, In: Antibiotics. 12, 4, 17 p., 754.

    Research output: Contribution to journalReviewResearchpeer-review

  23. Published

    Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?

    Tong, Shuai, Ashikari, M., Nagai, K. & Pedersen, Ole, 2023, In: Rice. 16, 1, 20 p., 13.

    Research output: Contribution to journalReviewResearchpeer-review

  24. Published

    Responses of key root traits in the genus Oryza to soil flooding mimicked by stagnant, deoxygenated nutrient solution

    Tong, Shuai, Kjær, Johan Emil, Peralta Ogorek, Lucas León, Pellegrini, Elisa, Song, Zhiwei, Pedersen, Ole & Herzog, Max, 2023, In: Journal of Experimental Botany. 74, 6, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    The resilience journey of rice: Root traits, genome editing and silicon-mediated strategies for enhanced abiotic stress tolerance in rice

    Tong, Shuai, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/ReportPh.D. thesisResearch

  26. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Editorial: Drivers of host-microbiome interactions in the rhizosphere

    Topalovic, Olivera, Koorem, K. & Wilschut, R. A., 2023, In: Frontiers in Plant Science. 14, 3 p., 1294388.

    Research output: Contribution to journalEditorialResearchpeer-review

  28. Published

    Nematodes as suppressors and facilitators of plant performance

    Topalovic, Olivera & Geisen, S., 2023, In: New Phytologist. 238, 6, p. 2305-2312

    Research output: Contribution to journalReviewResearchpeer-review

  29. Published

    The histone demethylase KDM5C functions as a tumor suppressor in AML by repression of bivalently marked immature genes

    Trempenau, M. L., Schuster, Mikkel Bruhn, Pundhir, Sachin, Araújo Pereira, Mafalda, Kalvisa, A., Tapia, Marta Cecylia, Su, Jinyu, Ge, Y., de Boer, Bauke, Balhuizen, Alexander, Bagger, F. O., Shliaha, P., Sroczynska, P., Walfridsson, J., Grønbæk, Kirsten, Theilgaard-Mønch, Kim, Jensen, O. N., Helin, K. & Porse, Bo Torben, 2023, In: Leukemia. 37, 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Parental exposure to heat waves improves offspring reproductive investment in Tetranychus urticae (Acari: Tetranychidae), but not in its predator, Phytoseiulus persimilis (Acari: Phytoseiidae)

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B., Scalmani, I. & Walzer, A., 2023, In: Ecology and Evolution. 13, 11, 20 p., e10748.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Reproducing during Heat Waves: Influence of Juvenile and Adult Environment on Fecundity of a Pest Mite and Its Predator

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B., Serve, H. C. & Walzer, A., 2023, In: Biology. 12, 4, 22 p., 554.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Comparative molecular and morphological species delineation of Halammohydra Remane, 1927 (Hydrozoa): with the description of four new species

    Tödter, L., Worsaae, Katrine & Schmidt-Rhaesa, A., 2023, In: Organisms Diversity and Evolution. 23, p. 455-476 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Cold-stimulated brown adipose tissue activation is related to changes in serum metabolites relevant to NAD+ metabolism in humans

    U-Din, M., de Mello, V. D., Tuomainen, M., Raiko, J., Niemi, T., Fromme, T., Klåvus, A., Gautier, N., Haimilahti, K., Lehtonen, M., Kristiansen, Karsten, Newman, J. W., Pietiläinen, K. H., Pihlajamäki, J., Amri, E. Z., Klingenspor, M., Nuutila, P., Pirinen, E., Hanhineva, K. & Virtanen, K. A., 26 Sep 2023, In: Cell Reports. 42, 9, 23 p., 113131.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Emerging roles of the CIP2A–TopBP1 complex in genome integrity

    Ummethum, Henning Ole, Li, Jiayi, Lisby, Michael & Østergaard, Vibe Hallundbæk, 2023, In: NAR Cancer. 5, 4, 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Accurate protein stability predictions from homology models

    Valanciute, A., Nygaard, L., Zschach, Henrike, Maglegaard Jepsen, M., Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 66-73 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Evaluation of population structure inferred by principal component analysis or the admixture model

    Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Plant traits and associated data from a warming experiment, a seabird colony, and along elevation in Svalbard

    Vandvik, V., Halbritter, A. H., Althuizen, I. H. J., Christiansen, C. T., Henn, J. J., Jónsdóttir, I. S., Klanderud, K., Macias-Fauria, M., Malhi, Y., Maitner, B. S., Michaletz, S., Roos, R. E., Telford, R. J., Bass, P., Björnsdóttir, K., Bustamante, L. L. V., Chmurzynski, A., Chen, S., Haugum, S. V., Kemppinen, J. & 15 others, Lepley, K., Li, Y., Linabury, M., Matos, I. S., Neto-Bradley, B. M., Ng, M., Niittynen, P., Östman, S., Pánková, K., Roth, N., Castorena, M., Spiegel, M., Thomson, E., Vågenes, A. S. & Enquist, B. J., 2023, In: Scientific Data. 10, 1, 21 p., 578.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Structural characterization of human tryptophan hydroxylase 2 reveals that L-Phe is superior to L-Trp as the regulatory domain ligand

    Vedel, I. M., Prestel, Andreas, Zhang, Z., Skawinska, N. T., Stark, H., Harris, Pernille, Kragelund, Birthe Brandt & Peters, G. H. J., 2023, In: Structure (London, England : 1993). 31, 6, p. 689-699e6 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Decoupled phylogenetic and functional diversity in European grasslands

    Večeřa, M., Axmanová, I., Chytrý, M., Divíšek, J., Ndiribe, C., Mones, G. V., Čeplová, N., Aćić, S., Bahn, M., Bergamini, A., Boenisch, G., Biurrun, I., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Cornelissen, J. H. C., Dengler, J., Jansen, F., Jansen, S. & 17 others, Kattge, J., Kozub, Ł., Kuzemko, A., Minden, V., Mitchell, R. M., Moeslund, J. E., Mori, A. S., Niinemets, Ü., Ruprecht, E., Rusina, S., Šilc, U., Soudzilovskaia, N. A., van Bodegom, P. M., Vassilev, K., Weiher, E., Wright, I. J. & Lososová, Z., 2023, In: Preslia. 95, 4, p. 413-445 33 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes

    Vold, Victoria Amstrup, Glanville, S., Klærke, Dan Arne & Pedersen, Per Amstrup, 2023, In: PLoS ONE. 18, 2, 16 p., e0281868.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants

    von Bülow, Sören, Sikora, M., Blanc, F. E. C., Covino, R. & Hummer, G., 2023, In: PLOS Computational Biology. 19, 1, 15 p., e1010822.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Multi-level combinatoriality in magpie non-song vocalizations

    Walsh, S. L., Engesser, Sabrina, Townsend, S. W. & Ridley, A. R., 2023, In: Journal of the Royal Society Interface. 20, 199, 11 p., 20220679.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    RNA trafficking and subcellular localization—a review of mechanisms, experimental and predictive methodologies

    Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2023, In: Briefings in Bioinformatics. 24, 5, 14 p., bbad249.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Cooperative antibiotic resistance facilitates horizontal gene transfer

    Wang, Q., Wei, S., Silva, A. F. & Madsen, Jonas Stenløkke, 2023, In: ISME Journal. 17, 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Enhanced foliar 15N enrichment with increasing nitrogen addition rates: Role of plant species and nitrogen compounds

    Wang, Y., Niu, G., Wang, R., Rousk, Kathrin, Li, A., Hasi, M., Wang, C., Xue, J., Yang, G., Lü, X., Jiang, Y., Han, X. & Huang, J., 2023, In: Global Change Biology. 29, 6, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Lactate and Lactylation: Clinical Applications of Routine Carbon Source and Novel Modification in Human Diseases

    Wang, Z., Hao, Dan, Zhao, S., Zhang, Z., Zeng, Z. & Wang, X., 2023, In: Molecular and Cellular Proteomics. 22, 10, 16 p., 100641.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Limited genetic variations of the Rh5-CyRPA-Ripr invasion complex in Plasmodium falciparum parasite population in selected malaria-endemic regions, Kenya

    Waweru, H., Kanoi, B. N., Kuja, J. O., Maranga, M., Kongere, J., Maina, M., Kinyua, J. & Gitaka, J., 2023, In: Frontiers in Tropical Diseases. 4, 9 p., 1102265.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland

    Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, Kirsten Seestern & Jeppesen, E., 2023, In: Frontiers in Ecology and Evolution. 11, 15 p., 1177638.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

    Weng, Z., Ruan, F., Chen, W., Chen, Z., Xie, Y., Luo, M., Xie, Z., Zhang, C., Wang, J., Sun, Y., Fang, Y., Guo, M., Tan, C., Chen, W., Tong, Y., Li, Y., Wang, H. & Tang, C., 2023, In: Genome Biology. 24, 1, 29 p., 61.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

    Wenger, Alice, Biran, Alva Ada, Alcaraz, N., Redó-Riveiro, A., Sell, Annika Charlotte, Krautz, Robert, Flury, Valentin, Reveron-Gomez, Nazaret, Solis-Mezarino, V., Völker-Albert, M., Imhof, A., Andersson, Robin, Brickman, Joshua Mark & Groth, Anja, 2023, In: Nature Genetics. 55, 9, p. 1567-1578 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Impact of Holocene environmental change on the evolutionary ecology of an Arctic top predator

    Westbury, Michael Vincent, Brown, S. C., Lorenzen, J., O'Neill, S., Scott, M. B., McCuaig, J., Cheung, C., Armstrong, E., Valdes, P. J., Castruita, J. A. S., Cabrera, Andrea A., Blom, Stine Keibel, Dietz, R., Sonne, C., Louis, Marie Georgette Yolande J, Galatius, A., Fordham, D. A., dos Santos Ribeiro, Sofia Isabel, Szpak, P. & Lorenzen, Eline, 2023, In: Science Advances. 9, 45, 12 p., eadf3326.

    Research output: Contribution to journalJournal articleResearchpeer-review