Department of Biology

 

 
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  1. 2021
  2. Published

    A guide for field studies and environmental monitoring of mixoplankton populations

    Mitra, A. (ed.), Gypens, N. (ed.), Hansen, Per Juel (ed.) & Flynn, K. J. (ed.), 2021, Zenodo.

    Research output: Book/Report › Report › Research

  3. Published

    The strange Pelagophyceae: Now also defined ultrastructurally?

    Moestrup, Øjvind, 2021, In: Journal of Phycology. 57, 2, p. 393-395 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  4. Published

    Gut Microbiota Perturbation in IgA Deficiency Is Influenced by IgA-Autoantibody Status

    Moll, J. M., Myers, P. N., Zhang, C., Eriksen, C., Wolf, J., Appelberg, K. S., Lindberg, G., Bahl, M. I., Zhao, H., Pan-Hammarström, Q., Cai, K., Jia, H., Borte, S., Nielsen, H. B., Kristiansen, Karsten, Brix, S. & Hammarström, L., 2021, In: Gastroenterology. 160, 7, p. 2423-2434.e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull)

    Moltke, Ida, Korneliussen, Thorfinn Sand, Seguin-Orlando, A., Moreno Mayar, J. Víctor, LaPointe, E., Billeck, W. & Willerslev, Eske, 2021, In: Science Advances. 7, 44, 7 p., eabh2013.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    NetTCR-2.0 enables accurate prediction of TCR-peptide binding by using paired TCRα and β sequence data

    Montemurro, A., Schuster, Viktoria, Povlsen, H. R., Bentzen, A. K., Jurtz, V., Chronister, W. D., Crinklaw, A., Hadrup, S. R., Winther, Ole, Peters, B., Jessen, L. E. & Nielsen, M., 2021, In: Communications Biology . 4, 13 p., 1060.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Effects of latitude and conspecific plant density on insect leaf herbivory in oak saplings and seedlings

    Moreira, X., Abdala-Roberts, L., De Frenne, P., Galmán, A., Gaytán, Á., Jaatinen, R., Lago-Núñez, B., Meeussen, C., Pulkkinen, P., Rasmussen, P. U., Ten Hoopen, J. P. J. G., Timmermans, B. G. H., Vázquez-González, C., Bos, N., Castagneyrol, B. & Tack, A. J. M., 2021, In: American Journal of Botany. 108, 1, p. 172-176 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Modeling transfer of vaginal microbiota from mother to infant in early life

    Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Brejnrod, A. D., Balle, C., Thorsen, J., Krogfelt, K. A., Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: eLife. 10, 19 p., e57051.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Contrasting use of space by two migratory Afro-Palearctic warblers on their African non-breeding grounds

    Mostafa, D. A. A., Willemoes, M., Salewski, V., Ortvad, T. E., Dabelsteen, Torben & Thorup, Kasper, 2021, In: Journal of Ornithology. 162, 3, p. 813-821 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The role of sirtuin 1 on the induction of trained immunity

    Mourits, V. P., Helder, L. S., Matzaraki, V., Koeken, V. A. C. M., Groh, L., de Bree, L. C. J., Moorlag, S. J. C. F. M., van der Heijden, C. D. C. C., Keating, S. T., van Puffelen, J. H., Jaeger, M., Joosten, L. A. B. & Netea, M. G., 2021, In: Cellular Immunology. 366, 8 p., 104393.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Large Intronic Deletion of the Fragile Site Gene PRKN Dramatically Lowers Its Fragility Without Impacting Gene Expression

    Munk, S. H. N., Voutsinos, Vasileios & Østergaard, Vibe Hallundbæk, 2021, In: Frontiers in Genetics. 12, 9 p., 695172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Soil microorganisms decrease barley biomass uniformly across contrasting nitrogen availability

    Munkager, V., Altenburger, A., Priemé, Anders, Bang-Andreasen, T., Rønn, Regin, Vestergård, M. & Ekelund, Flemming, 2021, In: European Journal of Soil Biology. 104, 9 p., 103311.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Comparative Genomics Reveals Prophylactic and Catabolic Capabilities of Actinobacteria within the Fungus-Farming Termite Symbiosis

    Murphy, Rob, Benndorf, R., de Beer, Z. W., Vollmers, J., Kaster, A., Beemelmanns, C. & Poulsen, Michael, Mar 2021, In: mSphere. 6, 2, 12 p., e01233-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico

    Murphy, Rob, Palm, M., Mustonen, V., Warringer, J., Farewell, A., Parts, L. & Moradigaravand, D., 2021, In: mSphere. 6, 1, 15 p., e00738-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    New insights into survival strategies of tardigrades

    Møbjerg, Nadja & Neves, R., 2021, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 254, 6 p., 110890.

    Research output: Contribution to journal › Review › Research › peer-review

  16. Published

    The role of a traditional and western diet on glucose homeostasis in Greenlandic Inuit carriers and non-carriers of type 2 diabetes variant in the TBC1D4 gene: A protocol for a randomized clinical trial

    Møller, G., Lind, M. V., Hauptmann, A. L., Senftleber, N., Hansen, C. B., Hansen, Torben, Jørgensen, M. E. & Lauritzen, Lotte, 2021, In: Contemporary Clinical Trials Communications. 21, 6 p., 100734.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Occipital Horn Syndrome as a Result of Splice Site Mutations in ATP7A. No Activity of ATP7A Splice Variants Missing Exon 10 or Exon 15

    Møller, L. B., Mogensen, M., Weaver, D. D. & Pedersen, Per Amstrup, 2021, In: Frontiers in Molecular Neuroscience. 14, 12 p., 532291.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Keeping the shoot above water – submergence triggers antithetical growth responses in stems and petioles of watercress (Nasturtium officinale)

    Müller, J. T., van Veen, H., Bartylla, M. M., Akman, M., Pedersen, Ole, Sun, P., Schuurink, R. C., Takeuchi, J., Todoroki, Y., Weig, A. R., Sasidharan, R. & Mustroph, A., 2021, In: New Phytologist. 229, 1, p. 140-155

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    “Brittleworms”: Ultrastructure and arrangement of the calcified chaetae of Euphrosine (Amphinomida, Annelida)

    Müller, J., Schumacher, A., Borda, E., Rouse, G. W., Bartolomaeus, T. & Tilic, E., 2021, In: Invertebrate Biology. 140, 4, 13 p., e12353.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Intraspecific variation in thermal tolerance differs between tropical and temperate fishes

    Nati, J. J. H., Svendsen, M. B. S., Marras, S., Killen, S. S., Steffensen, John Fleng, McKenzie, D. J. & Domenici, P., 2021, In: Scientific Reports. 11, 8 p., 21272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Regulate or tolerate: Thermal strategy of a coral reef flat resident, the epaulette shark, Hemiscyllium ocellatum

    Nay, T. J., Longbottom, R. J., Gervais, C. R., Johansen, J. L., Steffensen, John Fleng, Rummer, J. L. & Hoey, A. S., 2021, In: Journal of Fish Biology. 98, 3, p. 723-732 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Species interactions alter the selection of thermal environment in a coral reef fish

    Nay, T. J., Johansen, J. L., Rummer, J. L., Steffensen, John Fleng & Hoey, A. S., 2021, In: Oecologia. 196, 2, p. 363-371 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs

    Nel, W. J., de Beer, Z. W., Wingfield, M. J., Poulsen, Michael, Aanen, D. K., Wingfield, B. D. & Duong, T. A., 2021, In: Mycologia. 113, 6, p. 1199-1217

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    New records on the rich loriciferan fauna of Trezen ar Skoden (Roscoff, France): Description of two new species of Nanaloricus and the new genus Scutiloricus

    Neves, R. C., Kristensen, Reinhardt Møbjerg & Møbjerg, Nadja, 2021, In: PLoS ONE. 16, 5, 42 p., e0250403.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Insight into Calcium-Binding Motifs of Intrinsically Disordered Proteins

    Newcombe, Estella Anne, Fernandes, Catarina, Lundsgaard, J. E., Brakti, Inna, Lindorff-Larsen, Kresten, Langkilde, Annette Eva, Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Biomolecules. 11, 8, 17 p., 1173.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Morphological and genetic analyses of Ostreopsis (Dinophyceae, Gonyaulacales, Ostreopsidaceae) species from Vietnamese waters with a re-description of the type species, O. siamensis

    Nguyen-Ngoc, L., Doan-Nhu, H., Larsen, Jacob, Phan-Tan, L., Nguyen, X., Lundholm, Nina, Chu, T. V. & Huynh-Thi, D. N., 2021, In: Journal of Phycology. 57, 3, p. 1059-1083

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Establishment of heterochromatin in domain-size-dependent bursts

    Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Neuropeptide expression in the box jellyfish Tripedalia cystophora - New insights into the complexity of a "simple" nervous system

    Nielsen, S. K. D., Koch, Thomas Lund, Wiisbye, S. H., Grimmelikhuijzen, Cornelis (Cok) & Garm, Anders Lydik, 2021, In: Journal of Comparative Neurology. 529, 11, p. 2865-2882 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The Cubozoan Nervous System: From Neuropeptides to Learning Formation in the Box Jellyfish Tripedalia cystophora

    Nielsen, S. K. D., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 246 p.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    Multiplexed assays reveal effects of missense variants in MSH2 and cancer predisposition

    Nielsen, S. V., Hartmann-Petersen, Rasmus, Stein, Amelie & Lindorff-Larsen, Kresten, 2021, In: PLOS Genetics. 17, 4, 6 p., e1009496.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Drier, darker and more fertile: 140 years of plant habitat change driven by land-use intensification

    Nielsen, T. F., Sand-Jensen, Kaj & Bruun, Hans Henrik, 2021, In: Journal of Vegetation Science. 32, 4, 16 p., e13066.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids

    Nielsen, Tue Kjærgaard, Horemans, B., Lood, C., T’Syen, J., van Noort, V., Lavigne, R., Ellegaard-Jensen, L., Hylling, Ole, Aamand, J., Springael, D. & Hansen, Lars Hestbjerg, 2021, In: Scientific Reports. 11, 12 p., 18943.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Mapping the human genetic architecture of COVID-19

    Niemi, M. E. K., Karjalainen, J., Liao, R. G., Neale, B. M., Daly, M., Ganna, A., Pathak, G. A., Andrews, S. J., Kanai, M., Veerapen, K., Fernandez-Cadenas, I., Schulte, E. C., Striano, P., Marttila, M., Minica, C., Marouli, E., Karim, M. A., Wendt, F. R., Savage, J., Sloofman, L. & 41 others, Butler-Laporte, G., Kim, H., Kanoni, S., Okada, Y., Byun, J., Han, Y., Uddin, M. J., Smith, G. D., Willer, C. J., Buxbaum, J. D., Karjalainen, J., Mehtonen, J., Folkersen, L., Moltke, Ida, Hinney, A., Wang, C., Ellinghaus, D., Brunak, Søren, Castro, P., Guindo Martínez, Marta, Lee, J. Y., Loos, Ruth, Zhao, J. H., Sun, Y. V., Wang, B., Parker, R., Garcia, S. M., Smith, O., Davis, C., COVID-19 Host Genetics Initiative, C. H. G. I., 23andMe COVID-19 Team, 2. C. T., Norwegian SARS-CoV-2 Study Grp, N. S. S. G., Humanitas COVID-19 Task Force, H. C. T. F., Humanitas Gavazzeni COVID-19 Task, H. G. C. T., FHoGID, F., RegCOVID, R., P-PredictUs, P., SeroCOVID, S., CRiPSI, C., Genes & Hlth Res Team, G. &. H. R. T. & UCLA Hlth ATLAS Data Mart Working, U. H. A. D. M. W., 2021, In: Nature. 600, p. 472-477

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Improved metagenome binning and assembly using deep variational autoencoders

    Nissen, J. N., Johansen, Joachim, Allesoe, R. L., Sonderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Jensen, Lars Juhl, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2021, In: Nature Biotechnology. 39, p. 555-560

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Co-option of immune effectors by the hormonal signalling system triggering metamorphosis in Drosophila melanogaster

    Nunes, C., Koyama, Takashi & Sucena, É., 2021, In: PLOS Genetics. 17, 11, 24 p., e1009916.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Endocrine regulation of immunity in insects

    Nunes, C., Sucena, É. & Koyama, Takashi, 2021, In: FEBS Journal. 288, 13, p. 3928-3947 20 p.

    Research output: Contribution to journal › Review › Research › peer-review

  37. Published

    De vigtigste levesteder for rødlistede arter i Danmark

    Nygaard, B., Moeslund, J. E., Ejrnæs, R., Mielec, C. L., Carl, H., Clausen, K. K., Dylmer, E., Elmeros, M., Flensted, K., Fog, K., Goldberg, I., Hansen, M. D. D., Helsing, F., Jørum, P., Lissner, J., Læssøe, T., Madsen, H. B., Misser, J., Olsen, K., Søchting, U. & 2 others, Wiberg-Larsen, P. & Wind, P., 2021, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 120 p. (Videnskabelig rapport fra DCE – Nationalt Center for Miljø og Energi; No. 470).

    Research output: Book/Report › Report › Research › peer-review

  38. Published

    A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in patients with major depressive disorder

    Nøhr, A. K., Lindow, M., Forsingdal, A., Demharter, S., Nielsen, T., Buller, R., Moltke, Ida, Vitezic, M. & Albrechtsen, Anders, 2021, In: Neuropsychopharmacology. 46, 7, p. 1324-1332 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data

    Nøhr, A. K., Hanghøj, Kristian Ebbesen, Garcia Erill, Genís, Li, Zilong, Moltke, Ida & Albrechtsen, Anders, 2021, In: G3: Genes, Genomes, Genetics. 11, 8, 8 p., jkab174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Predictors and trajectories of treatment response to SSRIs in patients suffering from PTSD

    Nøhr, A. K., Eriksson, H., Hobart, M., Moltke, Ida, Buller, R., Albrechtsen, Anders & Lindgreen, S., 2021, In: Psychiatry Research. 301, 8 p., 113964.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Levels of omega 3 fatty acids, vitamin D, dioxins and dioxin-like PCBs in oily fish: a new perspective on the reporting of nutrient and contaminant data for risk–benefit assessments of oily seafood

    Nøstbakken, O. J., Rasinger, J. D., Hannisdal, R., Sanden, M., Frøyland, L., Duinker, A., Frantzen, S., Dahl, L. M., Lundebye, A. & Madsen, L., 2021, In: Environment International. 147, 11 p., 106322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts

    O'Brien, P. A., Andreakis, N., Tan, S., Miller, D. J., Webster, N. S., KU, thw266 & Bourne, D. G., 2021, In: Molecular Ecology. 30, 15, p. 3768-3782 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Comparative bioacoustics: a roadmap for quantifying and comparing animal sounds across diverse taxa

    Odom, K. J., Araya-Salas, M., Morano, J. L., Ligon, R. A., Leighton, G. M., Taff, C. C., Dalziell, A. H., Billings, A. C., Germain, Ryan Ross, Pardo, M., de Andrade, L. G., Hedwig, D., Keen, S. C., Shiu, Y., Charif, R. A., Webster, M. S. & Rice, A. N., 2021, In: Biological Reviews. 96, 4, p. 1135-1159 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    N-acetylcysteine protects ovarian follicles from ischemia-reperfusion injury in xenotransplanted human ovarian tissue

    Olesen, H. Ø., Pors, S. E., Jensen, L. B., Grønning, A. P., Lemser, C. E., Heimbürger, M. T. H. N., Mamsen, L. S., Getreu, N., Christensen, Søren Tvorup, tcg964, tcg964 & Kristensen, S. G., 2021, In: Human Reproduction. 36, 2, p. 429-443 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Environmental and Pathogenic Carbapenem Resistant Bacteria Isolated from a Wastewater Treatment Plant Harbour Distinct Antibiotic Resistance Mechanisms

    Oliveira, M., Leonardo, I. C., Nunes, M., Silva, A. F. & Barreto Crespo, M. T., 2021, In: Antibiotics. 10, 9, 13 p., 1118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Correlated transcriptional responses provide insights into the synergy mechanisms of the furazolidone, vancomycin, and sodium deoxycholate triple combination in escherichia coli

    Olivera, Catrina Diane Peralta, Cox, M. P., Rowlands, G. J. & Rakonjac, J., 2021, In: mSphere. 6, 5, 14 p., e00627-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Ab initio determination of the shape of membrane proteins in a nanodisc

    Orioli, S., Hansen, C. G. H. & Arleth, Lise, 2021, In: Acta crystallographica Section D: Structural biology . 77, p. 176-193 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved]

    Pai, S., Weber, P., Isserlin, R., Kaka, H., Hui, S., Shah, M. A., Giudice, L., Giugno, R., Nøhr, A. K., Baumbach, J. & Bader, G. D., 2021, In: F1000Research. 9, 42 p., 1239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Drosophila TNFRs Grindelwald and Wengen bind Eiger with different affinities and promote distinct cellular functions

    Palmerini, V., Monzani, S., Laurichesse, Quentin Charles B, Loudhaief, Rihab, Mari, S., Cecatiello, V., Olieric, V., Pasqualato, S., Colombani, Julien, Andersen, Ditte Skovaa & Mapelli, M., 2021, In: Nature Communications. 12, 12 p., 2070.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Modes of genetic adaptations underlying functional innovations in the rumen

    Pan, X., Cai, Y., Li, Z., Chen, X., Heller, R., Wang, N., Wang, Y., Zhao, C., Wang, Y., Xu, H., Li, S., Li, M., Li, C., Hu, S., Li, H., Wang, K., Chen, L., Wei, B., Zheng, Z., Fu, W. & 20 others, Yang, Y., Zhang, T., Hou, Z., Yan, Y., Lv, X., Sun, W., Li, X., Huang, S., Liu, L., Mao, S., Liu, W., Hua, J., Li, Z., KU, thw266, Chen, Y., Wang, X., Qiu, Q., Dalrymple, B. P., Wang, W. & Jiang, Y., 2021, In: Science China Life Sciences. 64, 1, p. 1-21 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Fine-structural characterization and phylogeny of Sphaerodinium (Suessiales, Dinophyceae), with the description of an unusual type of freshwater dinoflagellate cyst

    Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 2021, In: European Journal of Protistology. 78, 21 p., 125770.

    Research output: Contribution to journal › Journal article › Research › peer-review

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