- 2024
- Published
Aspects of Neurovascular Signaling Mechanisms in Migraine
Rasmussen, Rikke Holm, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 129 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Assessment of salt-affected soil in selected rice irrigation schemes in Tanzania: understanding salt types for optimizing management approaches
Omar, M. M., Massawe, B. H. J., Shitindi, M. J., Pedersen, Ole, Meliyo, J. L. & Fue, K. G., 2024, In: Frontiers in Soil Science. 4, 14 p., 1372838.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial chromosomes and their replication
Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- E-pub ahead of print
BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum
Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis
Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages
Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cadmium accumulation in organisms from a spruce plantation amended with wood ash - an environmental risk?
Ekelund, Flemming, Cruz-Paredes, C., Jørgensen, Christian Hviid Friis, Vestergård, M., Rasmussen, K. R., Mortensen, Louise Hindborg, Kindtler, Nikolaj Lunding, Rønn, Regin, Christensen, Søren, Johansen, Jesper Liengaard & Kjøller, Rasmus, 2024, In: Trees, Forests and People. 15, 6 p., 100499.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Calls of the little auk (Alle alle) chicks reflect their behavioural contexts
Osiecka, A. N., Briefer, Elodie, Kidawa, D., Żurawska, F. & Wojczulanis-Jakubas, K., 2024, In: PLoS ONE. 19, 2, 14 p., e0299033.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Can large language models reason about medical questions?
Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, Ole, 2024, In: Patterns. 5, 3, 12 p., 100943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination
Hansen, A. L., Theisen, Frederik Friis, Crehuet, R., Marcos, E., Aghajari, N. & Willemoës, Martin, 2024, In: ACS Synthetic Biology. 13, 3, p. 862-875 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cellular and molecular mechanisms of aspartoacylase and its role in Canavan disease
Grønbæk-Thygesen, Martin & Hartmann-Petersen, Rasmus, 2024, In: Cell and Bioscience. 14, 1, 33 p., 45.Research output: Contribution to journal › Review › Research › peer-review
- Published
Changes in composition and function of soil microbial communities during secondary succession in oldfields on the Tibetan Plateau
Ma, Hui, Yan, X., Gao, E., Qiu, Y., Sun, X., Wang, S., Wang, Y., Bruun, Hans Henrik, He, Z., Shi, X. & Zhao, Z., 2024, In: Plant and Soil. 495, p. 429–443 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
Gersing, S., Schulze, Thea Klarsø, Cagiada, Matteo, Stein, Amelie, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Genome Biology. 25, 1, 22 p., 98.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs
Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cholesterol-binding motifs in STING that control endoplasmic reticulum retention mediate anti-tumoral activity of cholesterol-lowering compounds
Zhang, B. C., Laursen, M. F., Hu, L., Hazrati, H., Narita, R., Jensen, L. S., Hansen, A. S., Huang, J., Zhang, Y., Ding, X., Muyesier, M., Nilsson, E., Banasik, A., Zeiler, C., Mogensen, T. H., Etzerodt, A., Agger, R., Johannsen, M., Kofod-Olsen, E., Paludan, S. R. & 1 others, , 2024, In: Nature Communications. 15, 1, 17 p., 2760.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromatin image-driven modelling
Kadlof, M., Banecki, K., Chilinski, Mateusz & Plewczynski, D., 2024, In: Methods. 226, p. 54-60 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Circle-seq based method for eccDNA synthesis and its application as a canonical promoter independent vector for robust microRNA overexpression
Yu, J., Zhang, H., Han, Peng, Jiang, X., Li, J., Li, B., Yang, S., He, C., Mao, S., Dang, Y. & Xiang, X., 2024, In: Computational and Structural Biotechnology Journal. 23, p. 358-368 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata)
Defourneaux, Eloïse Pauline Sarah, Herranz, Maria, Armenteros, M., Sørensen, Martin Vinther, Norenburg, J. L., Park, T. & Worsaae, Katrine, 2024, In: Scientific Reports. 14, 1, 20 p., 9296.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comment on “DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction”
Vinther, Jeppe, 2024, In: Analytical Chemistry. 96, 1, p. 606-609 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Comparative skull osteology of Amphisbaena arda and Amphisbaena vermicularis (Squamata: Amphisbaenidae)
Paiva, C. L., Hipsley, Christy Anna, Müller, J., Zaher, H. & Costa, H. C., 2024, In: Journal of Morphology. 285, 5, 14 p., e21702.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly
Hu, T., Chen, J., Lin, X., He, W., Liang, H., Wang, M., Li, W., Wu, Z., Han, Mo, Jin, X., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: Scientific Reports. 14, 1, 9 p., 1292.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conformational ensembles of the human intrinsically disordered proteome
Tesei, Giulio, Trolle, A. I., Jonsson, Nicolas, Betz, J., Knudsen, F. E., Pesce, Francesco, Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2024, In: Nature. 626, p. 897-904 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Control of Vibrio vulnificus proliferation in the Baltic Sea through eutrophication and algal bloom management
Riedinger, D. J., Fernández-juárez, V., Delgado, L. F., Sperlea, T., Hassenrück, C., Herlemann, D. P. R., Pansch, C., Kataržytė, M., Bruck, F., Ahrens, A., Rakowski, M., Piwosz, K., Stevenson, A., Reusch, T. B. H., Gyraitė, G., Schulz-bull, D., Benterbusch-brockmöller, H., Kube, S., Dupke, S., Andersson, A. F. & 2 others, , 2024, In: Communications Earth & Environment. 5, 1, 12 p., 246.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Controlling biases in targeted plant removal experiments
Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering & Väisänen, M., 2024, In: New Phytologist. 242, 4, p. 1835-1845 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements
Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Crop management strategies shape the shared temporal dynamics of soil food web structure and functioning
Hedde, M., Coudrain, V., Maron, P. A., Chauvat, M., Cheviron, N., Ekelund, Flemming, Mougin, C., Mary, B., Recous, S., Villenave, C. & Thébault, E., 2024, In: Agriculture, Ecosystems and Environment. 370, 11 p., 109058.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cross-feeding während der Ausbreitung auf Oberflächen
Kovács, Á. T. & Kiesewalter, Heiko T., 2024, In: BioSpektrum. 30, 1, p. 71 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Cytotoxicity of Prymnesium parvum extracts and prymnesin analogs on epithelial fish gill cells RTgill‑W1 and the human colon cell line HCEC‑1CT
Varga, E., Prause, H., Riepl, M., Hochmayr, N., Berk, D., Attakpah, E., Kiss, E., Medic, Nikola, Del Favero, G., Larsen, T. O., Hansen, Per Juel & Marko, D., 2024, In: Archives of Toxicology. 98, p. 999–1014 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2
Bjarnason, S., McIvor, J. A. P., Prestel, Andreas, Demény, K. S., Bullerjahn, J. T., Kragelund, Birthe Brandt, Mercadante, D. & Heidarsson, P. O., 2024, In: Nature Communications. 15, 1, 16 p., 1445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity
Lourenço, L., Ellegaard Bager, S., Ng, D. Y. K., Sheikh, Sanea, Kindtler, Nikolaj Lunding, Nielsen, Ida Broman, Frøslev, Tobias Guldberg & Ekelund, Flemming, 2024, In: Protist. 175, 2, 9 p., 126016.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering unique and shared interactions between the human gut microbiota and oral antidiabetic drugs
Ren, H., Shi, Z., Yang, F., Wang, S., Yuan, F., Li, T., Li, M., Zhu, J., Li, J., Wu, K., Zhang, Y., Ning, G., Kristiansen, Karsten, Wang, W., Gu, Y. & Zhong, H., 2024, In: iMeta. 3, 2, 9 p., e179.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning
Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2024, In: Bioinformatics. 40, 2, 10 p., btae065.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations
Høie, M. H., Gade, F. S., Johansen, J., Würtzen, C., Winther, Ole, Nielsen, M. & Marcatili, P., 2024, In: Frontiers in Immunology. 15, 12 p., 1322712.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium Crocosphaera
Filella, A., Umbricht, J., Klett, A., Vogts, A., Vannier, T., Grosso, O., Voss, M., Riemann, Lasse & Benavides, M., 2024, (E-pub ahead of print) In: Limnology and Oceanography Letters.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases
Guo, Zongxin, Orädd, F., Bågenholm, Viktoria, Grønberg, C., Ma, J. F., Ott, P., Wang, Y., Andersson, M., Pedersen, Per Amstrup, Wang, Kaituo & Gourdon, Pontus Emanuel, 2024, In: Nature Communications. 15, 1, 16 p., 2690.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Drosophila activins adapt gut size to food intake and promote regenerative growth
Christensen, Christian Fokdal, Laurichesse, Quentin Charles B, Loudhaief, Rihab, Colombani, Julien & Andersen, Ditte Skovaa, 2024, In: Nature Communications. 15, 1, 12 p., 273.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of inflammation-associated plasma proteins following faecal microbiota transplantation in patients with psoriatic arthritis and healthy controls: exploratory findings from the FLORA trial [Inkl. Correction]
Kragsnaes, M. S., Jensen, J. R. B., Nilsson, A. C., Malik, M. I., Munk, H. L., Pedersen, J. K., Horn, H. C., Kruhøffer, M., Kristiansen, Karsten, Mullish, B. H., Marchesi, J. R., Kjeldsen, J., Röttger, R. & Ellingsen, T., 2024, In: RMD Open. 10, 1, 13 p., e003750.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ETV2 induces endothelial, but not hematopoietic, lineage specification in birds
Weng, W., Deng, Y., Deviatiiarov, R., Hamidi, S., Kajikawa, E., Gusev, O., Kiyonari, H., KU, thw266 & Sheng, G., 2024, In: Life Science Alliance. 7, 6, 12 p., e202402694.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Early life factors and oral microbial signatures define the risk of caries in a Swedish cohort of preschool children
Eriksen, C., Boustedt, K., Sonne, Si Brask, Dahlgren, J., Kristiansen, Karsten, Twetman, Svante, Brix, S. & Roswall, J., 2024, In: Scientific Reports. 14, 1, 13 p., 8463.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Editorial: Microbial fermentation for improved sensory properties and functionality of sustainable foods
Verni, M., Holt, Sylvester & Rizzello, C. G., 2024, In: Frontiers in Microbiology. 15, 2 p., 1387745.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Editorial overview: New and revitalized old targets in metabolic disease
Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Editorial: Optics and ecophysiology of coral reef organisms: volume II
Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya
Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Efficient statistical and computational methods for large scale sequencing data
Li, Zilong, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.Research output: Book/Report › Doctoral thesis › Research
- Published
Endogenous Tagging of Ciliary Genes in Human RPE1 Cells for Live-Cell Imaging
Kuhns, S., Juhl, A. D., Anvarian, Zeinab, Wüstner, D., Pedersen, Lotte Bang & Andersen, J. S., 2024, Methods in Molecular Biology. Humana Press, p. 147-166 20 p. (Methods in Molecular Biology, Vol. 2725).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark
Pust, F. L., Frøslev, Tobias Guldberg, Kristensen, Reinhardt Møbjerg & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 20-33Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Environmental drivers of increased ecosystem respiration in a warming tundra
Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Björk, R. G., Böhner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N. & 56 others, , 2024, In: Nature. 629, 8010, p. 105-113 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer
Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extrachromosomal Circular DNA: An Emerging Potential Biomarker for Inflammatory Bowel Diseases?
Petito, V., Di Vincenzo, F., Putignani, L., Abreu, M. T., Regenberg, Birgitte, Gasbarrini, A. & Scaldaferri, F., 2024, In: Genes. 15, 4, 11 p., 414.Research output: Contribution to journal › Review › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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