Department of Biology

 

 
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  1. Published

    In situ PCR for detection and identification of fungal species

    Bindslev, L., Oliver, R. P. & Johansen, B., 2002, In: Mycological Research. 106, p. 277-279

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    In situ and experimental evidence for effects of elevated pH on protistan and metazoan grazers

    Hansen, B. W., Andersen, C. M. B., Hansen, Per Juel, Nielsen, T. G., Vismann, Bent & Tiselius, P., 2019, In: Journal of Plankton Research. 41, 3, p. 257–271 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    In situ dynamics of O2, pH, light and photosynthesis in ikaite tufa columns (Ikka Fjord, Greenland) - a unique microbial habitat

    Trampe, Erik, Larsen, Jens Erik Nybo, Glaring, M. A., Stougaard, P. & Kühl, Michael, 2016, In: Frontiers in Microbiology. 7, 13 p., 722.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    In situ hydrogen dynamics in a hot spring microbial mat during a diel cycle

    Revsbech, N. P., Trampe, Erik, Lichtenberg, Mads, Ward, D. M. & Kühl, Michael, 2016, In: Applied and Environmental Microbiology. 82, 14, p. 4209-4217 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    In situ incubation of iron(II)-bearing minerals and Fe(0) reveals insights into metabolic flexibility of chemolithotrophic bacteria in a nitrate polluted karst aquifer

    Visser, A. N., Martin, Joseph Donald, Osenbrück, K., Rügner, H., Grathwohl, P. & Kappler, A., 2024, In: Science of the Total Environment. 926, 16 p., 172062.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    In situ ingestion of microfibres by meiofauna from sandy beaches

    Gusmão, F., Di Domenico, M., Amaral, A. C. Z., Martinez Garcia, A., Gonzalez, B. C., Worsaae, Katrine, Ivar do Sul, J. A. & Cunha Lana, P. D., 2016, In: Environmental Pollution. 216, p. 584-590 7 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  7. Published

    In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

    Behrendt, L., Raina, J., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2018, In: I S M E Journal. 12, p. 556–567 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    In situ oxygen dynamics and carbon turnover in an intertidal sediment (Skallingen, Denmark)

    Walpersdorf, E. C., Kühl, Michael, Elberling, Bo, Andersen, Thorbjørn Joest, Hansen, Birger, Pejrup, M. & Glud, R. N., 2017, In: Marine Ecology - Progress Series. 566, p. 49-65 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    In situ oxygen dynamics in rhizomes of seagrass Posidonia sinuosa: impact of light, water column oxygen, current speed and wave velocity

    Olsen, Y. S., Fraser, M. W., Martin, B. C., Pomeroy, A., Lowe, R., Pedersen, Ole & Kendrick, G. A., 2018, In: Marine Ecology - Progress Series. 590, p. 67-77 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    In vitro characterization of a novel C,N-cyclometalated benzimidazole Ru(II) complex: stability, intracellular distribution and binding, effects on organic osmolyte homeostasis and induction of apoptosis

    Dam, C. S., Henarejos, S. A. P., Tsolakou, T., Segato, C. A., Gammelgaard, Bente, Yellol, G. S., Ruiz, J., Lambert, Ian Henry & Stürup, Stefan, 2015, In: Metallomics. 5, p. 885-895 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment.

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A. D., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, p. 1-15 e01450-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    In vitro digestion mimicking conditions in young and elderly reveals marked differences between profiles and potential bioactivity of peptides from meat and soy proteins

    Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Research International. 157, 11 p., 111215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    In vitro evaluation of the enantiomeric R- and S-1,1'-binaphthyl-2,2'-diaminodichlorido-Pt(II) complexes in human Burkitt lymphoma cells: emphasis on cellular accumulation, cytotoxicity, DNA binding, and ability to induce apoptosis

    Sørensen, B. H., Werth, P., Lambert, Ian Henry & Bednarski, P. J., 2018, In: Metallomics. 10, 2, p. 323-336 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag

    Visone, V., Han, W., Perugino, G., del Monaco, G., She, Q., Rossi, M., Valenti, A. & Ciaramella, M., 3 Oct 2017, In: PLoS ONE. 12, 10, 19 p., e0185791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    In vivo genetic screening for therapeutic targets for type 2 diabetes: Modeling insulin resistance in Drosophila

    Jørgensen, A. F., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    In vivo imaging of coral tissue and skeleton with optical coherence tomography

    Wangpraseurt, D., Wentzel, C., Jacques, S. J., Wagner, M. & Kühl, Michael, 2017, In: Journal of the Royal Society. Interface. 14, 128, 12 p., 20161003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    In vivo microscale measurements of light and photosynthesis during coral bleaching: evidence for the optical feedback loop?

    Wangpraseurt, D., Holm, J. B., Larkum, A. W. D., Pernice, M., Ralph, P. J., Sugget, D. J. & Kühl, Michael, 24 Jan 2017, In: Frontiers in Microbiology. 8, 12 p., 59.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    In vivo, genome-wide profiling of endogenously tagged chromatin-binding proteins with spatial and temporal resolution using NanoDam in Drosophila

    Tang, J. L. Y., Krautz, Robert, Llorà-Batlle, O., Hakes, A. E., Fox, P. M. & Brand, A. H., 2022, In: STAR Protocols. 3, 4, 30 p., 101788.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    In-vivo imaging of O2 dynamics on coral surfaces spray-painted with sensor nanoparticles

    Koren, K., Jakobsen, S. L. & Kühl, Michael, 2016, In: Sensors and Actuators B: Chemical. 237, p. 1095–1101 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Katodinium glaucum (Dinophyceae) revisited: proposal of new genus, family and order, based on ultrastructure and phylogeny

    Boutrup, P. V., Moestrup, Øjvind, Tillmann, U. & Daugbjerg, Niels, 2016, In: Phycologia. 55, 2, p. 147-164 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Lactobacillus rhamnosus GG Genomic and Phenotypic Stability in an Industrial Production Process

    Strickertsson, Marianne Stage, Wichmann, A., Jørgensen, M., Vera-Jimenéz, N. I., Wielje, M., Nielsen, Dennis Sandris, Sandelin, Albin Gustav, Chen, Y. & Baker, A., 2020, In: Applied and Environmental Microbiology. 86, 6, 15 p., e02780-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Legionella maioricensis sp. nov., a new species isolated from the hot water distribution systems of a hospital and a shopping center during routine sampling

    Crespi, S., Drašar, V., Salvà-Serra, F., Jaén-Luchoro, D., Piñeiro-Iglesias, B., Lindemann, P. C., Aliaga-Lozano, F., Fernandez Juarez, Victor, Coll-García, G., Moore, E. R. B. & Bennasar-Figueras, A., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 1, 12 p., 005686.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Litholepas klausreschi gen. et sp. nov., a new neolepadine barnacle (Cirripedia, Thoracica) on a sponge from the Upper Jurassic lithographic limestones of southern Germany

    Nagler, C., Haug, J. T., Glenner, Henrik & Buckeridge, J., 1 Jan 2017, In: Neues Jahrbuch fur Geologie und Palaontologie - Abhandlungen. 284, 1, p. 29-42 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Lobaria pulmonaria (L.) Hoffm. in the southwestern Baltic – Kattegat area

    Schiefelbein, U., Arnfred, T., Dolnik, C., Neumann, P., Ossowska, E., Poulsen, R., Søchting, Ulrik & Thell, A., 2021, In: Folia Cryptogamica Estonica. 58, p. 183-197

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Mammuthus sp. (Early and Middle Pleistocene Mammoths)

    Chrzanová Pecnerová, Patrícia, Díez-del-Molino, D., van der Valk, T., Dehasque, M., Götherström, A. & Dalén, L., 2021, In: Trends in Genetics. 37, 7, p. 682-683 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  26. Published

    Marchantiana pyramus, M. ramulicola and Austroplaca thisbe (Teloschistaceae, lichenized Ascomycota) - three new twig lichens from southern Patagonia

    Søchting, Ulrik, Sancho, L. G. & Arup, U., 2023, In: Lichenologist. 55, 5, p. 377-387 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Melobesia subplana Rosenvinge (Corallinales, Rhodophyta) is conspecific with Pneophyllum fragile Kützing

    Wegeberg, S., 2001, In: Nordic Journal of Botany. 21, p. 329-336

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Mesodinium rubrum: the symbiosis that wasn’t

    Johnson, M. D., Lasek-Nesselquist , E., Moeller, H. V., Altenburger, A., Lundholm, Nina, Kim, M., Drumm, Kirstine, Moestrup, Øjvind & Hansen, Per Juel, 14 Feb 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 7, p. E1040-E1042 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  29. Published

    Micromeria browiczii (Labiatae), an unusual new species from Zakinthos (Ionian islands, Greece)

    Tan, K. & Zielinski, J., 2001, In: Polish Botanical Journal. 46(1), p. 31-33

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Micromeria zarkosii (Lamiaceae), an unusual new species from Naxos (central Kiklades, Greece)

    Tan, K., Biel, B. & Zieliński, J., 2020, In: Nordic Journal of Botany. 38, 11, 4 p., e02975.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Modiolus cimbricus sp. nov. (Bivalvia: Mytilidae) endemic in the Kattegat-Skagerrak

    Ockelmann, K. W. & Cedhagen, T., 2019, In: European Journal of Taxonomy. 556, p. 1-13

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis

    Herp, S., Brugiroux, S., Garzetti, D., Ring, D., Jochum, L. M., Beutler, M., Eberl, C., Hussain, S., Walter, S., Gerlach, R. G., Ruscheweyh, H. J., Huson, D., Selling, M. E., Slack, E., Hanson, B., Loy, A., Baines, J. F., Rausch, P., Basic, M., Bleich, A. & 2 others, Berry, D. & Stecher, B., 2019, In: Cell Host & Microbe. 25, 5, p. 681-694, e1-e8

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Mycena species can be opportunist-generalist plant root invaders

    Harder, Christoffer Bugge, Hesling, E., Botnen, S. S., Lorberau, K. E., Dima, B., von Bonsdorff-Salminen, T., Niskanen, T., Jarvis, S. G., Ouimette, A., Hester, A., Hobbie, E. A., Taylor, A. F. S. & Kauserud, H., 2023, In: Environmental Microbiology. 25, 10, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis

    Benndorf, R., Schwitalla, J. W., Martin, K., De Beer, Z. W., Vollmers, J., Kaster, A., Poulsen, Michael & Beemelmanns, C., 2020, In: International Journal of Systematic and Evolutionary Microbiology. 70, 10, p. 5226-5234 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Obscuroplaca gen. nov. – a replacement name for Phaeoplaca; Teloschistaceae (lichenized Ascomycota) from the Galapagos Islands

    Bungartz, F., Søchting, Ulrik & Arup, U., 2021, In: Plant and Fungal Systematics. 66, 2, p. 240-241 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  36. Published

    P. aeruginosa flow-cell biofilms are enhanced by repeated phage treatments but can be eradicated by phage-ciprofloxacin combination: —monitoring the phage–P. aeruginosa biofilms interactions

    Henriksen, K., Rørbo, N., Rybtke, Morten Levin, Martinet, M. G., Tolker-Nielsen, Tim, Høiby, Niels, Middelboe, Mathias & Ciofu, Oana, 2019, In: Pathogens and Disease. 77, 2, 11 p., ftz011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    POPDC1S201F causes muscular dystrophy and arrhythmia by affecting protein trafficking

    Schindler, R. F. R., Scotton, C., Zhang, J., Passarelli, C., Ortiz-Bonnin, B., Simrick, S., Schwerte, T., Poon, K-L., Fang, M., Rinne, S., Froese, A., Nikolaev, V. O., Grunert, C., Mueller, T., Tasca, G., Sarathchandra, P., Drago, F., Dallapiccola, B., Rapezzi, C., Arbustini, E. & 14 others, Di Raimo, F. R., Neri, M., Selvatici, R., Gualandi, F., Fattori, F., Pietrangelo, A., Li, W., Jiang, H., Xu, X., Bertini, E., Becher, N., Wang, J., Brand, T. & Ferlini, A., 2016, In: Journal of Clinical Investigation. 126, 1, p. 239-253 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    PSX, Protein-Solvent Exchange: software for calculation of deuterium-exchange effects in small-angle neutron scattering measurements from protein coordinates

    Pedersen, Martin Cramer, Wang, Yong, Tidemand, Frederik Grønbæk, Martel, A., Lindorff-Larsen, Kresten & Arleth, Lise, 2019, In: Journal of Applied Crystallography. 52, 6, p. 1427-1436 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Papio spp. Colon microbiome and its link to obesity in pregnancy

    Li, Xuan Ji, Rensing, C., Taylor, W. L., Costelle, C., Brejnrod, A. D., Ferry, R. J. ,. J., Higgins, P. B., Folli, F., Kottapalli, K. R., Hubbard, G. B., Dick, E. J. ,. J., Yooseph, S., Nelson, K. E. & Schlabritz-Loutsevitch, N., Dec 2018, In: Journal of Medical Primatology. 47, 6, p. 393-401

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Parvilucifera infectans Norén et Moestrup gen. et sp. nov. (Perkinsozoa phylum nov.): A parasitic flagellate capable of killing toxic microaalgae

    Norén, F., Moestrup, Øjvind & Rehnstam-Holm, A., 1999, In: European Journal of Protistology. 35, p. 233-254

    Research output: Contribution to journal › Journal article › Research

  41. Published

    Polygonum melihae sp. nov. (Polygonaceae) from inner west Anatolia, Turkey

    Gemici, Y. & Tan, K., 2014, In: Nordic Journal of Botany. 32, 5, p. 540-542 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Porpidia navarina, a new endemic species from Isla Navarino (southern Tierra del Fuego, Chile)

    Ruprecht, U., Søchting, Ulrik & Türk, R., 2016, In: Herzogia. 29, 2, p. 596-609 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Prevotella-to-Bacteroides ratio predicts body weight and fat loss success on 24-week diets varying in macronutrient composition and dietary fiber: results from a post-hoc analysis

    Hjorth, Mads Fiil, Blædel, T., Bendtsen, L. Q., Lorenzen, J. K., Holm, J. B., Kiilerich, P., Roager, Henrik Munch, Kristiansen, Karsten, Larsen, L. H. & Astrup, A., 1 Jan 2019, In: International Journal of Obesity. 43, 1, p. 149-157

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Prymnesium parvum revisited: relationship between allelopathy, ichthyotoxicity, and chemical profiles in 5 strains

    Blossom, H. E., Rasmussen, S. A., Andersen, N. G., Larsen, T. O., Nielsen, K. F. & Hansen, Per Juel, 2014, In: Aquatic Toxicology. 157, p. 159-166 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Pseudomonas aeruginosa tolerance to tobramycin, hydrogen peroxide and polymorphonuclear leukocytes is quorum-sensing dependent

    Bjarnsholt, Thomas, Jensen, Peter Østrup, Burmølle, Mette, Hentzer, M., Haagensen, J. A. J., Hougen, H. P., Calum, H., Madsen, K. G., Moser, Claus Ernst, Molin, S., Høiby, Niels & Givskov, Michael, Feb 2005, In: Microbiology. 151, Pt 2, p. 373-83 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Pseudomonas aeruginosa aggregate formation in an alginate bead model system exhibits In Vivo-like characteristics

    Sønderholm, M., Kragh, K. N., Koren, K., Jakobsen, Tim Holm, Darch, S., Alhede, M., Jensen, Peter Østrup, Whiteley, M., Kühl, Michael & Bjarnsholt, Thomas, May 2017, In: Applied and Environmental Microbiology. 83, 9, 15 p., e00113-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Pycnoscelus surinamensis cockroach gut microbiota respond consistently to a fungal diet without mirroring those of fungus-farming termites

    Richards, C., Otani, S., Mikaelyan, A. & Poulsen, Michael, 3 Oct 2017, In: PLoS ONE. 12, 10, 19 p., e0185745.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Ramonia chrysophaea new to Denmark

    Larsen, R. S. & Søchting, Ulrik, 2003, In: Graphis Scripta. 14, p. 7-9

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Rhizopogon spore bank communities within and among California pine forests

    Kjøller, Rasmus & Bruns, T. D., 2003, In: Mycologia. 95, p. 603-613

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Rhynchostegium megapolitanum (Web. et Mohr) B.S.G.-A rare bryophyte in dune ecosystems of Zealand, Denmark

    Johnsen, I., 2014, In: American Journal of Plant Sciences. 5, 9, p. 1378-1383 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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