- 2022
- Published
Requirement of a deeply conserved ARGONAUTE phospho-cluster for target- mediated microRNA degradation in plants
Guo, F., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Reversible mutations in gliding motility and virulence genes: A flexible and efficient phage defence mechanism in Flavobacterium psychrophilum
Jørgensen, J., Sundell, K., Castillo, D., Dramshøj, L. S., Jørgensen, N. B., Madsen, S. B., Landor, L., Wiklund, T., Donati, V. L., Madsen, L., Dalsgaard, I. & Middelboe, Mathias, 2022, In: Environmental Microbiology. 24, 10, p. 4915-4930Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Role of ATP and P2X7 receptor in pancreatic cancer
Magni, Lara, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 151 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Roots in armour: Protective traits of the barrier to radial oxygen loss
Peralta Ogorek, Lucas León, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 193 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
SCAI promotes error-free repair of DNA interstrand crosslinks via the Fanconi anemia pathway
Schubert, Lisa, Hendriks, Ivo Alexander, Hertz, Emil Peter Thrane, Wu, Wei, Sellés Baiget, Selene, Hoffmann, Saskia, Bagge, Keerthana Stine Viswalingam, Gallina, I., Pentakota, S., Benedict, Bente, Johansen, Joachim, Apelt, K., Luijsterburg, M. S., Rasmussen, Simon, Lisby, Michael, Liu, Ying, Nielsen, Michael Lund, Mailand, Niels & Duxin, Julien, 2022, In: EMBO Reports. 23, 4, 20 p., e53639.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Saliva: a new opportunity for fluid biopsy
Huang, Z., Yang, X., Huang, Y., Tang, Z., Chen, Y., Liu, H., Huang, M., Qing, L., Li, L., Wang, Q., Jie, Zhuye, Jin, X. & Jia, B., 2022, In: Clinical Chemistry and Laboratory Medicine. 61, 1, 29 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
SatuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications
Gilis, J., Vitting-Seerup, K., Van den Berge, K. & Clement, L., 2022, In: F1000Research. 10, 43 p., 374.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Scaling of maneuvering performance in baleen whales: larger whales outperform expectations
Segre, P. S., Gough, W. T., Roualdes, E. A., Cade, D. E., Czapanskiy, M. F., Fahlbusch, J., Kahane-Rapport, S. R., Oestreich, W. K., Bejder, L., Bierlich, K. C., Burrows, J. A., Calambokidis, J., Chenoweth, E. M., di Clemente, J., Durban, J. W., Fearnbach, H., Fish, F. E., Friedlaender, A. S., Hegelund, P., Johnston, D. W. & 13 others, , 2022, In: Journal of Experimental Biology. 225, 5, 15 p., jeb243224.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Scientists' warning of threats to mountains
Schmeller, D. S., Urbach, D., Bates, K., Catalan, J., Cogălniceanu, D., Fisher, M. C., Friesen, J., Füreder, L., Gaube, V., Haver, M., Jacobsen, D., Le Roux, G., Lin, Y-P., Loyau, A., Machate, O., Mayer, A., Palomo, I., Plutzar, C., Sentenac, H., Sommaruga, R. & 2 others, , 2022, In: The Science of the Total Environment. 853, 12 p., 158611.Research output: Contribution to journal › Review › Research › peer-review
- Published
Screening for Highly Transduced Genes in Staphylococcus aureus Revealed Both Lateral and Specialized Transduction
Bowring, Janine Zara, Su, Y., Alsaadi, Ahlam Musaibeh M, Svenningsen, Sine Lo, Parkhill, J. & Ingmer, Hanne, 2022, In: Microbiology Spectrum. 10, 1, e02423-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Scrub encroachment promotes biodiversity in temperate European wetlands under eutrophic conditions
Brunbjerg, A. K., Fløjgaard, C., Frøslev, Tobias Guldberg, Andersen, D. K., Bruun, Hans Henrik, Dalby, L., Goldberg, I., Lehmann, L. J., Moeslund, J. E. & Ejrnæs, R., 2022, In: Ecology and Evolution. 12, 11, 19 p., e9445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Semi-automated assembly of high-quality diploid human reference genomes
Jarvis, E. D., Formenti, G., Rhie, A., Guarracino, A., Yang, C., Wood, J., Tracey, A., Thibaud-Nissen, F., Vollger, M. R., Porubsky, D., Cheng, H., Asri, M., Logsdon, G. A., Carnevali, P., Chaisson, M. J. P., Chin, C. S., Cody, S., Collins, J., Ebert, P., Escalona, M. & 31 others, , 2022, In: Nature. 611, 7936, 34 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequencing introduced false positive rare taxa lead to biased microbial community diversity, assembly, and interaction interpretation in amplicon studies
Jia, Y., Zhao, S., Guo, W., Peng, L., Zhao, F., Wang, L., Fan, G., Zhu, Y., Xu, D., Liu, G., Wang, R., Fang, X., Zhang, H., Kristiansen, Karsten, Zhang, W. & Chen, J., 2022, In: Environmental Microbiomes. 17, 18 p., 43.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sex in the wild: repeated observations of planktonic ciliate conjugation from field samples
Romano, F., Symiakaki, K. & Pitta, P., 2022, In: Journal of Plankton Research. 44, 2, p. 333-336 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sialylation of N-glycans affects the lipid secretion governed by specialized secretory lysosomal organelles through an effect on the V-ATPase
Khoder-Agha, F., Song, Ming, Borre, M. T., Marinova, I. N., Ye, Z., Pedersen, Stine Helene Falsig, Dabelsteen, Sally & Wandall, Hans H., 2022, In: Glycobiology. 32, 11, p. 1012-1013 2 p., P103.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Sigalionidae, Pisioninae Ehlers, 1901
Gonzalez, B. C., Worsaae, Katrine & Eibye-Jacobsen, Danny, 2022, Pleistoannelida, Errantia II. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, p. 139-151 13 p. (Handbook of Zoology, Vol. 4).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
SignalP 6.0 predicts all five types of signal peptides using protein language models
Teufel, Felix Georg, Almagro Armenteros, J. J., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, Konstantinos, Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 2022, In: Nature Biotechnology. 40, p. 1023-1025Research output: Contribution to journal › Comment/debate › Research
- Published
Simple attributes predict the value of plants as hosts to fungal and arthropod communities
Bruun, Hans Henrik, Brunbjerg, A. K., Dalby, L., Fløjgaard, C., Frøslev, Tobias Guldberg, Haarder, S., Heilmann-Clausen, Jacob, Høye, T. T., Læssøe, Thomas & Ejrnæs, R., 2022, In: Oikos. 2022, 4, 11 p., e08823.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems
Ahmerkamp, S., Jalaluddin, F. M., Cui, Y., Brumley, D. R., Pacherres, Cesar, Berg, J. S., Stocker, R., Kuypers, M. M. M., Koren, K. & Behrendt, L., 2022, In: Cell Reports Methods. 2, 5, 18 p., 100216.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma
Ou, Z., Lin, S., Qiu, J., Ding, W., Ren, P., Chen, D., Wang, J., Tong, Y., Wu, D., Chen, A., Deng, Y., Cheng, M., Peng, T., Lu, H., Yang, H., Wang, J., Jin, X., Ma, D., Xu, X., Wang, Y. & 2 others, , 2022, In: Advanced Science. 9, 29, 20 p., 2203040.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell RNA sequencing technologies and applications: A brief overview
Jovic, D., Liang, Xue, Zeng, H., Lin, L., Xu, F. & Luo, Y., 2022, In: Clinical and Translational Medicine. 12, 3, 20 p., e694.Research output: Contribution to journal › Review › Research › peer-review
- Published
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration
Wei, X., Fu, S., Li, H., Liu, Y., Wang, S., Feng, W., Yang, Y., Liu, X., Zeng, Y-Y., Cheng, M., Lai, Y., Qiu, X., Wu, L., Zhang, N., Jiang, Y., Xu, J., Su, X., Peng, C., Han, L., Lou, W. P-K. & 16 others, , 2022, In: Science. 377, 6610, 10 p., eabp9444.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell transcriptomic landscape of the sheep rumen provides insights into physiological programming development and adaptation of digestive strategies
Yuan, Y., Sun, D., Qin, T., Mao, S., Zhu, W., Yin, Y., Huang, J., Heller, Rasmus, Li, Z., Liu, J. & Qiu, Q., 2022, In: Zoological research. 43, 4, p. 634-647 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sinking Trichodesmium fixes nitrogen in the dark ocean
Benavides, M., Bonnet, S., Le Moigne, F. A. C., Armin, G., Inomura, K., Hallstrøm, S., Riemann, Lasse, Berman-Frank, I., Poletti, E., Garel, M., Grosso, O., Leblanc, K., Guigue, C., Tedetti, M. & Dupouy, C., 2022, In: The ISME Journal. 16, 10, p. 2398-2405 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Site-specific responses of fungal and bacterial abundances to experimental warming in litter and soil across Arctic and alpine tundra
Jeanbille, M., Clemmensen, K., Juhanson, J., Michelsen, Anders, Cooper, E. J., Henry, G. H. R., Hofgaard, A., Hollister, R. D., Jónsdóttir, I. S., Klanderud, K., Tolvanen, A. & Hallin, S., 2022, In: Arctic Science. 8, 3, p. 992-1005 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Skeletal muscle adaptations to exercise are not influenced by metformin treatment in humans: secondary analyses of 2 randomised, clinical trials
Pilmark, N. S., Oberholzer, L., Halling, Jens Frey, Kristensen, Jonas Møller, Bønding, C. P., Elkjær, I., Lyngbæk, M., Elster, G., Siebenmann, C., Holm, N. F., Birk, Jesper Bratz, Larsen, E. L., Meinild-Lundby, A., Wojtaszewski, Jørgen F P, Pilegaard, Henriette, Poulsen, H., Pedersen, Bente Klarlund, Hansen, K. B. & Karstoft, Kristian, 2022, In: Applied Physiology, Nutrition and Metabolism. 47, 3, p. 309-320 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Small Hydropower — Small Ecological Footprint? A Multi-Annual Environmental Impact Analysis Using Aquatic Macroinvertebrates as Bioindicators: Part 1: Effects on Community Structure
Scotti, A., Jacobsen, Dean, Ștefan, V., Tappeiner, U. & Bottarin, R., 2022, In: Frontiers in Environmental Science. 10, 13 p., 902603.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Small hydropower — Small ecological footprint? A multi-annual environmental impact analysis using aquatic macroinvertebrates as bioindicators: Part 2: Effects on functional diversity
Scotti, A., Jacobsen, Dean & Bottarin, R., 2022, In: Frontiers in Environmental Science. 10, 14 p., 904547.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Smooth muscle ATP-sensitive potassium channels mediate migraine-relevant hypersensitivity in mouse models
Christensen, S. L., Rasmussen, Rikke Holm, Cour, S. L., Ernstsen, C., Hansen, Thomas Folkmann, Kogelman, L. J. A., Lauritzen, S. P., Guzaite, G., Styrishave, Bjarne, Janfelt, Christian, Christensen, Søren Tvorup, Aziz, Q., Tinker, A., Jansen-Olesen, I., Olesen, Jes & Kristensen, D. M., 2022, In: Cephalalgia. 42, 2, p. 93-107Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Social environment affects sensory gene expression in ant larvae
Pulliainen, U., Morandin, C., Bos, N., Sundström, L. & Schultner, E., 2022, In: Insect Molecular Biology. 31, 1, p. 1-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sodium, Glucose and Dysregulated Glucagon Secretion: The Potential of Sodium Glucose Transporters
Armour, Sarah Louise, Früh, Alexander Erwin & Knudsen, Jakob Grunnet, 2022, In: Frontiers in Pharmacology. 13, 6 p., 837664.Research output: Contribution to journal › Review › Research › peer-review
- Published
Soil moisture regulates warming responses of autumn photosynthetic transition dates in subtropical forests
Fu, Y. H., Li, X., Chen, S., Wu, Z., Su, J., Li, X., Li, S., Zhang, J., Tang, Jing & Xiao, J., 2022, In: Global Change Biology. 28, 16, p. 4935-4946 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil texture is a stronger driver of the maize rhizosphere microbiome and extracellular enzyme activities than soil depth or the presence of root hairs
Yim, B., Ibrahim, Z., Rüger, L., Ganther, M., Maccario, Lorrie, Sørensen, Søren Johannes, Heintz-Buschart, A., Tarkka, M. T., Vetterlein, D., Bonkowski, M., Blagodatskaya, E. & Smalla, K., 2022, In: Plant and Soil. 478, 1-2, p. 229-251 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil volatile organic compound emissions in response to soil warming and nitrogen deposition
Romero-Olivares, A. L., Davie-Martin, Cleo Lisa, Kramshøj, M., Rinnan, Riikka & Frey, S. D., 2022, In: Elementa. 10, 1, 11 p., 65.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Solanimycin: Biosynthesis and Distribution of a New Antifungal Antibiotic Regulated by Two Quorum-Sensing Systems
Matilla, M. A., Monson, R. E., Murphy, A., Schicketanz, Muriel Leandra, Rawlinson, A., Duncan, C., Mata, J., Leeper, F. & Salmond, G. P. C., 2022, In: mBio. 13, 6, 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Somatic structural variant formation is guided by and influences genome architecture
Sidiropoulos, N., Mardin, B. R., Rodriguez Gonzalez, Francisco G, Bochkov, I. D., Garg, S., Stuetz, A. M., Korbel, J. O., Aiden, E. L. & Weischenfeldt, Joachim Lütken, 2022, In: Genome Research. 32, 4, p. 643-655Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Somatostatin venom analogs evolved by fish-hunting cone snails: From prey capture behavior to identifying drug leads
Ramiro, Iris Bea L. , Bjørn-Yoshimoto, Walden, Imperial, J. S., Gajewiak, J., Salcedo, P. F., Watkins, M., Taylor, D., Resager, W., Ueberheide, B., Bräuner, Hans, Whitby, F. G., Hill, C. P., Martin, L. F., Patwardhan, A., Concepcion, G. P., Olivera, B. M. & Safavi-Hemami, H., 2022, In: Science Advances. 8, 12, 16 p., eabk1410.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial and Temporal Patterns of Genetic Diversity and Structure in Danish Populations of the Alcon Blue Butterfly Phengaris alcon (Denis & Schiffermüller)
Boe, A. M. B., Simonsen, T. J., Colding-Jørgensen, Camilla Tvede, Folman, P. H., Jensen, T. T., Spencer, K. J., Thomsen, P. F. & Nash, David Richard, 2022, In: Diversity. 14, 12, 1098.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial genetic patterns in African wild dogs reveal signs of effective dispersal across southern Africa
Tensen, L., Jansen van Vuuren, B., Groom, R., Bertola, Laura, de Iongh, H., Rasmussen, G., Du Plessis, C., Davies-Mostert, H., van der Merwe, D., Fabiano, E., Lages, F., Rocha, F., Monterroso, P. & Godinho, R., 2022, In: Frontiers in Ecology and Evolution. 10, 12 p., 992389.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal influences of climate and humans on muskox range dynamics over multiple millennia
Canteri, Elisabetta, Brown, S. C., Schmidt, N. M., Heller, Rasmus, Nogues, David Bravo & Fordham, D. A., 2022, In: Global Change Biology. 28, 22, p. 6602-6617 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis
Liu, C., Li, R., Li, Y., Lin, X., Zhao, K., Liu, Q., Wang, S., Yang, X., Shi, X., Ma, Y., Pei, C., Wang, H., Bao, W., Hui, J., Yang, T., Xu, Z., Lai, T., Berberoglu, M. A., Sahu, S. K., Esteban, M. A. & 8 others, , 2022, In: Developmental Cell. 57, 10, p. 1284-1298.e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays
Chen, A., Liao, S., Cheng, M., Ma, K., Wu, L., Lai, Y., Qiu, X., Yang, J., Xu, J., Hao, S., Wang, X., Lu, H., Chen, X., Liu, X., Huang, X., Li, Z., Hong, Y., Jiang, Y., Peng, J., Liu, S. & 49 others, , 2022, In: Cell. 185, 10, p. 1777-1792.e21Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Species-specific traits mediate avian demographic responses under past climate change
Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 p.Research output: Working paper › Preprint › Research
- Published
Specific gut bacterial responses to natural diets of tropical birds
Bodawatta, Kasun Harshana, Klečková, I., Klečka, J., Pužejová, K., Koane, B., Poulsen, Michael, Jønsson, Knud Andreas & Sam, K., 2022, In: Scientific Reports. 12, 15 p., 713.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sperm Storage Costs Determine Survival and Immunocompetence in Newly Mated Queens of the Leaf-Cutting Ant Atta colombica
Baer-Imhoof, B., Beckers, Susanne den Boer, Boomsma, Jacobus J. & Baer, B., 2022, In: Frontiers in Ecology and Evolution. 9, 10 p., 759183.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Standards recommendations for the Earth BioGenome Project
Lawniczak, M. K. N., Durbin, R., Flicek, P., Lindblad-Toh, K., Wei, X., Archibald, J. M., Baker, W. J., Belov, K., Blaxter, M. L., Bonet, T. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Crawford, A. J., Davey, R. P., Palma, F. D., Fang, Q., Haerty, W., Hall, N., Hoff, K. J. & 25 others, , 2022, In: PNAS. 119, 4, 8 p., e2115639118.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Strategies for Heterologous Expression, Synthesis, and Purification of Animal Venom Toxins
Rivera-de-Torre, E., Rimbault, C., Jenkins, T. P., Sørensen, C. V., Damsbo, A., Saez, N. J., Duhoo, Y., Hackney, Celeste Menuet, Ellgaard, Lars & Laustsen, A. H., 2022, In: Frontiers in Bioengineering and Biotechnology. 9, 26 p., 811905.Research output: Contribution to journal › Review › Research › peer-review
- Published
Stream restoration and ecosystem functioning in lowland streams
Baattrup-Pedersen, A., Alnoe, A. B., Rasmussen, J. J., Levi, P. S., Friberg, N. & Riis, T., 2022, In: Ecological Engineering. 184, 9 p., 106782.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stream-Lake Connectivity Is an Important Control of Fluvial CO2 Concentrations and Emissions in Catchments
Sand-Jensen, Kaj, Riis, T., Kjær, Johan Emil & Martinsen, K. T., 2022, In: Earth and Space Science. 9, 12, 12 p., e2022EA002664.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Strong isoprene emission response to temperature in tundra vegetation
Seco, Roger, Holst, T., Davie-Martin, Cleo Lisa, Simin, Tihomir, Guenther, A., Pirk, N., Rinne, J. & Rinnan, Riikka, 2022, In: PNAS. 119, 38, 7 p., e2118014119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural basis of ion uptake in copper-transporting P1B-type ATPases
Salustros, N., Gronberg, C., Abeyrathna, N. S., Lyu, Pin, Oradd, F., Wang, Kaituo, Andersson, M., Meloni, G. & Gourdon, Pontus Emanuel, 2022, In: Nature Communications. 13, 1, 11 p., 5121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response
Bisiak, F., Chrenková, A., Zhang, S., Pedersen, J. N., Otzen, D. E., ZHANG, YONG & Brodersen, D. E., 2022, In: Journal of Biological Chemistry. 298, 7, 16 p., 102142.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structure and functional analysis of PIB-type ATPases
Lyu, Pin, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 281 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Structure, dynamics, and stability of the globular domain of human linker histone H1.0 and the role of positive charges
Martinsen, J. H., Saar, Daniel, Fernandes, Catarina, Schuler, B., Bugge, K. & Kragelund, Birthe Brandt, 2022, In: Protein Science. 31, 4, p. 918-932 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Studies on how protein missense mutations affect protein stability and degradation
Grønbæk-Thygesen, Martin, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 203 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Successful treatment of psoriasis with adalimumab induced no changes in the gut microbiota
Todberg, T., Egeberg, Alexander, Zachariae, Claus, Sørensen, N., Pedersen, Oluf Borbye & Skov, Lone, 2022, In: Journal of the European Academy of Dermatology and Venereology. 36, 6, p. e464-e467 4 p.Research output: Contribution to journal › Comment/debate › Research
- Published
Survival and Genome Diversity of Vibrio parahaemolyticus Isolated from Edible Aquatic Animals
Xu, D., Peng, Xu, Xie, L. & Chen, L., 2022, In: Diversity. 14, 5, 23 p., 350.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synergy between Mecillinam and Ceftazidime/Avibactam or Avibactam against Multi-Drug-Resistant Carbapenemase-Producing Escherichia coli and Klebsiella pneumoniae
List, K. K., Kolpen, Mette, Kragh, K. N., Charbon, Godefroid, Radmer, S., Hansen, F., Løbner-Olesen, Anders, Frimodt-Møller, N. & Hertz, F. B., 2022, In: Antibiotics. 11, 10, 13 p., 1280.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematic position of the Clicking Frog (Kassinula Laurent, 1940), the problem of chimeric sequences and the revised classification of the family Hyperoliidae
Nečas, T., Kielgast, J., Nagy, Z. T., Kusamba Chifundera, Z. & Gvoždík, V., 2022, In: Molecular Phylogenetics and Evolution. 174, 11 p., 107514.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Taking metagenomics under the wings
Chua, Physilia & Rasmussen, Jacob Agerbo, 2022, In: Nature Reviews Microbiology. 20, 8, p. 447 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Targeted removal of mitochondrial DNA from mouse and human extrachromosomal circular DNA with CRISPR-Cas9
Feng, Weijia, Arrey Tané, Gerard, Zole, Egija, Iv, W., Liang, Xue, Han, Peng, Mohiyuddin, M., Pilegaard, Henriette & Regenberg, Birgitte, 2022, In: Computational and Structural Biotechnology Journal. 20, p. 3059-3067 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Telomeric C-circles localize at nuclear pore complexes in Saccharomyces cerevisiae
Aguilera, P., Dubarry, M., Hardy, J., Lisby, Michael, Simon, M. & Géli, V., 2022, In: EMBO Journal. 41, 6, 14 p., e108736.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temperature Effects on Leaf and Epiphyte Photosynthesis, Bicarbonate Use and Diel O2 Budgets of the Seagrass Zostera marina L.
Hansen, A. B., Pedersen, A. S., Kühl, Michael & Brodersen, Kasper Elgetti, 2022, In: Frontiers in Marine Science. 9, 13 p., 822485.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temperature and spatial connectivity drive patterns in freshwater macroinvertebrate diversity across the Arctic
Lento, J., Culp, J. M., Levenstein, B., Aroviita, J., Baturina, M. A., Bogan, D., Brittain, J. E., Chin, K., Christoffersen, K. S., Docherty, C., Friberg, N., Ingimarsson, F., Jacobsen, D., Lau, D. C. P., Loskutova, O. A., Milner, A., Mykrä, H., Novichkova, A. A., Ólafsson, J. S., Schartau, A. K. & 2 others, , 2022, In: Freshwater Biology. 67, 1, p. 159-175 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Cycas genome and the early evolution of seed plants
Liu, Y., Wang, S., Li, L., Yang, T., Dong, S., Wei, T., Wu, S., Liu, Y., Gong, Y., Feng, X., Ma, J., Chang, G., Huang, J., Yang, Y., Wang, H., Liu, M., Xu, Y., Liang, H., Yu, J., Cai, Y. & 45 others, , 2022, In: Nature Plants. 8, 4, p. 389-401 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Australian dingo is an early offshoot of modern breed dogs
Field, M. A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B. D., Skvortsova, K., Edwards, R. J., Keilwagen, J., Cochran, B. J., Manandhar, B., Bustamante, S., Rasmussen, J. A., Melvin, R. G., Chernoff, B., Omer, A., Colaric, Z., Chan, E. K. F., Minoche, A. E., Smith, T. P. L., Gilbert, M. T. P. & 5 others, , 2022, In: Science Advances. 8, 16, 14 p., eabm5944.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Behaviour of Short Linear Motifs in the DREB2A Transcription Factor and the Effect of Molecular Context
Theisen, Frederik Friis, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 160 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The Clinical Application of Next Generation Sequencing Technology in Newborn Screening and Pharmacogenetics
Jian, M., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 131 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The Earth BioGenome Project 2020: Starting the clock
Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, , 2022, In: PNAS. 119, 4, 7 p., e2115635118.Research output: Contribution to journal › Review › Research › peer-review
- Published
The Efficacy of Faecal Microbiota Transplant and Rectal Bacteriotherapy in Patients with Recurrent Clostridioides difficile Infection: A Retrospective Cohort Study.
Svensson, C. K., Cold, F., Ribberholt, I., Zangenberg, M., Mirsepasi-Lauridsen, H. C., Petersen, Andreas Munk & Helms, Morten, 2022, In: Cells. 11, 20, 12 p., 3272.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The FASTQ+ format and PISA
Shi, Quan, Liu, S., Kristiansen, Karsten & Liu, L., 2022, In: Bioinformatics. 38, 19, p. 4639-4642 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The First Genome of the Balearic Shearwater (Puffinus mauretanicus) Provides a Valuable Resource for Conservation Genomics and Sheds Light on Adaptation to a Pelagic lifestyle
Cuevas-Caballé, C., Ferrer Obiol, J., Vizueta Moraga, Joel, Genovart, M., Gonzalez-Solís, J., Riutort, M. & Rozas, J., 2022, In: Genome Biology and Evolution. 14, 5, 14 p., evac067.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Afgan, E., Nekrutenko, A., Grüning, B. A., Blankenberg, D., Goecks, J., Schatz, M. C., Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., Desanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B. A. & 85 others, , 2022, In: Nucleic Acids Research. 50, W1, p. W345-W351 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Gut Microbiota of Healthy and Flavobacterium psychrophilum-Infected Rainbow Trout Fry Is Shaped by Antibiotics and Phage Therapies
Donati, V. L., Madsen, L., Middelboe, Mathias, Strube, M. L. & Dalsgaard, I., 2022, In: Frontiers in Microbiology. 13, 21 p., 771296.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates
Bergeron, Lucie Adrienne, Besenbacher, S., Turner, T. N., Versoza, C. J., Wang, R. J., Price, A. L., Armstrong, E., Riera, M., Carlson, J., Chen, Hwei-Yen, Hahn, M. W., Harris, K., Kleppe, A. S., López-Nandam, E. H., Moorjani, P., Pfeifer, S. P., Tiley, G. P., Yoder, A. D., KU, thw266 & Schierup, M. H., 2022, In: eLife. 11, 28 p., e73577.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Native Bees of Lolland (Denmark) Revisited after 100 Years: The Demise of the Specialists
Rasmussen, C., Kjær Sydenham, M. A., Schmidt, H. T. & Madsen, Henning Bang, 2022, In: Insects. 13, 2, 17 p., 153.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Pyramiding of Three Key Root Traits Aid Breeding of Flood-Tolerant Rice
Chen, L., Zhu, T., Peralta Ogorek, Lucas León, Wang, Y., Sauter, M. & Pedersen, Ole, 2022, In: Plants. 11, 15, 10 p., 2033.Research output: Contribution to journal › Review › Research › peer-review
- Published
The TRPC1 Channel Forms a PI3K/CaM Complex and Regulates Pancreatic Ductal Adenocarcinoma Cell Proliferation in a Ca2+-Independent Manner
Schnipper, J., Kouba, S., Hague, F., Girault, A., Rybarczyk, P., Telliez, M., Guenin, S., Tebbakha, R., Sevestre, H., Ahidouch, A., Pedersen, Stine Helene Falsig & Ouadid-Ahidouch, H., 2022, In: International Journal of Molecular Sciences . 23, 14, 20 p., 7923.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights
Andrew DeWoody, J., Jeon, J. Y., Bickham, J. W., Heenkenda, E. J., Janjua, S., Lamka, G. F., Mularo, A. J., Black, A., Brüniche-Olsen, Anna & Willoughby, J. R., 2022, In: PNAS. 119, 35, 2 p., e2210685119.Research output: Contribution to journal › Letter › Research › peer-review
- Published
The Wastewater Plasmidome and its Derived Resistome: Insight Into Their Dynamics in the Urban Water Systems
Yu, Z., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 196 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The barrier to radial oxygen loss prevents H2S intrusion and its toxic effect
Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2022, p. 15.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
The biodiversity effect of reduced tillage on soil microbiota
Frøslev, Tobias Guldberg, Nielsen, Ida Broman, Santos, S. S., Barnes, Christopher James, Bruun, Hans Henrik & Ejrnæs, R., 2022, In: Ambio. 51, 4, p. 1022-1033 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The biofilm life cycle: expanding the conceptual model of biofilm formation
Sauer, K., Stoodley, P., Goeres, D. M., Hall-Stoodley, L., Burmølle, Mette, Stewart, P. S. & Bjarnsholt, Thomas, 2022, In: Nature Reviews Microbiology. 20, 10, p. 608-620 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The chemical ecology of the fungus-farming termite symbiosis
Schmidt, Suzanne, Kildgaard, S., Guo, H., Beemelmanns, C. & Poulsen, Michael, 2022, In: Natural Product Reports. 39, 2, p. 231-248 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The chromosome-scale assembly of the Canary Islands endemic spider Dysdera silvatica (Arachnida, Araneae) sheds light on the origin and genome structure of chemoreceptor gene families in chelicerates
Escuer, P., Pisarenco, V. A., Fernandez-Ruiz, A. A., Vizueta, J., Sanchez-Herrero, J. F., Arnedo, M. A., Sanchez-Gracia, A. & Rozas, J., 2022, In: Molecular Ecology Resources. 22, 1, p. 375-390 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The chromosome-scale genomes of Dipterocarpus turbinatus and Hopea hainanensis (Dipterocarpaceae) provide insights into fragrant oleoresin biosynthesis and hardwood formation
Wang, S., Liang, H., Wang, H., Li, L., Xu, Y., Liu, Y., Liu, M., Wei, J., Ma, T., Le, C., Yang, J., He, C., Liu, J., Zhao, J., Zhao, Y., Lisby, Michael, Sahu, S. K. & Liu, H., 2022, In: Plant Biotechnology Journal. 20, 3, p. 538-553 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The co-existence of multiple oak leaf flushes contributes to the large within-tree variation in chemistry, insect attack and pathogen infection
Gaytán, Á., Moreira, X., Castagneyrol, B., Van Halder, I., De Frenne, P., Meeussen, C., Timmermans, B. G. H., Ten Hoopen, J. P. J. G., Rasmussen, P. U., Bos, N., Jaatinen, R., Pulkkinen, P., Söderlund, S., Covelo, F., Gotthard, K. & Tack, A. J. M., 2022, In: New Phytologist. 235, 4, p. 1615-1628 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The combined effect of short-term hydrological and N-fertilization manipulation of wetlands on CO2, CH4, and N2O emissions
Bonetti, G., Limpert, K. E., Brodersen, Kasper Elgetti, Trevathan-Tackett, S. M., Carnell, P. E. & Macreadie, P. I., 2022, In: Environmental Pollution. 294, 10 p., 118637.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The contraction-expansion behaviour in the demosponge Tethya wilhelma is light controlled and follows a diurnal rhythm
Flensburg, S. B., Garm, Anders Lydik & Funch, P., 2022, In: Journal of Experimental Biology. 225, 24, 6 p., 244751.Research output: Contribution to journal › Letter › Research › peer-review
- Published
The coupling between irradiance, growth, photosynthesis and prymnesin cell quota and production in two strains of the bloom-forming haptophyte, Prymnesium parvum
Medic, Nikola, Varga, E., van der Waal, D. B., Larsen, T. O. & Hansen, Per Juel, 2022, In: Harmful Algae. 112, 8 p., 102173.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The covalent reactivity of functionalized 5-hydroxy-butyrolactams is the basis for targeting of fatty acid binding protein 5 (FABP5) by the neurotrophic agent MT-21
Svenningsen, E. B., Ottosen, R. N., Jørgensen, K. H., Nisavic, M., Larsen, C. K., Hansen, B. K., Wang, Y., Lindorff-Larsen, Kresten, Tørring, T., Hacker, S. M., Palmfeldt, J. & Poulsen, T. B., 2022, In: RSC Chemical Biology. 3, 10, p. 1216-1229 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The denatured state of HIV-1 protease under native conditions
Rösner, Heike Ilona, Caldarini, M., Potel, G., Malmodin, D., Vanoni, M. A., Aliverti, A., Broglia, R. A., Kragelund, Birthe Brandt & Tiana, G., 2022, In: Proteins: Structure, Function, and Bioinformatics. 90, 1, p. 96-109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The developing airway and gut microbiota in early life is influenced by age of older siblings
Christensen, E. D., Hjelmsø, M. H., Thorsen, Jonathan Jan Ilve, Shah, S., Redgwell, T., Poulsen, Christina Egeø, Trivedi, Urvish, Russel, J., Gupta, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Rasmussen, Morten Arendt, Bisgaard, H. & Stokholm, Jakob, 2022, In: Microbiome. 10, 15 p., 106.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The drivers of avian-haemosporidian prevalence in tropical lowland forests of New Guinea in three dimensions
Vinagre-Izquierdo, C., Bodawatta, Kasun Harshana, Chmel, K., Renelies-Hamilton, J., Paul, L., Munclinger, P., Poulsen, Michael & Jønsson, Knud Andreas, 2022, In: Ecology and Evolution. 12, 2, 14 p., e8497.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The dynamic landscape of peptide activity prediction
Bárcenas, O., Pintado-Grima, C., Sidorczuk, K., Teufel, Felix Georg, Nielsen, H., Ventura, S. & Burdukiewicz, M., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 6526-6533 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The era of reference genomes in conservation genomics
Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Höglund, J., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Svardal, H., Theofanopoulou, C., de Vries, J. & 8 others, , 2022, In: Trends in Ecology and Evolution. 37, 3, p. 197-202 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The functional role of the autolysis loop in the regulation of factor X upon hemostatic response
Bonde, A. C., Lund, J., Hansen, J. J., Winther, Jakob R., Nielsen, P. F., Zahn, S., Tiainen, P., Olsen, O. H., Petersen, H. H. & Rose Bjelke, J., 2022, In: Journal of Thrombosis and Haemostasis. 20, 3, p. 589-599 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genomic basis of the plant island syndrome in Darwin’s giant daisies
Cerca, J., Petersen, B., Lazaro-Guevara, J. M., Rivera-Colón, A., Birkeland, S., Vizueta, J., Li, S., Li, Q., Loureiro, J., Kosawang, C., Díaz, P. J., Rivas-Torres, G., Fernández-Mazuecos, M., Vargas, P., McCauley, R. A., Petersen, G., Santos-Bay, L., Wales, N., Catchen, J. M., Machado, D. & 9 others, , 2022, In: Nature Communications. 13, 13 p., 3729.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The gut hormone Allatostatin C/Somatostatin regulates food intake and metabolic homeostasis under nutrient stress
Kubrak, Olga, Koyama, Takashi, Ahrentløv, Nadja, Jensen, L., Malita, Alina, Naseem, Muhammad Tayyib, Lassen, Mette, Nagy, S., Texada, Michael James, Halberg, Kenneth Veland & Rewitz, Kim, 2022, In: Nature Communications. 13, 17 p., 692.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production
Geissler, Adrian Sven, Poulsen, L. D., Doncheva, Nadezhda Tsankova, Anthon, Christian, Seemann, Ernst Stefan, González-Tortuero, E., Breüner, A., Jensen, Lars Juhl, Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2022, In: Frontiers in Microbiology. 13, 17 p., 909493.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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