Department of Biology

 

 
  1. 2022
  2. Published

    Ductal keratin 15+ luminal progenitors in normal breast exhibit a basal-like breast cancer transcriptomic signature

    Kohler, Katharina Theresa, Goldhammer, N., Demharter, S., Pfisterer, U., Khodosevich, Konstantin, Rønnov-Jessen, Lone, Petersen, Ole William, Villadsen, René & Kim, Jiyoung, 2022, In: npj Breast Cancer. 8, 1, 12 p., 81.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Ecological adaptation and birdsong: how body and bill sizes affect passerine sound frequencies

    Friis, J. I., Sabino, J., Santos, P., Dabelsteen, Torben & Cardoso, G. C., 2022, In: Behavioral Ecology. 33, 4, p. 798-806 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Ecological correlates of riverine diatom and macroinvertebrate alpha and beta diversity across Arctic Fennoscandia

    Brittain, J. E., Heino, J., Friberg, N., Aroviita, J., Kahlert, M., Karjalainen, S. M., Keck, F., Lento, J., Liljaniemi, P., Mykrä, H., Schneider, S. C. & Ylikörkkö, J., 2022, In: Freshwater Biology. 67, 1, p. 49-63 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Ecological factors driving the feather mite associations in tropical avian hosts

    Bodawatta, Kasun Harshana, Shriner, I., Pigott, S., Koane, B., Vinagre-Izquierdo, C., Rios, R. S., Jønsson, Knud Andreas & Tori, W. P., 2022, In: Journal of Avian Biology. 2022, 6, 13 p., e02951.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Ecosystem Metabolism and Gradients of Temperature, Oxygen and Dissolved Inorganic Carbon in the Littoral Zone of a Macrophyte-Dominated Lake

    Martinsen, Kenneth Thorø, Zak, N. B., Båstrup-Spohr, Lars, Kragh, T. & Sand-Jensen, Kaj, 2022, In: Journal of Geophysical Research: Biogeosciences. 127, 12, 15 p., e2022JG007193.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Editorial: Hormones and Life History Strategies

    McMenamin, S., Shkil, F. & Koyama, Takashi, 2022, In: Frontiers in Ecology and Evolution. 10, 3 p., 838555.

    Research output: Contribution to journalEditorialResearchpeer-review

  8. Published

    Editorial: Ecophysiology and biogeochemistry of marine plants in the anthropocene

    Brodersen, Kasper Elgetti, Trevathan-Tackett, S. M., Noisette, F., Björk, M., Larkum, A. W. D., Holmer, M. & Kühl, Michael, 2022, In: Frontiers in Marine Science. 9, 4 p., 1010651.

    Research output: Contribution to journalEditorialResearchpeer-review

  9. Published

    Effect of gastrointestinal alterations mimicking elderly conditions on in vitro digestion of meat and soy proteins

    Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Chemistry. 383, 9 p., 132465.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination

    Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Effect of naturally-occurring mutations on the stability and function of cancer-associated NQO1: Comparison of experiments and computation

    Pacheco-Garcia, J. L., Cagiada, Matteo, Tienne-Matos, K., Salido, E., Lindorff-Larsen, Kresten & L. Pey, A., 2022, In: Frontiers in Molecular Biosciences. 9, 17 p., 1063620.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Effect of perfluoroalkyl exposure in pregnancy and infancy on intrauterine and childhood growth and anthropometry. Sub study from COPSAC2010 birth cohort

    Sevelsted, A., Gürdeniz, G., Rago, D., Pedersen, C. T., Lasky-Su, J. A., Checa, A., Zhang, P., Wheelock, C. E., Normann, S. S., Kristensen, D. M., Rasmussen, Morten Arendt, Schullehner, J., Sdougkou, K., Martin, J. W., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: EBioMedicine. 83, 12 p., 104236.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Effects of Different Storage Temperatures on Bacterial Communities and Functional Potential in Pork Meat

    Zhao, Fan, Wei, Z., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Foods. 11, 15, 12 p., 2307.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Effects of Epiphytes on the Seagrass Phyllosphere

    Brodersen, Kasper Elgetti & Kühl, Michael, 2022, In: Frontiers in Marine Science. 9, 10 p., 821614.

    Research output: Contribution to journalReviewResearchpeer-review

  15. Published

    Effects of Epiphytic Biofilm Activity on the Photosynthetic Activity, pH and Inorganic Carbon Microenvironment of Seagrass Leaves (Zostera marina L.)

    Zhang, Q., Kühl, Michael & Brodersen, Kasper Elgetti, 2022, In: Frontiers in Marine Science. 9, 11 p., 835381.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Effects of LPS Composition in Escherichia coli on Antibacterial Activity and Bacterial Uptake of Antisense Peptide-PNA Conjugates

    Goltermann, Lise, Zhang, Meiqin, Ebbensgaard, Anna Elisabeth, Fiodorovaite, M., Yavari, Niloofar, Løbner-Olesen, Anders & Nielsen, Peter E., 2022, In: Frontiers in Microbiology. 13, 877377.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome

    Thompson, K. N., Oulhote, Y., Weihe, P., Wilkinson, J. E., Ma, S., Zhong, H., Li, J., Kristiansen, Karsten, Huttenhower, C. & Grandjean, P., 2022, In: Environmental Science & Technology. 56, 23, p. 16985-16995 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Effects of decadal nitrogen addition on carbon and nitrogen stocks in different organic matter fractions of typical steppe soils

    Niu, G., Liu, L., Wang, Y., Guan, H., Ning, Q., Liu, T., Rousk, Kathrin, Zhong, B., Yang, J., Lu, X., Han, X. & Huang, J., 2022, In: Ecological Indicators. 144, 9 p., 109471.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Effects of leaf surface temperature and plant traits on volatile organic compound emission from tundra vegetation

    Simin, Tihomir, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 196 p.

    Research output: Book/ReportPh.D. thesisResearch

  20. Published

    Effects of pollution-induced changes in oxygen conditions scaling up from individuals to ecosystems in a tropical river network

    Eriksen, T. E., Jacobsen, Dean, Demars, B. O. L., Brittain, J. E., Søli, G. & Friberg, N., 2022, In: Science of the Total Environment. 814, 11 p., 151958.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Efficient approaches for large-scale GWAS with genotype uncertainty

    Jørsboe, E. & Albrechtsen, Anders, 2022, In: G3: Genes, Genomes, Genetics (Bethesda). 12, 1, 9 p., jkab385.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

    Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

    Wang, F., Ding, P., Liang, X., Ding, X., Brandt, C. B., Sjöstedt, E., Zhu, J., Bolund, S., Zhang, L., de Rooij, L. P. M. H., Luo, L., Wei, Y., Zhao, W., Lv, Z., Haskó, J., Li, R., Qin, Q., Jia, Y., Wu, W., Yuan, Y. & 25 others, Pu, M., Wang, H., Wu, A., Xie, L., Liu, P., Chen, F., Herold, J., Kalucka, J., Karlsson, M., Zhang, X., Helmig, R. B., Fagerberg, L., Lindskog, C., Pontén, F., Uhlen, M., Bolund, L., Jessen, N., Jiang, H., Xu, X., Yang, H., Carmeliet, P., Mulder, J., Chen, D., Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 18 p., 3620.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Engineering Bifidobacterium longum Endo-α-N-acetylgalactosaminidase for Neu5Acα2-3Ga1β1-3Ga1NAc reactivity on Fetuin

    Hansen, D. K., Hansen, A. L., Koivisto, J. M., Shuoker, B., Abou Hachem, M., Winther, Jakob R. & Willemoës, Martin, 2022, In: Archives of Biochemistry and Biophysics. 725, 8 p., 109280.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Enhanced Antibiotic Tolerance of an In Vitro Multispecies Uropathogen Biofilm Model, Useful for Studies of Catheter‐Associated Urinary Tract Infections

    Hou, J., Wang, L., Alm, M., Thomsen, P., Monsen, T., Ramstedt, M. & Burmølle, Mette, 2022, In: Microorganisms. 10, 6, 15 p., 1207.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Entanglement in a qubit-qubit-tardigrade system

    Lee, K. S., Tan, Y. P., Nguyen, L. H., Budoyo, R. P., Park, K. H., Hufnagel, C., Yap, Y. S., Møbjerg, Nadja, Vedral, V., Paterek, T. & Dumke, R., 2022, In: New Journal of Physics. 24, 13 p., 123024.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Environmental drivers and sources of stream oxygen consumption in an agricultural lake catchment

    Sø, Jonas Stage, Kragh, T., Sand-Jensen, Kaj & Martinsen, Kenneth Thorø, 2022, In: Ecological Engineering. 176, 11 p., 106516.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

    Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Escaping from multiple visual threats: modulation of escape responses in Pacific staghorn sculpin (Leptocottus armatus)

    Kimura, H., Pfalzgraff, T., Levet, M., Kawabata, Y., Steffensen, John Fleng, Johansen, J. L. & Domenici, P., 2022, In: The Journal of Experimental Biology. 225, 9, 9 p., jeb243328.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Estimating intrinsic growth rates of arthropods from partial life tables using predatory mites as examples

    Janssen, A., Fonseca, M. M., Marcossi, I., Kalile, M. O., Cardoso, A. C., Walerius, A. H., Hanel, A., Marques, V., Ferla, J. J., Farias, V., Carbajal, P. A. F., Pallini, A. & Nachman, Gøsta Støger, 2022, In: Experimental and Applied Acarology. 86, 3, p. 327-342 16 p.

    Research output: Contribution to journalReviewResearchpeer-review

  31. Published
  32. Published

    Estimation of the covariance structure from SNP allele frequencies

    van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe

    Esquivel-Chávez, A., Maki, T., Tsubouchi, H., Handa, T., Kimura, H., Haber, J. E., Thon, Genevieve & Iwasaki, H., 2022, In: Genes and Genetic Systems. 97, 3, p. 123-138 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome

    van der Valk, T., Dehasque, M., Chacón-Duque, J. C., Oskolkov, N., Vartanyan, S., Heintzman, P. D., Chrzanová Pecnerová, Patrícia, Díez-del-Molino, D. & Dalén, L., 2022, In: iScience. 25, 8, 11 p., 104826.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse

    Svenningsen, Mikkel Skjoldan, Svenningsen, Sine Lo, Sørensen, Michael Askvad & Mitarai, Namiko, 2022, In: Life Science Alliance. 5, 2, 9 p., e202101076.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Explicitly modelling microtopography in permafrost landscapes in a land surface model (JULES vn5.4_microtopography)

    Smith, N. D., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. H., Westermann, S. & Chadburn, S. E., 2022, In: Geoscientific Model Development. 15, 9, p. 3603-3639 37 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Exploration of Intratumor Heterogeneity and Tumoral Microenvironment in Non-small Cell Lung Cancer

    Zhao, X., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/ReportPh.D. thesisResearch

  38. Published

    Exploring farmers’ perception, knowledge, and management techniques of salt-affected soils to enhance rice production on small land holdings in Tanzania

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Pedersen, Ole & Meliyo, J. L., 2022, In: Cogent Food and Agriculture. 8, 1, 20 p., 2140470.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Expression and characterization of disulfide-rich toxins from venomous cone snails

    Hackney, Celeste Menuet, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 163 p.

    Research output: Book/ReportPh.D. thesisResearch

  40. Published

    Expression of Opsins of the Box Jellyfish Tripedalia cystophora Reveals the First Photopigment in Cnidarian Ocelli and Supports the Presence of Photoisomerases

    Garm, Anders Lydik, Svaerke, J., Pontieri, D. & Oakley, T. H., 2022, In: Frontiers in Neuroanatomy. 16, 13 p., 916510.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    External Phosphorus Loading in New Lakes

    Kragh, T., Kolath, T., Kolath, A. S., Reitzel, K., Martinsen, Kenneth Thorø, Søndergaard, M., Hoffmann, C. C., Båstrup-Spohr, Lars & Egemose, S., 2022, In: Water. 14, 7, 21 p., 1008.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Extrachromosomal circular DNA in cancer: history, current knowledge, and methods

    Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.

    Research output: Contribution to journalReviewResearchpeer-review

  43. Published

    Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

    Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals

    Zadel, U., Cruzeiro, C., Raj Durai, A. C., Nesme, Joseph, May, R., Balázs, H., Michalke, B., Płaza, G., Schröder, P., Schloter, M. & Radl, V., 2022, In: Environmental Pollution. 313, 13 p., 119989.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Fagligt grundlag for naturløfter for Friland oksekød

    Ejrnæs, R. & Bruun, Hans Henrik, 2022, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 17 p. (Fagligt notat fra DCE – Nationalt Center for Miljø og Energi, Vol. 21).

    Research output: Book/ReportReportCommissioned

  46. Published

    False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

    Kim, J., Lee, C., Ko, B. J., Yoo, D. A., Won, S., Phillippy, A. M., Fedrigo, O., KU, thw266, Howe, K., Wood, J., Durbin, R., Formenti, G., Brown, S., Cantin, L., Mello, C. V., Cho, S., Rhie, A., Kim, H. & Jarvis, E. D., 2022, In: Genome Biology. 23, 29 p., 204.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published
  48. Published

    First circumpolar assessment of Arctic freshwater phytoplankton and zooplankton diversity: Spatial patterns and environmental factors

    Schartau, A. K., Mariash, H. L., Christoffersen, Kirsten Seestern, Bogan, D., Dubovskaya, O. P., Fefilova, E. B., Hayden, B., Ingvason, H. R., Ivanova, E. A., Kononova, O. N., Kravchuk, E. S., Lento, J., Majaneva, M., Novichkova, A. A., Rautio, M., Rühland, K. M., Shaftel, R., Smol, J. P., Vrede, T. & Kahilainen, K. K., 2022, In: Freshwater Biology. 67, 1, p. 141-158 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Flagella disruption in Bacillus subtilis increases amylase production yield

    Fehler, A. O., Kallehauge, T. B., Geissler, Adrian Sven, González-Tortuero, E., Seemann, Ernst Stefan, Gorodkin, Jan & Vinther, Jeppe, 2022, In: Microbial Cell Factories. 21, 11 p., 131.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Flooding and Soil Properties Control Plant Intra- and Interspecific Interactions in Salt Marshes

    Pellegrini, Elisa, Incerti, G., Pedersen, Ole, Moro, N., Foscari, A., Casolo, V., Contin, M. & Boscutti, F., 2022, In: Plants. 11, 15, 17 p., 1940.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Foreword

    Gawne, R. & Boomsma, Jacobus J., 2022, The Individual in the Animal Kingdom. MIT Press, 32 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  52. Published

    Formation and degeneration of scaled capillary notochaetae in Owenia fusiformis Delle Chiaje, 1844 (Oweniidae, Annelida)

    Müller, J., Bartolomaeus, T. & Tilic, E., 2022, In: Zoomorphology. 141, 1, p. 43-56 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Four new genera and six new species of lyophylloid agarics (Agaricales, Basidiomycota) from three different continents

    van de Peppel, L. J. J., Aime, M. C., Læssøe, Thomas, Pedersen, O. S., Coimbra, V. R. M., Kuyper, T. W., Stubbe, D., Aanen, D. K. & Baroni, T. J., 2022, In: Mycological Progress. 21, 10, 14 p., 85.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Functional Diversity and Evolution of Bitter Taste Receptors in Egg-Laying Mammals

    Itoigawa, A., Hayakawa, T., Zhou, Y., Manning, A. D., KU, thw266, Grutzner, F. & Imai, H., 2022, In: Molecular Biology and Evolution. 39, 6, 9 p., msac107.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Functional genomics analysis reveals the evolutionary adaptation and demographic history of pygmy lorises

    Li, M. L., Wang, S., Xu, P., Tian, H. Y., Bai, M., Zhang, Y. P., Shao, Y., Xiong, Z. J., Qi, X. G., Cooper, D. N., KU, thw266, Zhu, H. H. & Wu, D. D., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 40, 10 p., e2123030119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Functional impact and trophic morphology of small, sand‐sifting fishes on coral reefs

    Brodnicke, O. B., Hansen, C. E., Huie, J. M., Brandl, S. J. & Worsaae, Katrine, 2022, In: Functional Ecology. 36, 8, p. 1936-1948 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Functional responses of key marine bacteria to environmental change – toward genetic counselling for coastal waters

    Pinhassi, J., Farnelid, H., García, S. M., Teira, E., Galand, P. E., Obernosterer, I., Quince, C., Vila-Costa, M., Gasol, J. M., Lundin, D., Andersson, A. F., Labrenz, M. & Riemann, Lasse, 2022, In: Frontiers in Microbiology. 13, 9 p., 869093.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    GDF15 is an exercise-induced hepatokine regulated by glucagon and insulin in humans

    Plomgaard, Peter Stendahl, Hansen, J. S., Townsend, L. K., Gudiksen, Anders, Secher, Niels H., Clemmesen, J. O., Støving, R. K., Goetze, Jens P. , Wright, D. C. & Pilegaard, Henriette, 2022, In: Frontiers in Endocrinology. 13, 1037948.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published
  60. Published

    Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)

    Bertola, Laura, Miller, S. M., Williams, V. L., Naude, V. N., Coals, P., Dures, S. G., Henschel, P., Chege, M., Sogbohossou, E. A., Ndiaye, A., Kiki, M., Gaylard, A., Ikanda, D. K., Becker, M. S. & Lindsey, P., 2022, In: Evolutionary Applications. 15, 1, p. 22-39 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Genetic loci and prioritization of genes for kidney function decline derived from a meta-analysis of 62 longitudinal genome-wide association studies

    Gorski, M., Rasheed, H., Teumer, A., Thomas, L. F., Graham, S. E., Sveinbjornsson, G., Winkler, T. W., Günther, F., Stark, K. J., Chai, J-F., Tayo, B. O., Wuttke, M., Li, Y., Tin, A., Ahluwalia, T. S., Ärnlöv, J., Åsvold, B. O., Bakker, S. J. L., Banas, B., Bansal, N. & 29 others, Biggs, M. L., Biino, G., Böhnke, M., Boerwinkle, E., Bottinger, E. P., Brenner, H., Brumpton, B., Carroll, R. J., Chaker, L., Chalmers, J., Chee, M., Chee, M., Cheng, C., Chu, A. Y., Ciullo, M., Cocca, M., Cook, J. P., Coresh, J., Cusi, D., de Borst, M. H., Degenhardt, F., Eckardt, K., Endlich, K., Evans, M. K., Feitosa, M. F., Franke, A., Freitag-Wolf, S., Rossing, Peter & LifeLines Cohort Study, L. C. S., 2022, In: Kidney International. 102, 3, p. 624-639 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

    Vogelezang, S., Bradfield, J. P., Early Growth Genetics Consortium, Ahluwalia, T. V. S., Liu, X., Schnurr, T. M., Frithioff-Bøjsøe, C., Bønnelykke, K., Lind, M. V., Lauritzen, L., Michaelsen, K. F., Lund, M. A. V., Melbye, M., Morgen, C. S., Pedersen, O. B., Holm, J-C., Grarup, N., Hansen, T., Nohr, E. A., Bisgaard, H. & 3 others, Grant, S. F. A., Felix, J. F. & Jaddoe, V. W. V., 2022, In: BMC Medical Genomics. 15, 16 p., 124.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Genome binning of viral entities from bulk metagenomics data

    Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Genome-wide association study of Klebsiella pneumoniae identifies variations linked to carbapenems resistance

    Pei, N., Sun, W., He, J., Li, Y., Chen, X., Liang, T., Kristiansen, Karsten, Liu, W. & Li, J., 2022, In: Frontiers in Microbiology. 13, 11 p., 997769.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    Genome-wide study of early and severe childhood asthma identifies interaction between CDHR3 and GSDMB

    Eliasen, A. U., Pedersen, C. E. T., Rasmussen, M. A., Wang, N., Soverini, M., Fritz, A., Stokholm, J., Chawes, B. L., Morin, A., Bork-Jensen, J., Grarup, N., Pedersen, O., Hansen, T., Linneberg, A., Mortensen, P. B., Hougaard, D. M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Mors, O., Nordentoft, M. & 14 others, Børglum, A. D., Werge, Thomas, Agerbo, E., Söderhall, C., Altman, M. C., Thysen, A. H., McKennan, C. G., Brix, Susanne, Gern, J. E., Ober, C., Ahluwalia, Tarun Veer Singh, Bisgaard, H., Pedersen, A. G. & Bønnelykke, Klaus, 2022, In: Journal of Allergy and Clinical Immunology. 150, 3, p. 622-630

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Genomes shed light on the evolution of Begonia, a mega-diverse genus

    Li, L., Chen, X., Fang, D., Dong, S., Guo, X., Li, N., Campos-Dominguez, L., Wang, W., Liu, Y., Lang, X., Peng, Y., Tian, D., Thomas, D. C., Mu, W., Liu, M., Wu, C., Yang, T., Zhang, S., Yang, L., Yang, J. & 23 others, Liu, Z., Zhang, L., Zhang, X., Chen, F., Jiao, Y., Guo, Y., Hughes, M., Wang, W., Liu, X., Zhong, C., Li, A., Sahu, S. K., Yang, H., Wu, E., Sharbrough, J., Lisby, Michael, Liu, X., Xu, X., Soltis, D. E., Van de Peer, Y., Kidner, C., Zhang, S. & Liu, Huan, 2022, In: New Phytologist. 234, 1, p. 295-310 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Genomic and microbial factors affect the prognosis of anti-pd-1 immunotherapy in nasopharyngeal carcinoma

    Xu, L., Ma, Y., Fang, Chao, Peng, Z., Gao, F., Moll, J. M., Qin, S., Yu, Q., Hou, Y., Kristiansen, Karsten, Fang, W., Brix, S. & Zhang, L., 2022, In: Frontiers in Oncology. 12, 11 p., 953884.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda

    Gui, F., Lan, T., Zhao, Y., Guo, W., Dong, Y., Fang, D., Liu, H., Li, H., Wang, H., Hao, R., Cheng, X., Li, Y., Yang, P., Sahu, S. K., Chen, Y., Cheng, L., He, S., Liu, P., Fan, G., Lu, H. & 24 others, Hu, G., Dong, W., Chen, B., Jiang, Y., Zhang, Y., Xu, H., Lin, F., Slippers, B., Postma, A., Jackson, M., Abate, B. A., Tesfaye, K., Demie, A. L., Bayeleygne, M. D., Degefu, D. T., Chen, F., Kuria, P. K., Kinyua, Z. M., Liu, T., Yang, H., Huang, F., Liu, X., Sheng, J. & Kang, L., 2022, In: Protein & Cell (Print). 13, 7, p. 513-531 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

    Sun, Xin, Ciucani, M. M., Rasmussen, Jacob Agerbo, Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 2022, In: BMC Ecology and Evolution. 22, 4 p., 110.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    Genomic insights into the secondary aquatic transition of penguins

    Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., Emerling, C. A., Thomas, D. B., Bi, X., Fang, Q., Ellegaard, M. R., Feng, S., Smith, A. L., Heath, T. A., Tennyson, A. J. D., Borboroglu, P. G., Wood, J. R., Hadden, P. W., Grosser, S., Bost, C. A. & 20 others, Cherel, Y., Mattern, T., Hart, T., Sinding, Mikkel Holger Strander, Shepherd, L. D., Phillips, R. A., Quillfeldt, P., Masello, J. F., Bouzat, J. L., Ryan, P. G., Thompson, D. R., Ellenberg, U., Dann, P., Miller, G., Dee Boersma, P., Zhao, R., Gilbert, M Thomas P, Yang, H., Zhang, D. & KU, thw266, 2022, In: Nature Communications. 13, 13 p., 3912.

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    Genomic stability and phenotypic characteristics of industrially-produced Lacticaseibacillus rhamnosus GG

    Strickertsson, Marianne Stage, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 112 p.

    Research output: Book/ReportPh.D. thesisResearch

  72. Published

    Genomic surveillance of SARS-COV-2 reveals diverse circulating variant lineages in Nairobi and Kiambu Counties, Kenya

    Kuja, J. O., Kanoi, B. N., Balboa, Renzo Fidel Ferdinando, Shiluli, C., Maina, M., Waweru, H., Gathii, K., Mungai, M., Masika, M., Anzala, O., Mwau, M., Clark, T. G., Waitumbi, J. & Gitaka, J., 2022, In: BMC Genomics. 23, 1, 8 p., 627.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Genomic variation in baboons from central Mozambique unveils complex evolutionary relationships with other Papio species

    Santander, C., Molinaro, L., Mutti, G., Martínez, F. I., Mathe, J., da Silva, M. J. F., Caldon, M., Oteo-Garcia, G., Aldeias, V., Archer, W., Bamford, M., Biro, D., Bobe, R., Braun, D. R., Hammond, P., Lüdecke, T., Pinto, M. J., Meira Paulo, L., Stalmans, M., Regala, F. T. & 6 others, Bertolini, F., Moltke, Ida, Raveane, A., Pagani, L., Carvalho, S. & Capelli, C., 2022, In: BMC Ecology and Evolution. 22, 16 p., 44.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera

    Tandon, K., Ricci, F., Costa, J., Medina, M., Kühl, Michael, Blackall, L. L. & Verbruggen, H., 2022, In: GigaScience. 12, 12 p., giac127.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Genomics, Transcriptomics, and Proteomics of SSV1 and Related Fusellovirus: A Minireview

    Aulitto, M., Martinez Alvarez, Laura, Fusco, S., She, Q., Bartolucci, S., Peng, Xu & Contursi, P., 2022, In: Viruses. 14, 10, 18 p., 2082.

    Research output: Contribution to journalReviewResearchpeer-review

  76. Published

    Germin like protein genes exhibit modular expression during salt and drought stress in elite rice cultivars

    Anum, J., O'Shea, Charlotte, Hyder, M. Z., Farrukh, S., Skriver, Karen, Malik, S. I. & Yasmin, T., 2022, In: Molecular Biology Reports. 49, 1, p. 293-302 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Global change effects on moss-associated nitrogen fixation and microbial communities across pristine ecosystems

    Permin, Aya Tora Foged, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 119 p.

    Research output: Book/ReportPh.D. thesisResearch

  78. Published

    Global mapping reveals increase in lacustrine algal blooms over the past decade

    Hou, X., Feng, L., Dai, Y., Hu, C., Gibson, L., Tang, Jing, Lee, Z., Wang, Y., Cai, X., Liu, J., Zheng, Y. & Zheng, C., 2022, In: Nature Geoscience. 15, 2, p. 130-134 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Goat kid recognition of their mothers' calls is not impacted by changes in fundamental frequency or formants

    Perroux, T. A., McElligott, A. G. & Briefer, Elodie, 2022, In: Journal of Zoology. 318, 4, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Grand Challenges in Coevolution

    Medina, M., Baker, D. M., Baltrus, D. A., Bennett, G. M., Cardini, U., Correa, A. M. S., Degnan, S. M., Christa, G., Kim, E., Li, J., Nash, David Richard, Marzinelli, E., Nishiguchi, M., Prada, C., Roth, M. S., Saha, M., Smith, C. I., Theis, K. R. & Zaneveld, J., 2022, In: Frontiers in Ecology and Evolution. 9, 11 p., 618251.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Green fluorescent protein-like pigments optimise the internal light environment in symbiotic reef-building corals

    Bollati, Elena, Lyndby, N. H., D’angelo, C., Kühl, Michael, Wiedenmann, J. & Wangpraseurt, D., 2022, In: eLife. 11, 24 p., e73521.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    Greenland Ice Sheet Surfaces Colonized by Microbial Communities Emit Volatile Organic Compounds

    Doting, E. L., Davie-Martin, Cleo Lisa, Johansen, A., Benning, L. G., Tranter, M., Rinnan, Riikka & Anesio, A. M., 2022, In: Frontiers in Microbiology. 13, 14 p., 886293.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Grey wolf genomic history reveals a dual ancestry of dogs

    Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, James Seymour, Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, Anders Johannes, Willerslev, Eske, Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M Thomas P, Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 2022, In: Nature. 607, 7918, p. 313-320

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Guidelines for evaluating the conservation value of African lion (Panthera leo) translocations

    Becker, M. S., Almeida, J., Begg, C., Bertola, L., Breitenmoser, C., Breitenmoser, U., Coals, P., Funston, P., Gaylard, A., Groom, R., Henschel, P., Ikanda, D., Jorge, A., Kruger, J., Lindsey, P., Maimbo, H., Mandisodza-Chikerema, R., Maude, G., Mbizah, M., Miller, S. M. & 17 others, Mudongo, E., Mwape, H., Mweetwa, T., Naude, V., Nyirenda, V. R., Parker, A., Parker, D., Reid, C., Robson, A., Sayer, E., Selier, S. J., Sichande, M., Simukonda, C., Uiseb, K., Williams, V. L., Zimba, D. & Hunter, L., 2022, In: Frontiers in Conservation Science. 3, 13 p., 963961.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    H3K9 dimethylation safeguards cancer cells against activation of the interferon pathway

    Hansen, A. M., Ge, Y., Schuster, Mikkel Bruhn, Pundhir, Sachin, Jakobsen, J. S., Kalvisa, A., Tapia, Marta Cecylia, Gordon, Sandra, Ambri, F., Bagger, F. O., Pandey, D., Helin, K. & Porse, Bo Torben, 2022, In: Science Advances. 8, 11, eabf8627.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Hair mineral levels as indicator of wildlife demographics? a pilot study of muskoxen

    Mosbacher, J. B., Desforges, J., Michelsen, Anders, V. Hansson, S., Stelvig, M., Eulaers, I., Sonne, C., Dietz, R., Jenssen, B. M., Ciesielski, T. M., Lierhagen, S., Flaten, T. P., Le Roux, G., Aggerbeck, M. R. & Schmidt, N. M., 2022, In: Polar Research. 41, 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Haplotype and population structure inference using neural networks in whole-genome sequencing data

    Meisner, Jonas & Albrechtsen, Anders, 2022, In: Genome Research. 32, 8, p. 1542-1552 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Heat waves affect prey and predators differently via developmental plasticity: who may benefit most from global warming?

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B. & Walzer, A., 2022, In: Pest Management Science. 78, 3, p. 1099-1108 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Herpetofaunal diversity changes with climate: evidence from the Quaternary of McEachern’s Deathtrap Cave, southeastern Australia

    Ramm, T., Thorn, K. M., Hipsley, Christy Anna, Müller, J., Hocknull, S. & Melville, J., 2022, In: Journal of Vertebrate Paleontology. 41, 5, 23 p., e2009844.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    High exposure of global tree diversity to human pressure

    Guo, W-Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A., Dias, A. S., Giroldo, A. B. & 37 others, Guo, K., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Klein, T., Komac, B., Kraft, N. J. B., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Peñuelas, J., Pillar, V. D., Pisek, J., Robroek, B. J. M., Schamp, B., Slot, M., Sosinski, Ê. E., Soudzilovskaia, N. A., Thiffault, N., van Bodegom, P., van der Plas, F., Wright, I. J., Xu, W., Zheng, J., Enquist, B. J. & Svenning, J., 2022, In: PNAS. 119, 25, 11 p., e2026733119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    High nitrogen-fixing rates associated with ground-covering mosses in a tropical mountain cloud forest will decrease drastically in a future climate

    Permin, Aya Tora Foged, Horwath, A. B., Metcalfe, D. B., Priemé, Anders & Rousk, Kathrin, 2022, In: Functional Ecology. 36, 7, p. 1772-1781 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    High-speed chases along the seafloor put Bryde's whales at risk of entanglement

    Segre, P. S., drf168, drf168, Kahane-Rapport, S. R., Gough, W. T., Meÿer, M. A., Lombard, A. T., Goldbogen, J. A. & Penry, G. S., 2022, In: Conservation Science and Practice. 4, 5, 9 p., e12646.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Horizontal Gene Transfer of an IncP1 Plasmid to Soil Bacterial Community Introduced by Escherichia coli through Manure Amendment in Soil Microcosms

    Macedo, G., Olesen, Asmus Kalckar, Maccario, Lorrie, Leal, L. H., v. d. Maas, P., Heederik, D., Mevius, D., Sørensen, Søren Johannes & Schmitt, H., 2022, In: Environmental Science & Technology. 56, 16, p. 11398-11408 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Hovedbrud i udbrud

    Olsen, Johan Gotthardt & Hendricks, Vincent F., 2022, 2. ed. København: Gad. 92 p.

    Research output: Book/ReportBookEducation

  95. Published

    How Reciprocal Interactions Between the Tumor Microenvironment and Ion Transport Proteins Drive Cancer Progression

    Elingaard-Larsen, L. O., Rolver, M. G., Sørensen, E. E. & Pedersen, Stine Helene Falsig, 2022, From Malignant Transformation to Metastasis: Ion Transport in Tumor Biology. Stock, C. & Pardo, L. A. (eds.). Springer, p. 1-38 38 p. (Reviews of Physiology, Biochemistry and Pharmacology, Vol. 182).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  96. Published

    How phosphorylation impacts intrinsically disordered proteins and their function

    Newcombe, Estella Anne, Delaforge, Elise, Hartmann-Petersen, Rasmus, Skriver, Karen & Kragelund, Birthe Brandt, 2022, In: Essays in Biochemistry. 66, 7, p. 901-913 13 p.

    Research output: Contribution to journalReviewResearchpeer-review

  97. Published

    Human sperm cells can form paracetamol metabolite AM404 that directly interferes with sperm calcium signalling and function through a CatSper-dependent mechanism

    Rehfeld, Anders Aagaard, Frederiksen, H., Rasmussen, R. H., David, A., Chaker, J., Nielsen, B. S., Nielsen, J. E., Juul, Anders, Skakkebæk, Niels Erik & Kristensen, D. M., 2022, In: Human reproduction (Oxford, England). 37, 5, p. 922-935 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Hypersalinity effects on O2 flux across the diffusive boundary layer of leaves in the tropical seagrass Thalassia testudinum

    Koch, M. S., Johnson, C. R., Travis, L., Pedersen, Ole & Madden, C. J., 2022, In: Journal of Experimental Marine Biology and Ecology. 555, 8 p., 151780.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Hypothesis: Metformin is a potential reproductive toxicant

    Tavlo, M., Skakkebæk, Niels Erik, Mathiesen, Elisabeth, Kristensen, D. M., Kjær, Kurt H., Andersson, A. & Lindahl-Jacobsen, R., 2022, In: Frontiers in Endocrinology. 13, 8 p., 1000872.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Hypoxia as a physiological cue and pathological stress for coral larvae

    Alderdice, R., Pernice, M., Cárdenas, A., Hughes, D. J., Harrison, P. L., Boulotte, N., Chartrand, K., Kühl, Michael, Suggett, D. J. & Voolstra, C. R., 2022, In: Molecular Ecology. 31, 2, p. 571-587 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published

    Hypoxia in tomato fruit during ripening caused by contrasting tissue-specific diffusion resistance and respiration

    Xiao, H., Tong, Shuai, Salagovic, J., Pedersen, Ole, Verboven, P. & Nicolaï, B. M., 2022, p. 48.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

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