Department of Biology

 

 
  1. 2021
  2. Published

    Dairy consumption and physical fitness tests associated with fecal microbiome in a Chinese cohort

    Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Wang, X., Zhang, T., Zhou, H., Lu, H., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 9 p., 100038.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Danish wetlands remained poor with plant species 17-years after restoration

    Baumane, Marta, Zak, D. H., Riis, T., Kotowski, W., Hoffmann, C. C. & Baattrup-Pedersen, A., 2021, In: Science of the Total Environment. 798, 10 p., 149146.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    De vigtigste levesteder for rødlistede arter i Danmark

    Nygaard, B., Moeslund, J. E., Ejrnæs, R., Mielec, C. L., Carl, H., Clausen, K. K., Dylmer, E., Elmeros, M., Flensted, K., Fog, K., Goldberg, I., Hansen, M. D. D., Helsing, F., Jørum, P., Lissner, J., Læssøe, T., Madsen, H. B., Misser, J., Olsen, K., Søchting, U. & 2 others, Wiberg-Larsen, P. & Wind, P., 2021, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 120 p. (Videnskabelig rapport fra DCE – Nationalt Center for Miljø og Energi; No. 470).

    Research output: Book/ReportReportResearchpeer-review

  5. Published

    Declare how you are limiting your environmental impact

    Grogan, P., Buckeridge, K. M. & Priemé, Anders, 2021, In: Nature. 596, 7870, p. 35 1 p.

    Research output: Contribution to journalLetterResearchpeer-review

  6. Published

    Deconstructing transcriptional variations and their effects on immunomodulatory function among human mesenchymal stromal cells

    Sun, C., Zhang, K., Yue, J., Meng, S. & Zhang, X., 2021, In: Stem Cell Research & Therapy. 12, 16 p., 53.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals

    Xu, H., Zhen, Q., Bai, M., Fang, L., Zhang, Y., Li, B., Ge, H., Moon, S., Chen, W., Fu, W., Xu, Q., Zhou, Y., Yu, Y., Lin, L., Yong, L., Zhang, T., Chen, S., Liu, S., Zhang, H., Chen, R. & 8 others, Cao, L., Zhang, Y., Zhang, R., Yang, H., Hu, X., Akey, J. M., Jin, X. & Sun, L., 2021, In: Genome Research. 31, 7, p. 1150-1158 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Den fattige egn med den rige flora

    Schou, J. C. & Sand-Jensen, Kaj, 2021, In: URT. 4, p. 12-22

    Research output: Contribution to journalJournal articleCommunication

  9. Published

    Description of a new species and new records of Gerromorpha (Insecta: Hemiptera: Heteroptera) from Panama and Colombia

    Rodrigues, J. M. D. S., Crumière, A. J. J., Mondragón-F, S. P., Morales, I., Khila, A. & Moreira, F. F. F., 2021, In: Zootaxa. 4958, 1, p. 226-251 26 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Desensitization of human breast progenitors by a transient exposure to pregnancy levels of estrogen

    Rønnov-Jessen, Lone, Kim, Jiyoung, Goldhammer, N., Klitgaard, M. C., Smicius, M., Bechmann, M. B., Villadsen, René & Petersen, Ole William, 2021, In: Scientific Reports. 11, 7 p., 17232.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Detecting bird’s eggs in the diet of raccoon dog (Nyctereutes procyonoides)

    Bahlke, S. Ø., Nash, David Richard, Pedersen, Jes Søe, Hansen, Mette Sif, Chriél, M. & Pagh, S., 2021, In: Genetics and Biodiversity Journal. 5, 2, p. 127-139 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Detecting selection in low-coverage high-throughput sequencing data using principal component analysis

    Meisner, Jonas, Albrechtsen, Anders & Hanghøj, Kristian Ebbesen, 2021, In: BMC Bioinformatics. 22, 13 p., 470.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Development and validation of new methods for measuring predation rates in mixoplanktonic protists

    Ferreira, G. D., Calbet, A., Mansour, J. S., Not, F., Medic, Nikola, Hansen, Per Juel, Romano, F., Pitta, P., Flynn, K. J. & Mitra, A., 2021, Novel Approaches For Investigating Marine Planktonic Mixotrophy. Mitra, A., Flynn, K. J., Anestis, K., Mansour, J. S., Ferreira, G. D. & Calbet, A. (eds.). Zenodo, 69 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  14. Published

    Developmental trajectory of the healthy human gut microbiota during the first 5 years of life

    Roswall, J., Olsson, L. M., Kovatcheva-Datchary, P., Nilsson, S., Tremaroli, V., Simon, M., Kiilerich, P., Akrami, R., Kramer, M., Uhlen, M., Gummesson, A., Kristiansen, Karsten, Dahlgren, J. & Bäckhed, F., 2021, In: Cell Host & Microbe. 29, 5, p. 765-776.e3 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Dimensions of invasiveness: Links between local abundance, geographic range size, and habitat breadth in Europe's alien and native floras

    Fristoe, T. S., Chytrý, M., Dawson, W., Essl, F., Heleno, R., Kreft, H., Maurel, N., Pergl, J., Pyšek, P., Seebens, H., Weigelt, P., Vargas, P., Yang, Q., Attorre, F., Bergmeier, E., Bernhardt-Römermann, M., Biurrun, I., Boch, S., Bonari, G., Botta-Dukát, Z. & 39 others, Bruun, Hans Henrik, Byun, C., Carni, A., Carranza, M. L., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cušterevska, R., De Ronde, I., Dengler, J., Golub, V., Haveman, R., Hough-Snee, N., Jandt, U., Jansen, F., Kuzemko, A., Küzmic, F., Lenoir, J., MacAnovic, A., Marcenò, C., Martin, A. R., Michaletz, S. T., Mori, A. S., Niinemets, Ü., Peterka, T., Pielech, R., Rašomavicius, V., Rusina, S., Dias, A. S., Sibíková, M., Silc, U., Stanisci, A., Jansen, S., Svenning, J., Swacha, G., Van Der Plas, F., Vassilev, K. & Van Kleunen, M., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 22, 11 p., e2021173118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    DisCoTune: versatile auxiliary plasmids for the production of disulphide-containing proteins and peptides in the E. coli T7 system

    Bertelsen, A. B., Hackney, Celeste Menuet, Bayer, C. N., Kjelgaard, L. D., Rennig, M., Christensen, B., Sørensen, E. S., Safavi, Helena, Wulff, T., Ellgaard, Lars & Nørholm, M. H. H., 2021, In: Microbial Biotechnology. 14, 6, p. 2566-2580 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

    Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, Robin, Arakawa, T., Araki, M., Arbel, T., Lange, Jette Bornholdt, Boyd, M., Chen, Y., Coskun, M., Dalby, M., Ienasescu, H., Jørgensen, M., Kaczkowski, B., Kere, J., Li, K., Lilje, B., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Rennie, Sarah, Sandelin, Albin Gustav, Valen, E., Vitezic, M., Vitting-Seerup, K. & FANTOM Consortium, F. C., 2021, In: Nature Communications. 12, 18 p., 3297.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Disease trends in a young Chinese cohort according to fecal metagenome and plasma metabolites

    Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Zhou, H., Lu, H., Wang, X., Zhang, T., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 10 p., 100037.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly

    Renelies-Hamilton, J., Germer, K., Sillam-Dussès, D., Bodawatta, Kasun Harshana & Poulsen, Michael, 2021, In: mSphere. 6, 1, 18 p., e01023-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Disorder in a two-domain neuronal Ca2+-binding protein regulates domain stability and dynamics using ligand mimicry

    Staby, L., Kemplen, K. R., Stein, Amelie, Ploug, Michael, Clarke, J., Skriver, Karen, Heidarsson, P. O. & Kragelund, Birthe Brandt, 2021, In: Cellular and molecular life sciences : CMLS. 78, p. 2263-2278 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Divergent expression of hypoxia response systems under deoxygenation in reef-forming corals aligns with bleaching susceptibility

    Alderdice, R., Suggett, D. J., Cárdenas, A., Hughes, D. J., Kühl, Michael, Pernice, M. & Voolstra, C. R., 2021, In: Global Change Biology. 27, 2, p. 312-326 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Diversity and Evolution of Entomocorticium (Russulales, Peniophoraceae), a Genus of Bark Beetle Mutualists Derived from Free-Living, Wood Rotting Peniophora

    Araújo, J. P. M., Li, Y., Six, D., Rajchenberg, M., Smith, M. E., Johnson, A. J., Klepzig, K. D., Crous, P. W., A. Leal-Dutra, Caio, Skelton, J., Adams, S. N. & Hulcr, J., 2021, In: Journal of Fungi. 7, 12, 26 p., 1043.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Do environmental pharmaceuticals affect the composition of bacterial communities in a freshwater stream? A case study of the Knivsta river in the south of Sweden

    Hagberg, A., Gupta, S., Rzhepishevska, O., Fick, J., Burmølle, Mette & Ramstedt, M., 2021, In: Science of the Total Environment. 763, 10 p., 142991.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Don’t drink it, bury it: comparing decomposition rates with the tea bag index is possible without prior leaching

    Blume-Werry, G., Di Maurizio, V., Beil, I., Lett, Signe, Schwieger, S. & Kreyling, J., 2021, In: Plant and Soil. 465, 1-2, p. 613-621 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Draft Genome Sequence of a Polymyxin-Resistant Klebsiella pneumoniae Clinical Strain Carrying mcr-8.1 and blaNDM-5

    Pei, N., Jian, Z., Liu, Y., Liang, T., Liu, W. & Li, J., 2021, In: Microbiology resource announcements. 10, 12, 2 p., e01224-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Drier, darker and more fertile: 140 years of plant habitat change driven by land-use intensification

    Nielsen, T. F., Sand-Jensen, Kaj & Bruun, Hans Henrik, 2021, In: Journal of Vegetation Science. 32, 4, 16 p., e13066.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Drosophila TNFRs Grindelwald and Wengen bind Eiger with different affinities and promote distinct cellular functions

    Palmerini, V., Monzani, S., Laurichesse, Quentin Charles B, Loudhaief, Rihab, Mari, S., Cecatiello, V., Olieric, V., Pasqualato, S., Colombani, Julien, Andersen, Ditte Skovaa & Mapelli, M., 2021, In: Nature Communications. 12, 12 p., 2070.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Dual skin functions in amphibian osmoregulation

    Larsen, Erik Hviid, 2021, In: Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology. 253, p. 1-8 8 p., 110869.

    Research output: Contribution to journalReviewResearchpeer-review

  30. Published
  31. Published

    Dynamic evolution of transposable elements, demographic history, and gene content of paleognathous birds

    Wang, Z., Chen, G., KU, thw266 & Zhou, Q., 2021, In: Zoological Research. 42, 1, p. 51-61 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Dynamics of Baltic Sea phages driven by environmental changes

    Hoetzinger, M., Nilsson, E., Arabi, R., Osbeck, C. M. G., Pontiller, B., Hutinet, G., Bayfield, O. W., Traving, S., Kisand, V., Lundin, D., Pinhassi, J., Middelboe, Mathias & Holmfeldt, K., 2021, In: Environmental Microbiology. 23, 8, p. 4576-4594 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Dynamics of volatile organic compounds in a western Mediterranean oak forest

    Yáñez-serrano, A. M., Bach, A., Bartolomé-català, D., Matthaios, V., Seco, Roger, Llusia, J., Filella, I. & Peñuelas, J., 2021, In: Atmospheric Environment. 257, 118447.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments

    Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, Paul, M., 2021, In: One Health. 13, 9 p., 100339.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Eco-physiology of prey generalist mixoplanktonic ciliates

    Maselli, Maira, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 228 p.

    Research output: Book/ReportPh.D. thesisResearch

  36. Published

    Ecological condition, biodiversity and major environmental challenges in a tropical river network in the Bago District in South-central Myanmar: First insights to the unknown

    Eriksen, T. E., Friberg, N., Brittain, J. E., Søli, G., Ballot, A., Årstein-Eriksen, E., Blakseth, T. A. & Veiteberg Braaten, H. F., 2021, In: Limnologica. 86, 12 p., 125835.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans

    Thingholm, L. B., Bang, C., Rühlemann, M. C., Starke, A., Sicks, F., Kaspari, V., Jandowsky, A., Froelich, K., Ismer, G., Bernhard, A., Bombis, C., Struve, B., Rausch, P. & Franke, A., 2021, In: BMC Microbiology. 21, 20 p., 276.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Ecology of Arctic Lakes and Ponds

    Jeppesen, E., Christoffersen, Kirsten Seestern, Rautio, M. & Lauridsen, T. L., 2021, Arctic Ecology. Thomas, D. N. (ed.). Wiley-Blackwell, p. 159-180 22 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  39. Published

    Ectoparasitic fungi of Myrmica ants alter the success of parasitic butterflies

    Tartally, A., Szabó, N., Somogyi, A. Á., Báthori, F., Haelewaters, D., Mucsi, A., Fürjes-Mikó, Á. & Nash, David Richard, 2021, In: Scientific Reports. 11, 13 p., 24031.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Effects of dispersal strategy and migration history on genetic diversity and population structure of Antarctic lichens

    Lagostina, E., Andreev, M., Dal Grande, F., Grewe, F., Lorenz, A., Lumbsch, H. T., Rozzi, R., Ruprecht, U., Sancho, L. G., Søchting, Ulrik, Scur, M., Wirtz, N. & Printzen, C., 2021, In: Journal of Biogeography. 48, 7, p. 1635-1653 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Effects of flooding stress on the saltmarsh halophyte Salicornia fruticosa (L.) L. upscaling perspectives

    Vuerich, M., Cingano, P., Petrussa, E., Braidot, E., Pellegrini, Elisa, Mestroni, M. & Boscutti, F., 2021, p. 97. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  42. Published

    Effects of insect herbivory and changing climate on biogenic volatile organic compound emissions in the Arctic

    Rieksta, Jolanta, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/ReportPh.D. thesisResearch

  43. Published

    Effects of latitude and conspecific plant density on insect leaf herbivory in oak saplings and seedlings

    Moreira, X., Abdala-Roberts, L., De Frenne, P., Galmán, A., Gaytán, Á., Jaatinen, R., Lago-Núñez, B., Meeussen, C., Pulkkinen, P., Rasmussen, P. U., Ten Hoopen, J. P. J. G., Timmermans, B. G. H., Vázquez-González, C., Bos, N., Castagneyrol, B. & Tack, A. J. M., 2021, In: American Journal of Botany. 108, 1, p. 172-176 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Effects of x-ray free-electron laser pulse intensity on the Mn Kβ1,3 x-ray emission spectrum in photosystem II-A case study for metalloprotein crystals and solutions

    Fransson, T., Alonso-Mori, R., Chatterjee, R., Cheah, M. H., Ibrahim, M., Hussein, R., Zhang, M., Fuller, F., Gul, S., Kim, I-S., Simon, P. S., Bogacz, I., Makita, H., De Lichtenberg, C., Song, S., Batyuk, A., Sokaras, D., Massad, R., Doyle, M., Britz, A. & 7 others, Weninger, C., Zouni, A., Messinger, J., Yachandra, V. K., Yano, J., Kern, J. & Bergmann, U., 2021, In: Structural Dynamics. 8, 6, 14 p., 064302.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Effekten af tømidler på biodiversitet i jord

    Severin, M., Ingerslev, Morten & Ekelund, Flemming, 2021, Institut for Geovidenskab og Naturforvaltning, Københavns Universitet. (Videnblade Park og Landskab; No. 05.23-13).

    Research output: Book/ReportReportCommunication

  46. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  47. Published

    Efficient Production of Pyruvate Using Metabolically Engineered Lactococcus lactis

    Suo, F., Liu, J., Chen, J., Li, Xuan Ji, Solem, C. & Jensen, P. R., 2021, In: Frontiers in Bioengineering and Biotechnology. 8, 12 p., 611701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Elusive cats in our backyards: persistence of the North Chinese leopard (Panthera pardus japonensis) in a human-dominated landscape in central China

    Yang, H., Xie, Bing, Zhao, G., Gong, Y., Mou, P., Ge, J. & Feng, L., 2021, In: Integrative Zoology. 16, 1, p. 67-83 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Emergence and radiation of distemper viruses in terrestrial and marine mammals

    Stokholm, Iben, Puryear, W., Sawatzki, K., Knudsen, Steen Wilhelm, Terkelsen, Thilde Bagger, Becher, P., Siebert, U. & Olsen, Morten Tange, 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1961, 9 p., 20211969.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

    Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    En ny dansk hvepsebi Nomada bifasciata Olivier, 1811 og andre bemærkelsesværdige bier fundet på Ærø (Hymenoptera, Apoidea, Apiformes)

    Madsen, Henning Bang, Poulsen, K. R., Rasmussen, C. & Schmidt, H. T., 2021, In: Entomologiske Meddelelser. 88, 1-2, p. 23-29

    Research output: Contribution to journalJournal articleResearchpeer-review