- 2024
- Published
Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants
Theisen, Frederik Friis, Prestel, Andreas, Elkjær, Steffie Martina H, Leurs, Y. H. A., Morffy, N., Strader, L. C., O'Shea, Charlotte, Teilum, Kaare, Kragelund, Birthe Brandt & Skriver, Karen, 2024, In: Nature Communications. 15, 1, 13 p., 592.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrating coarse-grained molecular dynamics simulations with small-angle X-ray scattering data to characterize multidomain proteins and their assemblies
Thomasen, Emil, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Investigations on Microbes Attached to the Cuticle of Phytonematodes
Topalovic, Olivera, Radaković, Z. S., Elhady, A., Bredenbruch, S. & Heuer, H., 2024, Plant-Nematode Interactions. Molinari, S. (ed.). Vol. 2756. p. 257-270 14 p. (Methods in molecular biology (Clifton, N.J.)).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Cytotoxicity of Prymnesium parvum extracts and prymnesin analogs on epithelial fish gill cells RTgill‑W1 and the human colon cell line HCEC‑1CT
Varga, E., Prause, H., Riepl, M., Hochmayr, N., Berk, D., Attakpah, E., Kiss, E., Medic, Nikola, Del Favero, G., Larsen, T. O., Hansen, Per Juel & Marko, D., 2024, In: Archives of Toxicology. 98, p. 999–1014 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages
Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Editorial: Microbial fermentation for improved sensory properties and functionality of sustainable foods
Verni, M., Holt, Sylvester & Rizzello, C. G., 2024, In: Frontiers in Microbiology. 15, 2 p., 1387745.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Gut microbiota signatures in inflammatory bowel disease
Vestergaard, M. V., Allin, K. H., Eriksen, C., Zakerska-Banaszak, O., Arasaradnam, R. P., Alam, M. T., Kristiansen, Karsten, Brix, S. & Jess, T., 2024, In: United European Gastroenterology Journal. 12, 1, p. 22-33 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comment on “DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction”
Vinther, Jeppe, 2024, In: Analytical Chemistry. 96, 1, p. 606-609 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
In situ incubation of iron(II)-bearing minerals and Fe(0) reveals insights into metabolic flexibility of chemolithotrophic bacteria in a nitrate polluted karst aquifer
Visser, A. N., Martin, Joseph Donald, Osenbrück, K., Rügner, H., Grathwohl, P. & Kappler, A., 2024, In: Science of the Total Environment. 926, 16 p., 172062.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation
Wang, D., Yang, X., Ren, Z., Hu, B., Zhao, H., Yang, K., Shi, P., Zhang, Z., Feng, Q., Nawenja, C. V., Obanda, V., Robert, K., Nalikka, B., Waruhiu, C. N., Ochola, G. O., Onyuok, S. O., Ochieng, H., Li, B., Zhu, Y., Si, H. & 9 others, , 2024, In: Microbiome. 12, 1, 17 p., 72.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning
Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2024, In: Bioinformatics. 40, 2, 10 p., btae065.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Myotubularin-related-protein-7 inhibits mutant (G12V) K-RAS by direct interaction
Weidner, P., Saar, D., Söhn, M., Schroeder, T., Yu, Y., Zöllner, F. G., Ponelies, N., Zhou, X., Zwicky, A., Rohrbacher, F. N., Pattabiraman, V. R., Tanriver, M., Bauer, A., Ahmed, H., Ametamey, S. M., Riffel, P., Seger, R., Bode, J. W., Wade, R. C., Ebert, M. P. A. & 2 others, , 2024, In: Cancer Letters. 588, 19 p., 216783.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ETV2 induces endothelial, but not hematopoietic, lineage specification in birds
Weng, W., Deng, Y., Deviatiiarov, R., Hamidi, S., Kajikawa, E., Gusev, O., Kiyonari, H., KU, thw266 & Sheng, G., 2024, In: Life Science Alliance. 7, 6, 12 p., e202402694.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Postembryonic development and male paedomorphosis in Osedax (Siboglinidae, Annelida)
Worsaae, Katrine, Rouan, Alice Jeanne Monique Nadja, Seaver, E., Miyamoto, N. & Tilic, E., 2024, In: Frontiers in Neuroscience. 18, 18 p., 1369274.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.Research output: Book/Report › Ph.D. thesis › Research
- E-pub ahead of print
Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model
Xiao, H., Verboven, P., Tong, Shuai, Pedersen, Ole & Nicolaï, B., 2024, (E-pub ahead of print) In: Plant Physiology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers
Xie, Y., Ruan, F., Li, Y., Luo, M., Zhang, C., Chen, Z., Xie, Z., Weng, Z., Chen, W., Chen, W., Fang, Y., Sun, Y., Guo, M., Wang, J., Xu, S., Wang, H. & Tang, C., 2024, In: eLife. 12, 20 p., RP87868.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Circle-seq based method for eccDNA synthesis and its application as a canonical promoter independent vector for robust microRNA overexpression
Yu, J., Zhang, H., Han, Peng, Jiang, X., Li, J., Li, B., Yang, S., He, C., Mao, S., Dang, Y. & Xiang, X., 2024, In: Computational and Structural Biotechnology Journal. 23, p. 358-368 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater
Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Lake food web structure in Teici Nature reserve, Latvia: fish presence shapes functioning of pristine bog lake food webs
Zagars, M., Christoffersen, Kirsten Seestern & Cremona, F., 2024, (E-pub ahead of print) In: Hydrobiologia.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cholesterol-binding motifs in STING that control endoplasmic reticulum retention mediate anti-tumoral activity of cholesterol-lowering compounds
Zhang, B. C., Laursen, M. F., Hu, L., Hazrati, H., Narita, R., Jensen, L. S., Hansen, A. S., Huang, J., Zhang, Y., Ding, X., Muyesier, M., Nilsson, E., Banasik, A., Zeiler, C., Mogensen, T. H., Etzerodt, A., Agger, R., Johannsen, M., Kofod-Olsen, E., Paludan, S. R. & 1 others, , 2024, In: Nature Communications. 15, 1, 17 p., 2760.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass
Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fine roots and extramatrical mycelia regulate the composition of soil organic carbon and nitrogen in a subtropical montane forest
Zhao, X., Tian, Q., Michelsen, Anders, Chen, L., Yue, P., Feng, Z., Lin, Q., Zhao, R. & Liu, F., 2024, In: Forest Ecology and Management. 554, 8 p., 121661.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots
Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
PAT mRNA decapping factors are required for proper development in Arabidopsis
Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, M., 2024, (E-pub ahead of print) In: FEBS Letters.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia
Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Frost damage measured by electrolyte leakage in subarctic bryophytes increases with climate warming
van Zuijlen, K., Kassel, M., Dorrepaal, E. & Lett, Signe, 2024, In: Journal of Ecology. 112, 2, p. 220-232 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
The Origins of All Things
A.T. Harper, D. (ed.) & Seberg, Ole (ed.), 2023, 1 ed. Copnhagen: Munksgaard . 447 p.Research output: Book/Report › Book › Education
- Published
Risk factors for and pregnancy outcomes after SARS-CoV-2 in pregnancy according to disease severity: A nationwide cohort study with validation of the SARS-CoV-2 diagnosis
Aabakke, A. J. M., Petersen, T. G., Wøjdemann, K., Ibsen, M. H., Jonsdottir, F., Rønneberg, E., Andersen, C. S., Hammer, A., Clausen, T. D., Milbak, J., Burmester, L., Zethner, R., Lindved, B., Thorsen-Meyer, A., Khalil, M. R., Henriksen, B., Jønsson, L., Andersen, L. L. T., Karlsen, K. K., Pedersen, M. L. & 19 others, , 2023, In: Acta Obstetricia et Gynecologica Scandinavica. 102, 3, p. 282–293 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Searches for Neutrinos from Large High Altitude Air Shower Observatory Ultra-high-energy γ-Ray Sources Using the IceCube Neutrino Observatory
Abbasi, R., Ackermann, M., Adams, J., Aggarwal, N., Aguilar, J. A., Ahlers, M., Alameddine, J. M., Alves, A. A., Amin, N. M., Andeen, K., Anderson, T., Anton, G., Argüelles, C., Ashida, Y., Athanasiadou, S., Axani, S. N., Bai, X., Balagopal, V. A., Baricevic, M., Barwick, S. W. & 369 others, , 2023, In: Astrophysical Journal Letters. 945, 1, 11 p., L8.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk
U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Where is the field of autophagy research heading?
Abeliovich, H., Debnath, J., Ding, W. X., Jackson, W. T., Kim, D. H., Klionsky, D. J., Ktistakis, N., Margeta, M., Münz, C., Petersen, Morten, Sadoshima, J. & Vergne, I., 2023, In: Autophagy. 19, 4, 6 p.Research output: Contribution to journal › Editorial › Research
- Published
HSP70-binding motifs function as protein quality control degrons
Abildgaard, A. B., Voutsinos, Vasileios, Petersen, S. D., Larsen, Fia Brunsgaard Valsted, Kampmeyer, Caroline, Johansson, Kristoffer Enøe, Stein, Amelie, Ravid, T., Andréasson, C., Jensen, M. K., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Cellular and Molecular Life Sciences. 80, 1, 17 p., 32.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lynch syndrome, molecular mechanisms and variant classification
Abildgaard, A. B., Nielsen, S., Bernstein, I., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: British Journal of Cancer. 128, 9 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
- Published
Chemical Stimulation of Heterocyte Differentiation by the Feather Moss Hylocomium splendens: a Potential New Step in Plant-Cyanobacteria Symbioses
Alvarenga, Danillo Oliveira, Elmdam, I. V., Timm, A. B. & Rousk, Kathrin, 2023, In: Microbial Ecology. 86, p. 419-430 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Oral administration of helminth fluid modulates distinct tuft cell and immune-metabolic cues linked to reduced body fat
Andersen, D., Moll, J. M., Arora, P., Danneskiold-Samsøe, Niels Banhos, Sonne, Si Brask, Workman, C. T., Williams, Andrew Richard, Kristiansen, Karsten & Brix, S., 2023, In: Parasite Immunology. 45, 7, 12 p., e12998.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Landskabsanalyse for Gudenådalen: Pilotprojekt i forbindelse med Helhedsplan for Gudenåen
Andersen, Erling, Andersen, Peter Stubkjær, Folvig, Sara, Jensen, M., Jessen, Mette Juhl, Larsen, K. C., Løffler, L., Munck Petersen, Rikke & Vejre, Henrik, 2023, Institut for Geovidenskab og Naturforvaltning, Københavns Universitet. 155 p. (IGN Rapport; No. marts 2023).Research output: Book/Report › Report › Research
- Published
Moderate nitrogen retention in temperate heath ecosystem after elevated CO2, drought and warming through 7 years
Andresen, L. C., Ambus, Per Lennart, Beier, Claus & Michelsen, Anders, 2023, In: European Journal of Soil Science. 74, 4, 13 p., e13397.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New Echinoderes (Kinorhyncha Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Escalante, Abril Anguas, Herranz, Maria, Martínez-Arce, A., De Jesús-Navarrete, A. & Sørensen, Martin Vinther, 2023, In: Zoologischer Anzeiger. 302, p. 146-165 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The promoters of OsGLP genes exhibited differentially methylated sites under drought and salt stress in rice cultivars
Anum, J., O’Shea, C., Skriver, Karen, Saeed, M., Hyder, M. Z., Farrakh, S. & Yasmin, T., 2023, In: Euphytica. 219, 4, 15 p., 42.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The prolactin receptor scaffolds Janus kinase 2 via co-structure formation with phosphoinositide-4,5-bisphosphate
Araya-Secchi, R., Bugge, K., Seiffert, P., Petry, A., Haxholm, G. W., Lindorff-Larsen, Kresten, Pedersen, Stine Helene Falsig, Arleth, Lise & Kragelund, Birthe Brandt, 2023, In: eLife. 12, 27 p., e84645.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Glucose Controls Glucagon Secretion by Regulating Fatty Acid Oxidation in Pancreatic α-Cells
Armour, Sarah Louise, Frueh, A., Chibalina, M. V., Dou, H., Argemi Muntadas, Lidia, Hamilton, Alexander, Katzilieris Petras, Georgios, Carmeliet, P., Davies, B., Moritz, Thomas, Eliasson, L., Rorsman, P. & Knudsen, Jakob Grunnet, 2023, In: Diabetes. 72, 10, p. 1446-1459 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolic regulation of glucagon secretion
Armour, Sarah Louise, Stanley, J. E., Cantley, J., Dean, E. D. & Knudsen, Jakob Grunnet, 2023, In: The Journal of endocrinology. 259, 1, 15 p., e230081.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
More warm-adapted species in soil seed banks than in herb layer plant communities across Europe
Auffret, A. G., Vangansbeke, P., De Frenne, P., Auestad, I., Basto, S., Grandin, U., Jacquemyn, H., Jakobsson, A., Kalamees, R., Koch, M. A., Marrs, R., Marteinsdóttir, B., Wagner, M., Bekker, R. M., Bruun, H. H., Decocq, G., Hermy, M., Jankowska-Błaszczuk, M., Milberg, P., Måren, I. E. & 6 others, , 2023, In: Journal of Ecology. 111, 5, 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Do Nitrogen and Phosphorus Additions Affect Nitrogen Fixation Associated with Tropical Mosses?
Avila Clasen, Lina, Permin, Aya Tora Foged, Horwath, A. B., Metcalfe, D. B. & Rousk, Kathrin, 2023, In: Plants. 12, 7, 13 p., 1443.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolic effects of diet containing blue mussel (Mytilus edulis) and blue mussel-fed salmon in a mouse model of obesity
Azad, A. M., Bernhard, A., Shen, A., Myrmel, L. S., Lundebye, A., Lecaudey, L. A., Fjære, E., Tri Ho, Q., Sveier, H., Kristiansen, Karsten, Limborg, Morten Tønsberg & Madsen, L., 2023, In: Food Research International. 169, 11 p., 112927.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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Complexity of avian evolution revealed by family-level genomes
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A region of suppressed recombination misleads neoavian phylogenomics
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