A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Research output: Contribution to journalJournal articleResearchpeer-review

Standard

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. / Su, Zhenqiang; Labaj, Pawel P.; Li, Sheng; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Shi, Wei; Wang, Charles; Schroth, Gary P.; Setterquist, Robert A.; Thompson, John F.; Jones, Wendell D.; Xiao, Wenzhong; Xu, Weihong; Jensen, Roderick V.; Kelly, Reagan; Xu, Joshua; Conesa, Ana; Furlanello, Cesare; Gao, Hanlin; Hong, Huixiao; Jafari, Nadereh; Letovsky, Stan; Liao, Yang; Lu, Fei; Oakeley, Edward J.; Peng, Zhiyu; Praul, Craig A.; Santoyo-Lopez, Javier; Scherer, Andreas; Shi, Tieliu; Smyth, Gordon K.; Staedtler, Frank; Sykacek, Peter; Tan, Xin-Xing; Thompson, E. Aubrey; Vandesompele, Jo; Wang, May D.; Wang, Jian; Wolfinger, Russell D.; Zavadil, Jiri; Auerbach, Scott S.; Bao, Wenjun; Binder, Hans; Blomquist, Thomas; Brilliant, Murray H.; Bushel, Pierre R.; Cain, Weimin; Catalano, Jennifer G.; Chang, Ching-Wei; Chen, Tao; Chen, Geng; Chen, Rong; Chierici, Marco; Chu, Tzu-Ming; Clevert, Djork-Arne; Deng, Youping; Derti, Adnan; Devanarayan, Viswanath; Dong, Zirui; Dopazo, Joaquin; Du, Tingting; Fang, Hong; Fang, Yongxiang; Fasold, Mario; Fernandez, Anita; Fischer, Matthias; Furio-Tari, Pedro; Fuscoe, James C.; Caimet, Florian; Gaj, Stan; Gandara, Jorge; Gao, Huan; Ge, Weigong; Gondo, Yoichi; Gong, Binsheng; Gong, Meihua; Gong, Zhuolin; Green, Bridgett; Guo, Chao; Guo, Lei; Guo, Li-Wu; Hadfield, James; Hellemans, Jan; Hochreiter, Sepp; Jia, Meiwen; Jian, Min; Johnson, Charles D.; Kay, Suzanne; Kleinjans, Jos; Lababidi, Samir; Levy, Shawn; Li, Quan-Zhen; Li, Li; Li, Li; Li, Peng; Li, Yan; Li, Haiqing; Li, Jianying; Li, Shiyong; Lin, Simon M.; Lopez, Francisco J.; Lu, Xin; Luo, Heng; Ma, Xiwen; Meehan, Joseph; Megherbi, Dalila B.; Mei, Nan; Mu, Bing; Ning, Baitang; Pandey, Akhilesh; Perez-Florido, Javier; Perkins, Roger G.; Peters, Ryan; Phan, John H.; Pirooznia, Mehdi; Qian, Feng; Qing, Tao; Rainbow, Lucille; Rocca-Serra, Philippe; Sambourg, Laure; Sansone, Susanna-Assunta; Schwartz, Scott; Shah, Ruchir; Shen, Jie; Smith, Todd M.; Stegle, Oliver; Stralis-Pavese, Nancy; Stupka, Elia; Suzuki, Yutaka; Szkotnicki, Lee T.; Tinning, Matthew; Tu, Bimeng; van Deft, Joost; Vela-Boza, Alicia; Venturini, Elisa; Walker, Stephen J.; Wan, Liqing; Wang, Wei; Wang, Jinhui; Wang, Jun; Wieben, Eric D.; Willey, James C.; Wu, Po-Yen; Xuan, Jiekun; Yang, Yong; Ye, Zhan; Yin, Ye; Yu, Ying; Yuan, Yate-Ching; Zhang, John; Zhang, Ke K.; Zhang, Wenqian; Zhang, Wenwei; Zhang, Yanyan; Zhao, Chen; Zheng, Yuanting; Zhou, Yiming; Zumbo, Paul; Tong, Weida; Kreil, David P.; Mason, Christopher E.; Shi, Leming.

In: Nature Biotechnology, Vol. 32, No. 9, 2014, p. 903-914.

Research output: Contribution to journalJournal articleResearchpeer-review

Harvard

Su, Z, Labaj, PP, Li, S, Thierry-Mieg, J, Thierry-Mieg, D, Shi, W, Wang, C, Schroth, GP, Setterquist, RA, Thompson, JF, Jones, WD, Xiao, W, Xu, W, Jensen, RV, Kelly, R, Xu, J, Conesa, A, Furlanello, C, Gao, H, Hong, H, Jafari, N, Letovsky, S, Liao, Y, Lu, F, Oakeley, EJ, Peng, Z, Praul, CA, Santoyo-Lopez, J, Scherer, A, Shi, T, Smyth, GK, Staedtler, F, Sykacek, P, Tan, X-X, Thompson, EA, Vandesompele, J, Wang, MD, Wang, J, Wolfinger, RD, Zavadil, J, Auerbach, SS, Bao, W, Binder, H, Blomquist, T, Brilliant, MH, Bushel, PR, Cain, W, Catalano, JG, Chang, C-W, Chen, T, Chen, G, Chen, R, Chierici, M, Chu, T-M, Clevert, D-A, Deng, Y, Derti, A, Devanarayan, V, Dong, Z, Dopazo, J, Du, T, Fang, H, Fang, Y, Fasold, M, Fernandez, A, Fischer, M, Furio-Tari, P, Fuscoe, JC, Caimet, F, Gaj, S, Gandara, J, Gao, H, Ge, W, Gondo, Y, Gong, B, Gong, M, Gong, Z, Green, B, Guo, C, Guo, L, Guo, L-W, Hadfield, J, Hellemans, J, Hochreiter, S, Jia, M, Jian, M, Johnson, CD, Kay, S, Kleinjans, J, Lababidi, S, Levy, S, Li, Q-Z, Li, L, Li, L, Li, P, Li, Y, Li, H, Li, J, Li, S, Lin, SM, Lopez, FJ, Lu, X, Luo, H, Ma, X, Meehan, J, Megherbi, DB, Mei, N, Mu, B, Ning, B, Pandey, A, Perez-Florido, J, Perkins, RG, Peters, R, Phan, JH, Pirooznia, M, Qian, F, Qing, T, Rainbow, L, Rocca-Serra, P, Sambourg, L, Sansone, S-A, Schwartz, S, Shah, R, Shen, J, Smith, TM, Stegle, O, Stralis-Pavese, N, Stupka, E, Suzuki, Y, Szkotnicki, LT, Tinning, M, Tu, B, van Deft, J, Vela-Boza, A, Venturini, E, Walker, SJ, Wan, L, Wang, W, Wang, J, Wang, J, Wieben, ED, Willey, JC, Wu, P-Y, Xuan, J, Yang, Y, Ye, Z, Yin, Y, Yu, Y, Yuan, Y-C, Zhang, J, Zhang, KK, Zhang, W, Zhang, W, Zhang, Y, Zhao, C, Zheng, Y, Zhou, Y, Zumbo, P, Tong, W, Kreil, DP, Mason, CE & Shi, L 2014, 'A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium', Nature Biotechnology, vol. 32, no. 9, pp. 903-914. https://doi.org/10.1038/nbt.2957

APA

Su, Z., Labaj, P. P., Li, S., Thierry-Mieg, J., Thierry-Mieg, D., Shi, W., Wang, C., Schroth, G. P., Setterquist, R. A., Thompson, J. F., Jones, W. D., Xiao, W., Xu, W., Jensen, R. V., Kelly, R., Xu, J., Conesa, A., Furlanello, C., Gao, H., ... Shi, L. (2014). A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nature Biotechnology, 32(9), 903-914. https://doi.org/10.1038/nbt.2957

Vancouver

Su Z, Labaj PP, Li S, Thierry-Mieg J, Thierry-Mieg D, Shi W et al. A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nature Biotechnology. 2014;32(9):903-914. https://doi.org/10.1038/nbt.2957

Author

Su, Zhenqiang ; Labaj, Pawel P. ; Li, Sheng ; Thierry-Mieg, Jean ; Thierry-Mieg, Danielle ; Shi, Wei ; Wang, Charles ; Schroth, Gary P. ; Setterquist, Robert A. ; Thompson, John F. ; Jones, Wendell D. ; Xiao, Wenzhong ; Xu, Weihong ; Jensen, Roderick V. ; Kelly, Reagan ; Xu, Joshua ; Conesa, Ana ; Furlanello, Cesare ; Gao, Hanlin ; Hong, Huixiao ; Jafari, Nadereh ; Letovsky, Stan ; Liao, Yang ; Lu, Fei ; Oakeley, Edward J. ; Peng, Zhiyu ; Praul, Craig A. ; Santoyo-Lopez, Javier ; Scherer, Andreas ; Shi, Tieliu ; Smyth, Gordon K. ; Staedtler, Frank ; Sykacek, Peter ; Tan, Xin-Xing ; Thompson, E. Aubrey ; Vandesompele, Jo ; Wang, May D. ; Wang, Jian ; Wolfinger, Russell D. ; Zavadil, Jiri ; Auerbach, Scott S. ; Bao, Wenjun ; Binder, Hans ; Blomquist, Thomas ; Brilliant, Murray H. ; Bushel, Pierre R. ; Cain, Weimin ; Catalano, Jennifer G. ; Chang, Ching-Wei ; Chen, Tao ; Chen, Geng ; Chen, Rong ; Chierici, Marco ; Chu, Tzu-Ming ; Clevert, Djork-Arne ; Deng, Youping ; Derti, Adnan ; Devanarayan, Viswanath ; Dong, Zirui ; Dopazo, Joaquin ; Du, Tingting ; Fang, Hong ; Fang, Yongxiang ; Fasold, Mario ; Fernandez, Anita ; Fischer, Matthias ; Furio-Tari, Pedro ; Fuscoe, James C. ; Caimet, Florian ; Gaj, Stan ; Gandara, Jorge ; Gao, Huan ; Ge, Weigong ; Gondo, Yoichi ; Gong, Binsheng ; Gong, Meihua ; Gong, Zhuolin ; Green, Bridgett ; Guo, Chao ; Guo, Lei ; Guo, Li-Wu ; Hadfield, James ; Hellemans, Jan ; Hochreiter, Sepp ; Jia, Meiwen ; Jian, Min ; Johnson, Charles D. ; Kay, Suzanne ; Kleinjans, Jos ; Lababidi, Samir ; Levy, Shawn ; Li, Quan-Zhen ; Li, Li ; Li, Li ; Li, Peng ; Li, Yan ; Li, Haiqing ; Li, Jianying ; Li, Shiyong ; Lin, Simon M. ; Lopez, Francisco J. ; Lu, Xin ; Luo, Heng ; Ma, Xiwen ; Meehan, Joseph ; Megherbi, Dalila B. ; Mei, Nan ; Mu, Bing ; Ning, Baitang ; Pandey, Akhilesh ; Perez-Florido, Javier ; Perkins, Roger G. ; Peters, Ryan ; Phan, John H. ; Pirooznia, Mehdi ; Qian, Feng ; Qing, Tao ; Rainbow, Lucille ; Rocca-Serra, Philippe ; Sambourg, Laure ; Sansone, Susanna-Assunta ; Schwartz, Scott ; Shah, Ruchir ; Shen, Jie ; Smith, Todd M. ; Stegle, Oliver ; Stralis-Pavese, Nancy ; Stupka, Elia ; Suzuki, Yutaka ; Szkotnicki, Lee T. ; Tinning, Matthew ; Tu, Bimeng ; van Deft, Joost ; Vela-Boza, Alicia ; Venturini, Elisa ; Walker, Stephen J. ; Wan, Liqing ; Wang, Wei ; Wang, Jinhui ; Wang, Jun ; Wieben, Eric D. ; Willey, James C. ; Wu, Po-Yen ; Xuan, Jiekun ; Yang, Yong ; Ye, Zhan ; Yin, Ye ; Yu, Ying ; Yuan, Yate-Ching ; Zhang, John ; Zhang, Ke K. ; Zhang, Wenqian ; Zhang, Wenwei ; Zhang, Yanyan ; Zhao, Chen ; Zheng, Yuanting ; Zhou, Yiming ; Zumbo, Paul ; Tong, Weida ; Kreil, David P. ; Mason, Christopher E. ; Shi, Leming. / A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. In: Nature Biotechnology. 2014 ; Vol. 32, No. 9. pp. 903-914.

Bibtex

@article{1e0fbe7dd34e4b83ad099db324d3056b,
title = "A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium",
author = "Zhenqiang Su and Labaj, {Pawel P.} and Sheng Li and Jean Thierry-Mieg and Danielle Thierry-Mieg and Wei Shi and Charles Wang and Schroth, {Gary P.} and Setterquist, {Robert A.} and Thompson, {John F.} and Jones, {Wendell D.} and Wenzhong Xiao and Weihong Xu and Jensen, {Roderick V.} and Reagan Kelly and Joshua Xu and Ana Conesa and Cesare Furlanello and Hanlin Gao and Huixiao Hong and Nadereh Jafari and Stan Letovsky and Yang Liao and Fei Lu and Oakeley, {Edward J.} and Zhiyu Peng and Praul, {Craig A.} and Javier Santoyo-Lopez and Andreas Scherer and Tieliu Shi and Smyth, {Gordon K.} and Frank Staedtler and Peter Sykacek and Xin-Xing Tan and Thompson, {E. Aubrey} and Jo Vandesompele and Wang, {May D.} and Jian Wang and Wolfinger, {Russell D.} and Jiri Zavadil and Auerbach, {Scott S.} and Wenjun Bao and Hans Binder and Thomas Blomquist and Brilliant, {Murray H.} and Bushel, {Pierre R.} and Weimin Cain and Catalano, {Jennifer G.} and Ching-Wei Chang and Tao Chen and Geng Chen and Rong Chen and Marco Chierici and Tzu-Ming Chu and Djork-Arne Clevert and Youping Deng and Adnan Derti and Viswanath Devanarayan and Zirui Dong and Joaquin Dopazo and Tingting Du and Hong Fang and Yongxiang Fang and Mario Fasold and Anita Fernandez and Matthias Fischer and Pedro Furio-Tari and Fuscoe, {James C.} and Florian Caimet and Stan Gaj and Jorge Gandara and Huan Gao and Weigong Ge and Yoichi Gondo and Binsheng Gong and Meihua Gong and Zhuolin Gong and Bridgett Green and Chao Guo and Lei Guo and Li-Wu Guo and James Hadfield and Jan Hellemans and Sepp Hochreiter and Meiwen Jia and Min Jian and Johnson, {Charles D.} and Suzanne Kay and Jos Kleinjans and Samir Lababidi and Shawn Levy and Quan-Zhen Li and Li Li and Li Li and Peng Li and Yan Li and Haiqing Li and Jianying Li and Shiyong Li and Lin, {Simon M.} and Lopez, {Francisco J.} and Xin Lu and Heng Luo and Xiwen Ma and Joseph Meehan and Megherbi, {Dalila B.} and Nan Mei and Bing Mu and Baitang Ning and Akhilesh Pandey and Javier Perez-Florido and Perkins, {Roger G.} and Ryan Peters and Phan, {John H.} and Mehdi Pirooznia and Feng Qian and Tao Qing and Lucille Rainbow and Philippe Rocca-Serra and Laure Sambourg and Susanna-Assunta Sansone and Scott Schwartz and Ruchir Shah and Jie Shen and Smith, {Todd M.} and Oliver Stegle and Nancy Stralis-Pavese and Elia Stupka and Yutaka Suzuki and Szkotnicki, {Lee T.} and Matthew Tinning and Bimeng Tu and {van Deft}, Joost and Alicia Vela-Boza and Elisa Venturini and Walker, {Stephen J.} and Liqing Wan and Wei Wang and Jinhui Wang and Jun Wang and Wieben, {Eric D.} and Willey, {James C.} and Po-Yen Wu and Jiekun Xuan and Yong Yang and Zhan Ye and Ye Yin and Ying Yu and Yate-Ching Yuan and John Zhang and Zhang, {Ke K.} and Wenqian Zhang and Wenwei Zhang and Yanyan Zhang and Chen Zhao and Yuanting Zheng and Yiming Zhou and Paul Zumbo and Weida Tong and Kreil, {David P.} and Mason, {Christopher E.} and Leming Shi",
year = "2014",
doi = "10.1038/nbt.2957",
language = "English",
volume = "32",
pages = "903--914",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "nature publishing group",
number = "9",

}

RIS

TY - JOUR

T1 - A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

AU - Su, Zhenqiang

AU - Labaj, Pawel P.

AU - Li, Sheng

AU - Thierry-Mieg, Jean

AU - Thierry-Mieg, Danielle

AU - Shi, Wei

AU - Wang, Charles

AU - Schroth, Gary P.

AU - Setterquist, Robert A.

AU - Thompson, John F.

AU - Jones, Wendell D.

AU - Xiao, Wenzhong

AU - Xu, Weihong

AU - Jensen, Roderick V.

AU - Kelly, Reagan

AU - Xu, Joshua

AU - Conesa, Ana

AU - Furlanello, Cesare

AU - Gao, Hanlin

AU - Hong, Huixiao

AU - Jafari, Nadereh

AU - Letovsky, Stan

AU - Liao, Yang

AU - Lu, Fei

AU - Oakeley, Edward J.

AU - Peng, Zhiyu

AU - Praul, Craig A.

AU - Santoyo-Lopez, Javier

AU - Scherer, Andreas

AU - Shi, Tieliu

AU - Smyth, Gordon K.

AU - Staedtler, Frank

AU - Sykacek, Peter

AU - Tan, Xin-Xing

AU - Thompson, E. Aubrey

AU - Vandesompele, Jo

AU - Wang, May D.

AU - Wang, Jian

AU - Wolfinger, Russell D.

AU - Zavadil, Jiri

AU - Auerbach, Scott S.

AU - Bao, Wenjun

AU - Binder, Hans

AU - Blomquist, Thomas

AU - Brilliant, Murray H.

AU - Bushel, Pierre R.

AU - Cain, Weimin

AU - Catalano, Jennifer G.

AU - Chang, Ching-Wei

AU - Chen, Tao

AU - Chen, Geng

AU - Chen, Rong

AU - Chierici, Marco

AU - Chu, Tzu-Ming

AU - Clevert, Djork-Arne

AU - Deng, Youping

AU - Derti, Adnan

AU - Devanarayan, Viswanath

AU - Dong, Zirui

AU - Dopazo, Joaquin

AU - Du, Tingting

AU - Fang, Hong

AU - Fang, Yongxiang

AU - Fasold, Mario

AU - Fernandez, Anita

AU - Fischer, Matthias

AU - Furio-Tari, Pedro

AU - Fuscoe, James C.

AU - Caimet, Florian

AU - Gaj, Stan

AU - Gandara, Jorge

AU - Gao, Huan

AU - Ge, Weigong

AU - Gondo, Yoichi

AU - Gong, Binsheng

AU - Gong, Meihua

AU - Gong, Zhuolin

AU - Green, Bridgett

AU - Guo, Chao

AU - Guo, Lei

AU - Guo, Li-Wu

AU - Hadfield, James

AU - Hellemans, Jan

AU - Hochreiter, Sepp

AU - Jia, Meiwen

AU - Jian, Min

AU - Johnson, Charles D.

AU - Kay, Suzanne

AU - Kleinjans, Jos

AU - Lababidi, Samir

AU - Levy, Shawn

AU - Li, Quan-Zhen

AU - Li, Li

AU - Li, Li

AU - Li, Peng

AU - Li, Yan

AU - Li, Haiqing

AU - Li, Jianying

AU - Li, Shiyong

AU - Lin, Simon M.

AU - Lopez, Francisco J.

AU - Lu, Xin

AU - Luo, Heng

AU - Ma, Xiwen

AU - Meehan, Joseph

AU - Megherbi, Dalila B.

AU - Mei, Nan

AU - Mu, Bing

AU - Ning, Baitang

AU - Pandey, Akhilesh

AU - Perez-Florido, Javier

AU - Perkins, Roger G.

AU - Peters, Ryan

AU - Phan, John H.

AU - Pirooznia, Mehdi

AU - Qian, Feng

AU - Qing, Tao

AU - Rainbow, Lucille

AU - Rocca-Serra, Philippe

AU - Sambourg, Laure

AU - Sansone, Susanna-Assunta

AU - Schwartz, Scott

AU - Shah, Ruchir

AU - Shen, Jie

AU - Smith, Todd M.

AU - Stegle, Oliver

AU - Stralis-Pavese, Nancy

AU - Stupka, Elia

AU - Suzuki, Yutaka

AU - Szkotnicki, Lee T.

AU - Tinning, Matthew

AU - Tu, Bimeng

AU - van Deft, Joost

AU - Vela-Boza, Alicia

AU - Venturini, Elisa

AU - Walker, Stephen J.

AU - Wan, Liqing

AU - Wang, Wei

AU - Wang, Jinhui

AU - Wang, Jun

AU - Wieben, Eric D.

AU - Willey, James C.

AU - Wu, Po-Yen

AU - Xuan, Jiekun

AU - Yang, Yong

AU - Ye, Zhan

AU - Yin, Ye

AU - Yu, Ying

AU - Yuan, Yate-Ching

AU - Zhang, John

AU - Zhang, Ke K.

AU - Zhang, Wenqian

AU - Zhang, Wenwei

AU - Zhang, Yanyan

AU - Zhao, Chen

AU - Zheng, Yuanting

AU - Zhou, Yiming

AU - Zumbo, Paul

AU - Tong, Weida

AU - Kreil, David P.

AU - Mason, Christopher E.

AU - Shi, Leming

PY - 2014

Y1 - 2014

U2 - 10.1038/nbt.2957

DO - 10.1038/nbt.2957

M3 - Journal article

C2 - 25150838

VL - 32

SP - 903

EP - 914

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

IS - 9

ER -

ID: 130327625