Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes

Research output: Contribution to journal › Journal article › Research › peer-review

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Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. / Bi, Xupeng; Wang, Kun; Yang, Liandong; Pan, Hailin; Jiang, Haifeng; Wei, Qiwei; Fang, Miaoquan; Yu, Hao; Zhu, Chenglong; Cai, Yiran; He, Yuming; Gan, Xiaoni; Zeng, Honghui; Yu, Daqi; Zhu, Youan; Jiang, Huifeng; Qiu, Qiang; Yang, Huanming; Zhang, Yong E.; Wang, Wen; Zhu, Min; He, Shunping; Zhang, Guojie.

In: Cell, Vol. 184, No. 5, 2021, p. 1377-1391, e1-e14.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Bi, X, Wang, K, Yang, L, Pan, H, Jiang, H, Wei, Q, Fang, M, Yu, H, Zhu, C, Cai, Y, He, Y, Gan, X, Zeng, H, Yu, D, Zhu, Y, Jiang, H, Qiu, Q, Yang, H, Zhang, YE, Wang, W, Zhu, M, He, S & Zhang, G 2021, 'Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes', Cell, vol. 184, no. 5, pp. 1377-1391, e1-e14. https://doi.org/10.1016/j.cell.2021.01.046

APA

Bi, X., Wang, K., Yang, L., Pan, H., Jiang, H., Wei, Q., Fang, M., Yu, H., Zhu, C., Cai, Y., He, Y., Gan, X., Zeng, H., Yu, D., Zhu, Y., Jiang, H., Qiu, Q., Yang, H., Zhang, Y. E., ... Zhang, G. (2021). Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. Cell, 184(5), 1377-1391, e1-e14. https://doi.org/10.1016/j.cell.2021.01.046

Vancouver

Bi X, Wang K, Yang L, Pan H, Jiang H, Wei Q et al. Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. Cell. 2021;184(5):1377-1391, e1-e14. https://doi.org/10.1016/j.cell.2021.01.046

Author

Bi, Xupeng ; Wang, Kun ; Yang, Liandong ; Pan, Hailin ; Jiang, Haifeng ; Wei, Qiwei ; Fang, Miaoquan ; Yu, Hao ; Zhu, Chenglong ; Cai, Yiran ; He, Yuming ; Gan, Xiaoni ; Zeng, Honghui ; Yu, Daqi ; Zhu, Youan ; Jiang, Huifeng ; Qiu, Qiang ; Yang, Huanming ; Zhang, Yong E. ; Wang, Wen ; Zhu, Min ; He, Shunping ; Zhang, Guojie. / Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. In: Cell. 2021 ; Vol. 184, No. 5. pp. 1377-1391, e1-e14.

Bibtex

@article{c10e2030ef594455ae5fd51e4db12b55,
title = "Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes",
abstract = "Rich fossil evidence suggests that many traits and functions related to terrestrial evolution were present long before the ancestor of lobe- and ray-finned fishes. Here, we present genome sequences of the bichir, paddlefish, bowfin, and alligator gar, covering all major early divergent lineages of ray-finned fishes. Our analyses show that these species exhibit many mosaic genomic features of lobe- and ray-finned fishes. In particular, many regulatory elements for limb development are present in these fishes, supporting the hypothesis that the relevant ancestral regulation networks emerged before the origin of tetrapods. Transcriptome analyses confirm the homology between the lung and swim bladder and reveal the presence of functional lung-related genes in early ray-finned fishes. Furthermore, we functionally validate the essential role of a jawed vertebrate highly conserved element for cardiovascular development. Our results imply the ancestors of jawed vertebrates already had the potential gene networks for cardio-respiratory systems supporting air breathing. Comparative analyses of divergent lineages of ray-finned fishes reveal that that these species exhibit mosaic genomic features that have facilitated the adaptive evolution of phenotypes that contributed to the water-to-land transition.",
keywords = "basal ray-finned fishes, cardiorespiratory system, genome evolution, limb, lung, swim bladder, terrestrial adaptation, vertebrate landing",
author = "Xupeng Bi and Kun Wang and Liandong Yang and Hailin Pan and Haifeng Jiang and Qiwei Wei and Miaoquan Fang and Hao Yu and Chenglong Zhu and Yiran Cai and Yuming He and Xiaoni Gan and Honghui Zeng and Daqi Yu and Youan Zhu and Huifeng Jiang and Qiang Qiu and Huanming Yang and Zhang, {Yong E.} and Wen Wang and Min Zhu and Shunping He and Guojie Zhang",
year = "2021",
doi = "10.1016/j.cell.2021.01.046",
language = "English",
volume = "184",
pages = "1377--1391, e1--e14",
journal = "Cell",
issn = "0092-8674",
publisher = "Cell Press",
number = "5",

}

RIS

TY - JOUR

T1 - Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes

AU - Bi, Xupeng

AU - Wang, Kun

AU - Yang, Liandong

AU - Pan, Hailin

AU - Jiang, Haifeng

AU - Wei, Qiwei

AU - Fang, Miaoquan

AU - Yu, Hao

AU - Zhu, Chenglong

AU - Cai, Yiran

AU - He, Yuming

AU - Gan, Xiaoni

AU - Zeng, Honghui

AU - Yu, Daqi

AU - Zhu, Youan

AU - Jiang, Huifeng

AU - Qiu, Qiang

AU - Yang, Huanming

AU - Zhang, Yong E.

AU - Wang, Wen

AU - Zhu, Min

AU - He, Shunping

AU - Zhang, Guojie

PY - 2021

Y1 - 2021

N2 - Rich fossil evidence suggests that many traits and functions related to terrestrial evolution were present long before the ancestor of lobe- and ray-finned fishes. Here, we present genome sequences of the bichir, paddlefish, bowfin, and alligator gar, covering all major early divergent lineages of ray-finned fishes. Our analyses show that these species exhibit many mosaic genomic features of lobe- and ray-finned fishes. In particular, many regulatory elements for limb development are present in these fishes, supporting the hypothesis that the relevant ancestral regulation networks emerged before the origin of tetrapods. Transcriptome analyses confirm the homology between the lung and swim bladder and reveal the presence of functional lung-related genes in early ray-finned fishes. Furthermore, we functionally validate the essential role of a jawed vertebrate highly conserved element for cardiovascular development. Our results imply the ancestors of jawed vertebrates already had the potential gene networks for cardio-respiratory systems supporting air breathing. Comparative analyses of divergent lineages of ray-finned fishes reveal that that these species exhibit mosaic genomic features that have facilitated the adaptive evolution of phenotypes that contributed to the water-to-land transition.

AB - Rich fossil evidence suggests that many traits and functions related to terrestrial evolution were present long before the ancestor of lobe- and ray-finned fishes. Here, we present genome sequences of the bichir, paddlefish, bowfin, and alligator gar, covering all major early divergent lineages of ray-finned fishes. Our analyses show that these species exhibit many mosaic genomic features of lobe- and ray-finned fishes. In particular, many regulatory elements for limb development are present in these fishes, supporting the hypothesis that the relevant ancestral regulation networks emerged before the origin of tetrapods. Transcriptome analyses confirm the homology between the lung and swim bladder and reveal the presence of functional lung-related genes in early ray-finned fishes. Furthermore, we functionally validate the essential role of a jawed vertebrate highly conserved element for cardiovascular development. Our results imply the ancestors of jawed vertebrates already had the potential gene networks for cardio-respiratory systems supporting air breathing. Comparative analyses of divergent lineages of ray-finned fishes reveal that that these species exhibit mosaic genomic features that have facilitated the adaptive evolution of phenotypes that contributed to the water-to-land transition.

KW - basal ray-finned fishes

KW - cardiorespiratory system

KW - genome evolution

KW - limb

KW - lung

KW - swim bladder

KW - terrestrial adaptation

KW - vertebrate landing

U2 - 10.1016/j.cell.2021.01.046

DO - 10.1016/j.cell.2021.01.046

M3 - Journal article

C2 - 33545088

AN - SCOPUS:85100389355

VL - 184

SP - 1377-1391, e1-e14

JO - Cell

JF - Cell

SN - 0092-8674

IS - 5

ER -

ID: 258276595