Why sequence all eukaryotes?

Research output: Contribution to journalJournal articleResearchpeer-review

Standard

Why sequence all eukaryotes? / Blaxter, Mark; Archibald, John M.; Childers, Anna K.; Coddington, Jonathan A.; Crandall, Keith A.; Di Palma, Federica; Durbin, Richard; Edwards, Scott V.; Graves, Jennifer A. M.; Hackett, Kevin J.; Hall, Neil; Jarvis, Erich D.; Johnson, Rebecca N.; Karlsson, Elinor K.; Kress, W. John; Kuraku, Shigehiro; Lawniczak, Mara K. N.; Lindblad-Toh, Kerstin; Lopez, Jose V.; Moran, Nancy A.; Robinson, Gene E.; Ryder, Oliver A.; Shapiro, Beth; Soltis, Pamela S.; Warnow, Tandy; Zhang, Guojie; Lewin, Harris A.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, No. 4, e2115636118, 2022.

Research output: Contribution to journalJournal articleResearchpeer-review

Harvard

Blaxter, M, Archibald, JM, Childers, AK, Coddington, JA, Crandall, KA, Di Palma, F, Durbin, R, Edwards, SV, Graves, JAM, Hackett, KJ, Hall, N, Jarvis, ED, Johnson, RN, Karlsson, EK, Kress, WJ, Kuraku, S, Lawniczak, MKN, Lindblad-Toh, K, Lopez, JV, Moran, NA, Robinson, GE, Ryder, OA, Shapiro, B, Soltis, PS, Warnow, T, Zhang, G & Lewin, HA 2022, 'Why sequence all eukaryotes?', Proceedings of the National Academy of Sciences of the United States of America, vol. 119, no. 4, e2115636118. https://doi.org/10.1073/pnas.2115636118

APA

Blaxter, M., Archibald, J. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Di Palma, F., Durbin, R., Edwards, S. V., Graves, J. A. M., Hackett, K. J., Hall, N., Jarvis, E. D., Johnson, R. N., Karlsson, E. K., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Lindblad-Toh, K., Lopez, J. V., ... Lewin, H. A. (2022). Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115636118]. https://doi.org/10.1073/pnas.2115636118

Vancouver

Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 2022;119(4). e2115636118. https://doi.org/10.1073/pnas.2115636118

Author

Blaxter, Mark ; Archibald, John M. ; Childers, Anna K. ; Coddington, Jonathan A. ; Crandall, Keith A. ; Di Palma, Federica ; Durbin, Richard ; Edwards, Scott V. ; Graves, Jennifer A. M. ; Hackett, Kevin J. ; Hall, Neil ; Jarvis, Erich D. ; Johnson, Rebecca N. ; Karlsson, Elinor K. ; Kress, W. John ; Kuraku, Shigehiro ; Lawniczak, Mara K. N. ; Lindblad-Toh, Kerstin ; Lopez, Jose V. ; Moran, Nancy A. ; Robinson, Gene E. ; Ryder, Oliver A. ; Shapiro, Beth ; Soltis, Pamela S. ; Warnow, Tandy ; Zhang, Guojie ; Lewin, Harris A. / Why sequence all eukaryotes?. In: Proceedings of the National Academy of Sciences of the United States of America. 2022 ; Vol. 119, No. 4.

Bibtex

@article{424e4a18b8c84786b99e99464f1ee34d,
title = "Why sequence all eukaryotes?",
abstract = "Life on Earth has evolved from initial simplicity to the astounding complexity we experience today. Bacteria and archaea have largely excelled in metabolic diversification, but eukaryotes additionally display abundant morphological innovation. How have these innovations come about and what constraints are there on the origins of novelty and the continuing maintenance of biodiversity on Earth? The history of life and the code for the working parts of cells and systems are written in the genome. The Earth BioGenome Project has proposed that the genomes of all extant, named eukaryotes-about 2 million species-should be sequenced to high quality to produce a digital library of life on Earth, beginning with strategic phylogenetic, ecological, and high-impact priorities. Here we discuss why we should sequence all eukaryotic species, not just a representative few scattered across the many branches of the tree of life.We suggest that many questions of evolutionary and ecological significance will only be addressable when whole-genome data representing divergences at all of the branchings in the tree of life or all species in natural ecosystems are available. We envisage that a genomic tree of life will foster understanding of the ongoing processes of speciation, adaptation, and organismal dependencies within entire ecosystems. These explorations will resolve long-standing problems in phylogenetics, evolution, ecology, conservation, agriculture, bioindustry, and medicine.",
keywords = "Conservation, Diversity, Ecology, Evolution, Genome",
author = "Mark Blaxter and Archibald, {John M.} and Childers, {Anna K.} and Coddington, {Jonathan A.} and Crandall, {Keith A.} and {Di Palma}, Federica and Richard Durbin and Edwards, {Scott V.} and Graves, {Jennifer A. M.} and Hackett, {Kevin J.} and Neil Hall and Jarvis, {Erich D.} and Johnson, {Rebecca N.} and Karlsson, {Elinor K.} and Kress, {W. John} and Shigehiro Kuraku and Lawniczak, {Mara K. N.} and Kerstin Lindblad-Toh and Lopez, {Jose V.} and Moran, {Nancy A.} and Robinson, {Gene E.} and Ryder, {Oliver A.} and Beth Shapiro and Soltis, {Pamela S.} and Tandy Warnow and Guojie Zhang and Lewin, {Harris A.}",
note = "Publisher Copyright: {\textcopyright} 2022 National Academy of Sciences. All rights reserved.",
year = "2022",
doi = "10.1073/pnas.2115636118",
language = "English",
volume = "119",
journal = "Proceedings of the National Academy of Sciences of the United States of America",
issn = "0027-8424",
publisher = "The National Academy of Sciences of the United States of America",
number = "4",

}

RIS

TY - JOUR

T1 - Why sequence all eukaryotes?

AU - Blaxter, Mark

AU - Archibald, John M.

AU - Childers, Anna K.

AU - Coddington, Jonathan A.

AU - Crandall, Keith A.

AU - Di Palma, Federica

AU - Durbin, Richard

AU - Edwards, Scott V.

AU - Graves, Jennifer A. M.

AU - Hackett, Kevin J.

AU - Hall, Neil

AU - Jarvis, Erich D.

AU - Johnson, Rebecca N.

AU - Karlsson, Elinor K.

AU - Kress, W. John

AU - Kuraku, Shigehiro

AU - Lawniczak, Mara K. N.

AU - Lindblad-Toh, Kerstin

AU - Lopez, Jose V.

AU - Moran, Nancy A.

AU - Robinson, Gene E.

AU - Ryder, Oliver A.

AU - Shapiro, Beth

AU - Soltis, Pamela S.

AU - Warnow, Tandy

AU - Zhang, Guojie

AU - Lewin, Harris A.

N1 - Publisher Copyright: © 2022 National Academy of Sciences. All rights reserved.

PY - 2022

Y1 - 2022

N2 - Life on Earth has evolved from initial simplicity to the astounding complexity we experience today. Bacteria and archaea have largely excelled in metabolic diversification, but eukaryotes additionally display abundant morphological innovation. How have these innovations come about and what constraints are there on the origins of novelty and the continuing maintenance of biodiversity on Earth? The history of life and the code for the working parts of cells and systems are written in the genome. The Earth BioGenome Project has proposed that the genomes of all extant, named eukaryotes-about 2 million species-should be sequenced to high quality to produce a digital library of life on Earth, beginning with strategic phylogenetic, ecological, and high-impact priorities. Here we discuss why we should sequence all eukaryotic species, not just a representative few scattered across the many branches of the tree of life.We suggest that many questions of evolutionary and ecological significance will only be addressable when whole-genome data representing divergences at all of the branchings in the tree of life or all species in natural ecosystems are available. We envisage that a genomic tree of life will foster understanding of the ongoing processes of speciation, adaptation, and organismal dependencies within entire ecosystems. These explorations will resolve long-standing problems in phylogenetics, evolution, ecology, conservation, agriculture, bioindustry, and medicine.

AB - Life on Earth has evolved from initial simplicity to the astounding complexity we experience today. Bacteria and archaea have largely excelled in metabolic diversification, but eukaryotes additionally display abundant morphological innovation. How have these innovations come about and what constraints are there on the origins of novelty and the continuing maintenance of biodiversity on Earth? The history of life and the code for the working parts of cells and systems are written in the genome. The Earth BioGenome Project has proposed that the genomes of all extant, named eukaryotes-about 2 million species-should be sequenced to high quality to produce a digital library of life on Earth, beginning with strategic phylogenetic, ecological, and high-impact priorities. Here we discuss why we should sequence all eukaryotic species, not just a representative few scattered across the many branches of the tree of life.We suggest that many questions of evolutionary and ecological significance will only be addressable when whole-genome data representing divergences at all of the branchings in the tree of life or all species in natural ecosystems are available. We envisage that a genomic tree of life will foster understanding of the ongoing processes of speciation, adaptation, and organismal dependencies within entire ecosystems. These explorations will resolve long-standing problems in phylogenetics, evolution, ecology, conservation, agriculture, bioindustry, and medicine.

KW - Conservation

KW - Diversity

KW - Ecology

KW - Evolution

KW - Genome

U2 - 10.1073/pnas.2115636118

DO - 10.1073/pnas.2115636118

M3 - Journal article

C2 - 35042801

AN - SCOPUS:85123106647

VL - 119

JO - Proceedings of the National Academy of Sciences of the United States of America

JF - Proceedings of the National Academy of Sciences of the United States of America

SN - 0027-8424

IS - 4

M1 - e2115636118

ER -

ID: 291680069