- Published
Estimation of the covariance structure from SNP allele frequencies
van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of model fit of inferred admixture proportions
Garcia Erill, Genís & Albrechtsen, Anders, 2020, In: Molecular Ecology Resources. 20, 4, p. 936-949Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of population structure inferred by principal component analysis or the admixture model
Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for a Na+/Ca2+ exchange mechanism in frog skin epithelium
Madsen, K. H., Larsen, Birger Brodin & Nielsen, Rasmus, 1999, In: Pflügers Archiv - European Journal of Physiology. 437, 2, p. 175-81 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau
Chen, N., Zhang, Z., Hou, J., Chen, J., Gao, X., Tang, L., Wangdue, S., Zhang, X., Sinding, Mikkel Holger Strander, Liu, X., Han, J., Lü, H., Lei, C., Marshall, F. & Liu, X., 2023, In: Science Advances. 9, 50, 13 p., eadi6857.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary Study of the Crassphage Virus at Gene Level
Rossi, A., Treu, L., Toppo, S., Zschach, Henrike, Campanaro, S. & Dutilh, B. E., 2020, In: Viruses. 12, 9, 13 p., 1035.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary analysis of foot-and-mouth disease virus serotype SAT 1 isolates from East Africa suggests two independent introductions from southern Africa
Sangula, A. K., Belsham, G., Muwanika, V. B., Heller, Rasmus, Balinda, S. N., Masembe, C. & Siegismund, Hans Redlef, 30 Nov 2010, In: BMC Evolutionary Biology. 10, 1, p. 371Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome
van der Valk, T., Dehasque, M., Chacón-Duque, J. C., Oskolkov, N., Vartanyan, S., Heintzman, P. D., Chrzanová Pecnerová, Patrícia, Díez-del-Molino, D. & Dalén, L., 2022, In: iScience. 25, 8, 11 p., 104826.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary genomics and conservation of the endangered Przewalski's horse
Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M. & 17 others, , 2015, In: Current Biology. 25, 19, p. 2577-2583 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary history of the roan antelope across its African range
Gonçalves, M., Siegismund, Hans Redlef, van Vuuren, B. J., Ferrand, N. & Godinho, R., 2021, In: Journal of Biogeography. 48, 11, p. 2812-2827 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolving hidden Markov models for protein secondary structure prediction
Won, K. J., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2005, The 2005 IEEE Congress on Evolutionary Computation, IEEE CEC 2005: Proceedings. IEEE, Vol. 3. p. 33-40 8 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Excess primer degradation by Exo I improves the preparation of 3' cDNA ligation-based sequencing libraries
Enroth, Christel Hougård, Fehler, A. O., Poulsen, L. D. & Vinther, Jeppe, 2019, In: BioTechniques. 67, 3, p. 110-116Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exogenous quinones inhibit photosynthetic electron transfer in Chloroflexus aurantiacus by specific quenching of the excited bacteriochlorophyll c antenna
Frigaard, Niels-Ulrik, Tokita, S. & Matsuura, K., 1999, In: BBA General Subjects. 1413, 3, p. 108-116 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes
Albrechtsen, A., Grarup, N., Li, Y., Sparsø, T. H., Tian, G., Cao, H., Jiang, T., Kim, S. Y., Korneliussen, T. S., Li, Q., Nie, C., Wu, R., Skotte, L., Morris, A. P., Ladenvall, C., Cauchi, S., Stancáková, A., Andersen, G., Astrup, A., Banasik, K. & 86 others, , 2013, In: Diabetologia. 56, 2, p. 298-310 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Explainable Image Quality Assessments in Teledermatological Photography
Jalaboi, R., Winther, Ole & Galimzianova, A., 2023, In: Telemedicine and e-Health. 29, 9, p. 1342-1348 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring antidepressant treatment response using biological and clinical measurements
Nøhr, A. K., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Exploring the central dogma from both ends. Omics integration of Hi-C sequencing and Raman spectroscopic data
Kumar, V., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Exploring the conformational space of proteins using probabilistic models
Harder, T. P., 2011Research output: Book/Report › Ph.D. thesis › Research
- Published
Expression of IGF-II mRNA-binding proteins (IMPs) in gonads and testicular cancer
Hammer, N. A., Hansen, Thomas van Overeem, Byskov, A. G., Rajpert-De Meyts, E., Grøndahl, M. L., Bredkjaer, H. E., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2005, In: Reproduction. 130, 2, p. 203-12 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expression, purification and preliminary diffraction studies of PhnP
Podzelinska, K., He, S., Soares, A., Zechel, D., Hove-Jensen, B. & Jia, Z., 2008, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 64, Pt 6, p. 554-7 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extensive X-linked adaptive evolution in central chimpanzees
Hvilsom, C., Qian, Y., Bataillon, T., Li, Y., Mailund, T., Sallé, B., Carlsen, F., Li, R., Zheng, H., Jiang, T., Jiang, H., Jin, X., Terkelsen, K. M., Hobolth, A., Siegismund, Hans Redlef, Wang, J. & Schierup, M. H., 2012, In: Proceedings of the National Academy of Sciences USA (PNAS). 109, 6, p. 2054-2059 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extinct New Zealand megafauna were not in decline before human colonization
Allentoft, Morten Erik, Heller, Rasmus, Oskam, C. L., Lorenzen, Eline, Hale, M. L., Gilbert, M Thomas P, Jacomb, C., Holdaway, R. N. & Bunce, M., 2014, In: Proceedings of the National Academy of Sciences USA (PNAS). 111, 13, p. 4922-4927 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extinctions, genetic erosion and conservation options for the black rhinoceros (Diceros bicornis)
Moodley, Y., Russo, I. M., Dalton, D. L., Kotzé, A., Muya, S., Haubensak, P., Bálint, B., Munimanda, G. K., Deimel, C., Setzer, A., Dicks, K., Herzig-Straschil, B., Kalthoff, D. C., Siegismund, Hans Redlef, Robovský, J., O'Donoghue, P. & Bruford, M. W., 8 Feb 2017, In: Scientific Reports. 7, 16 p., 41417.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Farnesylated heat shock protein 40 is a component of membrane-bound RISC in Arabidopsis
Sjögren, L., Floris, M., Barghetti, A., Völlmy, F., Linding, R. & Brodersen, Peter, 2018, In: Journal of Biological Chemistry. 293, 43, p. 16608-16622Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli
Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and accurate out-of-core PCA framework for large scale biobank data
Li, Z., Meisner, Jonas & Albrechtsen, Anders, 2023, In: Genome Research. 33, 9, p. 1599-1608 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding
Hanghøj, Kristian Ebbesen, Moltke, Ida, Andersen, P. A., Manica, A. & Korneliussen, Thorfinn Sand, May 2019, In: GigaScience. 8, 5, 9 p., giz034.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Menzel, P., Ng, K. L. & Krogh, Anders, 2016, In: Nature Communications. 7, 9 p., 11257.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast large-scale clustering of protein structures using Gauss integrals
Harder, T. P., Borg, M., Boomsma, Wouter, Røgen, P. & Hamelryck, Thomas Wim, 2012, In: Bioinformatics. 28, 4, p. 510-515 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast phylogenetic DNA barcoding
Terkelsen, K. M., Boomsma, Wouter, Willerslev, Eske & Nielsen, Rasmus, 2008, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 363, 1512, p. 3997-4002 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation
Wu, X., Johansen, Jens Vilstrup & Helin, K., 28 Mar 2013, In: Molecular Cell. 49, 6, p. 1134-46 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
First estimates of genetic diversity for the highly endangered giant sable antelope using a set of 57 microsatellites
Pinto, P. V., Lopes, S., Mourao, S., Baptista, S., Siegismund, Hans Redlef, Van Vuuren, B. J., Beja, P., Ferrand, N. & Godinho, R., 2015, In: European Journal of Wildlife Research. 61, 2, p. 313-317 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fitness consequences of nest infiltration by the mutualist-exploiter Megalomyrmex adamsae
Adams, R. M. M., Shah, K., Antonov, L. D. & Mueller, U. G., 2012, In: Ecological Entomology. 37, 6, p. 453-462 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Flagella disruption in Bacillus subtilis increases amylase production yield
Fehler, A. O., Kallehauge, T. B., Geissler, Adrian Sven, González-Tortuero, E., Seemann, Ernst Stefan, Gorodkin, Jan & Vinther, Jeppe, 2022, In: Microbial Cell Factories. 21, 11 p., 131.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FluKB: a knowledge-based system for influenza vaccine target discovery and analysis of the immunological properties of influenza viruses
Simon, C., Kudahl, U. J., Sun, J., Olsen, L. R., Zhang, G. L., Reinherz, E. L. & Brusic, V., 2015, In: Clinical & Developmental Immunology. 2015, 11 p., 380975.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Folliculin variants linked to Birt-Hogg-Dubé syndrome are targeted for proteasomal degradation
Bjørnkjær, Lene, Stein, Amelie, Grønbæk-Thygesen, Martin, Nygaard, L., Søltoft, C. L., Nielsen, S. V., Lisby, Michael, Ravid, T., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2020, In: PLOS Genetics. 16, 11, 28 p., e1009187.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Foot-and-mouth disease virus serotype SAT 3 in long-horned ankole calf, Uganda
Dhikusooka, M. T., Tjørnehøj, K., Ayebazibwe, C., Namatovu, A., Ruhweza, S., Siegismund, Hans Redlef, Wekesa, S. N., Normann, P. & Belsham, G. J., 2015, In: Emerging Infectious Diseases (Print Edition). 21, 1, p. 111-114 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Forecasting Mood in Bipolar Disorder From Smartphone Self-assessments: Hierarchical Bayesian Approach
Busk, J., Faurholt-Jepsen, M., Frost, M., Bardram, J. E., Kessing, Lars Vedel & Winther, Ole, 1 Apr 2020, In: JMIR mHealth and uHealth. 8, 4, 14 p., e15028.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method
Valentin, J., Andreetta, C., Boomsma, Wouter, Bottaro, S., Ferkinghoff-Borg, J., Frellsen, J., Mardia, K. V., Tian, P. & Hamelryck, Thomas Wim, 2014, In: Proteins: Structure, Function, and Bioinformatics. 82, 2, p. 288-299 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Forskningsbaseret undervisning- og hva' så!
Willemoës, Martin & Vogel, U. B., 2007, In: Biozoom. 3Research output: Contribution to journal › Comment/debate › Research
- Published
Founder effect of the RETC611Y mutation in multiple endocrine neoplasia 2A in Denmark: a nationwide Study
Sloth Mathiesen, J., Kroustrup, J. P., Vestergaard, P., Krag, K. S., Poulsen, P. L., Rasmussen, Å. K., Feldt-Rasmussen, Ulla, Gaustadnes, M., Ørntoft, T. F., Rossing, M., Nielsen, Finn Cilius, Albrechtsen, Anders, Brixen, K., Godballe, C. & Frederiksen, A. L., Dec 2017, In: Thyroid. 27, 12, p. 1505-1510 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FoxA1 directs the lineage and immunosuppressive properties of a novel regulatory T cell population in EAE and MS
Liu, Yawei, Carlsson, R., Comabella, M., Wang, J., Kosicki, M. K., Carrion, B., Hasan, M., Wu, X., Montalban, X., Dziegiel, Morten Hanefeld, Sellebjerg, Finn Thorup, Sørensen, Per Soelberg, Helin, K. & Issazadeh-Navikas, Shohreh, 16 Feb 2014, In: Nature Medicine.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FoxA1 in synergy with IFNβ controls PDL1 expression in anti-inflammatory T cells via binding to a 60-nucleotide region in the Pdl1 promoter
Hadi, M., Rasmussen, L. M., Kosicki, M., Carlsson, R. & Issazadeh-Navikas, Shohreh, Oct 2018, p. 596-597.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
FragBuilder: an efficient Python library to setup quantum chemistry calculations on peptides models
Christensen, A. S., Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2014, In: PeerJ. 2, e277.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Full cyclic coordinate descent: solving the protein loop closure problem in Cα space
Boomsma, Wouter & Hamelryck, Thomas Wim, 2005, In: BMC Bioinformatics. 6, 10 p., 159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functional annotation of human long noncoding RNAs via molecular phenotyping
Ramilowski, J. A., Yip, C. W., Agrawal, S., Chang, J-C., Ciani, Y., Kulakovskiy, I. V., Mendez, M., Ooi, J. L. C., Ouyang, J. F., Parkinson, N., Petri, A., Roos, L., Severin, J., Yasuzawa, K., Abugessaisa, I., Akalin, A., Antonov, I. V., Arner, E., Bonetti, A., Bono, H. & 96 others, , 2020, In: Genome Research. 30, 7, p. 1060-1072 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functions of m6A-YTH modules in plants: Lessons from high-throughput sequencing analyses
Porcelli, C., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 178 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
GISA: using Gauss Integrals to identify rare conformations in protein structures
Grønbæk, Christian, Hamelryck, Thomas Wim & Røgen, P., 2020, In: PeerJ. 8, 16 p., e9159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads
Zhao, X. & Sandelin, Albin Gustav, 2012, In: Bioinformatics. 28, 8, p. 1164-1165 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GWAS of lipids in Greenlanders finds association signals shared with Europeans and reveals an independent PCSK9 association signal
Senftleber, N. K., Andersen, M. K., Jørsboe, E., Stæger, Frederik Filip Vinggaard, Nøhr, A. K., Garcia Erill, Genís, Meisner, Jonas, Santander, Cindy, Balboa, Renzo Fidel Ferdinando, Gilly, A., Bjerregaard, P., Larsen, C. V. L., Grarup, Niels, Jørgensen, M. E., Zeggini, E., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2024, In: European Journal of Human Genetics. 32, p. 215–223 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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True single-molecule DNA sequencing of a pleistocene horse bone
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