Department of Biology

 

 
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  1. 2024
  2. Published

    Properties of vertebrate predator–prey networks in the high Arctic

    Abrham, M., Norén, K., Bartolomé Filella, J., Angerbjörn, A., Lecomte, N., Chrzanová Pecnerová, Patrícia, Freire, S. & Dalerum, F., 2024, In: Ecology and Evolution. 14, 6, 13 p., e11470.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Light drives nitrogen fixation in tropical montane cloud forests in Costa Rica

    Alvarenga, Danillo Oliveira, Avila Clasen, Lina, Thomsen, A. M. R., Andersen, R. F. & Rousk, Kathrin, 2024, In: The Science of the Total Environment. 940, 8 p., 173631.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. E-pub ahead of print

    Importance of integrating mixoplankton into marine ecosystem policy and management—Examples from the Marine Strategy Framework Directive

    Anschütz, A., Maselli, Maira, Traboni, C., Boon, A. R. & Stolte, W., 2024, (E-pub ahead of print) In: Integrated Environmental Assessment and Management.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Effects of ethanol or ethylene glycol exposure on PPARγ and aromatase expression in adipose tissue

    Ardenkjær-Skinnerup, J., Saar, Daniel, Christiansen, S., Svingen, T., Hadrup, N., Brown, K. A., Emanuelli, Brice, Kragelund, Birthe Brandt, Ravn-Haren, G. & Vogel, U., 2024, In: Biochemistry and Biophysics Reports. 38, 9 p., 101742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    PPARγ antagonists induce aromatase transcription in adipose tissue cultures

    Ardenkjær-Skinnerup, J., Saar, Daniel, Petersen, Patricia Stephanie S, Pedersen, M., Svingen, T., Kragelund, Birthe Brandt, Hadrup, N., Ravn-Haren, G., Emanuelli, Brice, Brown, K. A. & Vogel, U., 2024, In: Biochemical Pharmacology. 222, 13 p., 116095.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    MacroLoops for microRNAs: shall we revise the maximum allowed size?

    Arribas Hernandez, Laura, 2024, In: The Plant Cell. 36, 5, p. 1572-1573 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  9. Published

    Seafloor primary production in a changing Arctic Ocean

    Attard, K., Singh, R. K., Gattuso, J. P., Filbee-Dexter, K., Krause-Jensen, D., Kühl, Michael, Sejr, M. K., Archambault, P., Babin, M., Bélanger, S., Berg, P., Glud, R. N., Hancke, K., Jänicke, S., Qin, J., Rysgaard, S., Sørensen, E. B., Tachon, F., Wenzhöfer, F. & Ardyna, M., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 11, 10 p., e2303366121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Spatially resolved analysis of microenvironmental gradient impact on cancer cell phenotypes

    Auxillos, Jamie Yam, Crouigneau, R., Li, Y. F., Dai, Yifan, Stigliani, Arnaud, Tavernaro, I., Resch-Genger, U., Sandelin, Albin Gustav, Marie, R. & Pedersen, Stine Helene Falsig, 2024, In: Science Advances. 10, 18, 17 p., eadn3448.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Choice of medium affects PBMC quantification, cell size, and downstream respiratory analysis

    Bager Christensen, I., Ribas, L., Moßhammer, Maria, Abrahamsen, Marie-Louise Brødsgaard, Kühl, Michael, Larsen, Steen, Dela, Flemming & Gillberg, Linn, 2024, In: Mitochondrion. 77, 7 p., 101890.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer

    Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

    Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Short- and long-term plant and microbial uptake of 15N-labelled urea in a mesic tundra heath, West Greenland

    Barthelemy, H., Nobel, L. A., Stark, S., Väisänen, M., Olofsson, J. & Michelsen, Anders, 2024, In: Polar Biology. 47, p. 1-15 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Phytoplankton community changes in relation to nutrient fluxes along a quasi-stationary front

    Bendtsen, Jørgen, Daugbjerg, Niels, Jensen, R. S., dbt998, dbt998, Nielsen, M. H., Hansen, J. L. S. & Richardson, Katherine, 2024, In: Marine Ecology - Progress Series. 727, p. 67-80 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The Arctic Plant Aboveground Biomass Synthesis Dataset

    Berner, L. T., Orndahl, K. M., Rose, M., Tamstorf, M., Arndal, M. F., Alexander, H. D., Humphreys, E. R., Loranty, M. M., Ludwig, S. M., Nyman, J., Juutinen, S., Aurela, M., Happonen, K., Mikola, J., Mack, M. C., Vankoughnett, M. R., Iversen, C. M., Salmon, V. G., Yang, D., Kumar, J. & 34 others, Grogan, P., Danby, R. K., Scott, N. A., Olofsson, J., Siewert, M. B., Deschamps, L., Lévesque, E., Maire, V., Morneault, A., Gauthier, G., Gignac, C., Boudreau, S., Gaspard, A., Kholodov, A., Bret-Harte, M. S., Greaves, H. E., Walker, D., Gregory, F. M., Michelsen, Anders, Kumpula, T., Villoslada, M., Ylänne, H., Luoto, M., Virtanen, T., Forbes, B. C., Hölzel, N., Epstein, H., Heim, R. J., Bunn, A., Holmes, R. M., Hung, J. K. Y., Natali, S. M., Virkkala, A. M. & Goetz, S. J., 2024, In: Scientific Data. 11, 1, 13 p., 305.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A pragmatic approach for integrating molecular tools into biodiversity conservation

    Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, Lacy, R. C., Laikre, L., Lo, N., Meek, M. H., Mergeay, J., Mittan-Moreau, C., Neaves, L. E., O'Brien, D., Ochieng, J. W., Ogden, R., Orozco-terWengel, P., Páez-Vacas, M., Pierson, J., Ralls, K., Shaw, R. E., Sogbohossou, E. A., Stow, A., Steeves, T., Vernesi, C., Watsa, M. & Segelbacher, G., 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Giraffe lineages are shaped by major ancient admixture events

    Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, Sinding, Mikkel Holger Strander, Muwanika, V., Masembe, C., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

    Bhoobalan, Yuvaraj, Xu, Shuanshuan, Martinez Alvarez, Laura, Karamycheva, S., Makarova, K. S., Koonin, E. V. & Peng, Xu, 2024, In: Nature Communications. 15, 1, 13 p., 3699.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

    Bittner, Meriel Jennifer, Bannon, C. C., Rowland, E., Sundh, J., Bertrand, E. M., Andersson, A. F., Paerl, R. W. & Riemann, Lasse, 2024, In: ISME communications. 4, 1, 16 p., ycad016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

    Bjarnason, S., McIvor, J. A. P., Prestel, Andreas, Demény, K. S., Bullerjahn, J. T., Kragelund, Birthe Brandt, Mercadante, D. & Heidarsson, P. O., 2024, In: Nature Communications. 15, 1, 16 p., 1445.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Protein variant effect prediction using machine learning

    Blaabjerg, Lasse Møller, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Multiple mutations in the Nav1.4 sodium channel of New Guinean toxic birds provide auto‐resistance to deadly batrachotoxin

    Bodawatta, Kasun Harshana, Hu, H., Schalk, F., Daniel, J. M., Maiah, G., Koane, B., Iova, B., Beemelmanns, C., Poulsen, Michael & Jønsson, Knud Andreas, 2024, In: Molecular Ecology. 33, 9, 14 p., e16878.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Multiparameter Sensing of Oxygen and pH at Biological Interfaces via Hyperspectral Imaging of Luminescent Sensor Nanoparticles

    Bognár, Z., Moßhammer, Maria, Brodersen, Kasper Elgetti, Bollati, Elena, Gyurcsányi, R. E. & Kühl, Michael, 2024, In: ACS Sensors. 9, 4, p. 1763-1774 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    High-resolution vision in pelagic polychaetes

    Bok, M. J., Macali, A. & Garm, Anders Lydik, 2024, In: Current Biology. 34, 7, p. R269-R270 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  27. Published

    Editorial: Optics and ecophysiology of coral reef organisms: volume II

    Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.

    Research output: Contribution to journal › Editorial › Research › peer-review

  28. Published

    Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

    Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The power of sound: Unravelling how acoustic communication shapes group dynamics

    Briefer, Elodie, Xie, Bing, Engesser, Sabrina, Sueur, C., Freeberg, T. M. & Brask, Josefine Bohr, 2024, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 379, 1905, 6 p., 20230182.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

    Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Field collections and environmental DNA surveys reveal topographic complexity of coral reefs as a predictor of cryptobenthic biodiversity across small spatial scales

    Brodnicke, O. B., Jensen, M. R., Thomsen, P. F., Brorly, T., Andersen, B. L., Knudsen, Steen Wilhelm, Præbel, K., Brandl, S. J., Sweet, M. J., Møller, Peter Rask & Worsaae, Katrine, 2024, In: Environmental DNA. 6, 3, 15 p., e545.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Hymenopteran parasitoids reared from European gall midges (Diptera, Cecidomyiidae)

    Bruun, Hans Henrik, Haarder, S., Buhl, P. N. & Askew, R. R., 2024, In: Biodiversity Data Journal. 12, 34 p., e118487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Protein kinase C-inhibition reduces critical weight loss and improves functional outcome after experimental subarachnoid haemorrhage

    Bömers, J. P., Holm, A., Kazantzi, Spyridoula, Edvinsson, L., Mathiesen, Tiit Illimar & Haanes, Kristian Agmund, 2024, In: Journal of Stroke and Cerebrovascular Diseases. 33, 7, 11 p., 107728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements

    Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli

    Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Retron-Eco1 assembles NAD+-hydrolyzing filaments that provide immunity against bacteriophages

    Carabias del Rey, Arturo, Camara, Sarah, Rodríguez Mestre, Mario, Lopéz-Méndez, B., Hendriks, Ivo Alexander, Zhao, Ruiliang, Pape, Tillmann Hanns, Fuglsang, Anders, Luk, S. H. C., Nielsen, Michael Lund, Pinilla Redondo, Rafael & Montoya, Guillermo, 2024, In: Molecular Cell. 84, 11, p. 2185-2202.e12 31 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    The nightscape of the Arctic winter shapes the diving behavior of a marine predator

    Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    An Exploration of Artificial Intelligence-Driven De Novo Peptide Sequencing: Towards Future Proteomics and Medicine

    Chang, Yuqi, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/Report › Ph.D. thesis › Research

  40. Published

    Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing

    Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya

    Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions

    Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Relationship between the female cervico-vaginal microbiome and women’s health

    Chen, Chen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 141 p.

    Research output: Book/Report › Ph.D. thesis › Research

  44. Published

    A new temperature-photoperiod coupled phenology module in LPJ-GUESS model v4.1: Optimizing estimation of terrestrial carbon and water processes

    Chen, S., Fu, Y. H., Li, M., Jia, Z., Cui, Y. & Tang, Jing, 2024, In: Geoscientific Model Development. 17, 7, p. 2509-2523 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. E-pub ahead of print

    International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis

    Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. E-pub ahead of print

    A data-driven genome annotation approach for cassava

    Chenna, Swetha, Ivanov, M., Nielsen, Tue Kjærgaard, Chalenko, Karina, Olsen, Evy, Jørgensen, Kirsten, Sandelin, Albin Gustav & Marquardt, Sebastian, 2024, (E-pub ahead of print) In: Plant Journal.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking

    Chio, U. S., Palovcak, E., Smith, A. A. A., Autzen, Henriette Elisabeth, Muñoz, E. N., Yu, Z., Wang, F., Agard, D. A., Armache, J. P., Narlikar, G. J. & Cheng, Y., 2024, In: Nature Communications. 15, 1, 12 p., 2225.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Drosophila activins adapt gut size to food intake and promote regenerative growth

    Christensen, Christian Fokdal, Laurichesse, Quentin Charles B, Loudhaief, Rihab, Colombani, Julien & Andersen, Ditte Skovaa, 2024, In: Nature Communications. 15, 1, 12 p., 273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Global N2O emissions from our planet: Which fluxes are affected by man, and can we reduce these?

    Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Light management by algal aggregates in living photosynthetic hydrogels

    Chua, S. T., Smith, A., Murthy, Swathi, Murace, M., Yang, H., Schertel, L., Kühl, Michael, Cicuta, P., Smith, A. G., Wangpraseurt, D. & Vignolini, S., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 23, 10 p., e2316206121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    PRKN-linked familial Parkinson’s disease: cellular and molecular mechanisms of disease-linked variants

    Clausen, L., Okarmus, J., Voutsinos, Vasileios, Meyer, M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Cellular and Molecular Life Sciences. 81, 1, 17 p., 223.

    Research output: Contribution to journal › Review › Research › peer-review

  52. Published

    A mutational atlas for Parkin proteostasis

    Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    The balance between accumulation and loss of soil organic matter in subarctic forest is related to ratios of saprotrophic, ecto- and ericoid mycorrhizal fungal guilds

    Clemmensen, K. E., Michelsen, Anders, Finlay, R. D. & Lindahl, B. D., 2024, In: Fungal Ecology. 71, 13 p., 101359.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. E-pub ahead of print

    Coexisting with carnivores: insights into local attitudes toward African wild dogs (Lycaon pictus) in the Maasai Mara, Kenya

    Cornu, L., Broekhuis, F., Kavwele, C. M., Mogensen, N., Sakat, D. & Briefer, Elodie, 2024, (E-pub ahead of print) In: Human Dimensions of Wildlife.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  55. Published

    A scoping review of the use of bioacoustics to assess various components of farm animal welfare

    Coutant, M., Villain, Avelyne Sylvie Marie & Briefer, Elodie, 2024, In: Applied Animal Behaviour Science. 275, 14 p., 106286.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. E-pub ahead of print

    MicroRNA 29 modulates β-cell mitochondrial metabolism and insulin secretion via underlying miR-29-OXPHOS complex pathways

    Cowan, E., Sun, J., Hamilton, Alexander, Ruhrmann, S., Karagiannopoulos, A., Westholm, E., Ofori, J. K., Luan, C., Zhang, E., Mulder, H. & Eliasson, L., 2024, (E-pub ahead of print) In: Acta Physiologica.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    GMMA Can Stabilize Proteins Across Different Functional Constraints

    Daffern, N., Johansson, Kristoffer Enøe, Baumer, Z. T., Robertson, N. R., Woojuh, J., Bedewitz, M. A., Davis, Z., Wheeldon, I., Cutler, S. R., Lindorff-Larsen, Kresten & Whitehead, T. A., 2024, In: Journal of Molecular Biology. 436, 11, 15 p., 168586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Accepted/In press

    Plocamiomonas psychrophila gen. et sp. nov. (Pelagophyceae, Heterokontophyta), an Arctic marine nanoflagellate characterized by microscopy, pigments and molecular phylogeny.

    Daugbjerg, Niels, Lara, C. H., Frøsig Gai, F. & Lovejoy, C., 2024, (Accepted/In press) In: European Journal of Phycology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata)

    Defourneaux, Eloïse Pauline Sarah, Herranz, Maria, Armenteros, M., Sørensen, Martin Vinther, Norenburg, J. L., Park, T. & Worsaae, Katrine, 2024, In: Scientific Reports. 14, 1, 20 p., 9296.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Contrasting effects of increasing dissolved iron on photosynthesis and O2  availability in the gastric cavity of two Mediterranean corals

    Dellisanti, Walter, Zhang, Qingfeng, Ferrier-pagès, C. & Kühl, Michael, 2024, In: PeerJ. 12, 24 p., e17259.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

    Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Recommendations for Bioinformatic Tools in lncRNA Research

    Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  63. Published

    The role of neighbour proximity and context on meerkat close call acoustic structure

    Driscoll, I., Briefer, Elodie & Manser, M. B., 2024, In: Animal Behaviour. 212, p. 113-126 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Structure of a metacommunity of urban bees: Species diversity and spatio-temporal modularity

    Dupont, Y. L., Greve, M. B., Madsen, Henning Bang, Rasmussen, C., Timóteo, S. & Olesen, J. M., 2024, In: Basic and Applied Ecology. 77, p. 45-56 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    NBR1-mediated selective autophagy of ARF7 modulates root branching

    Ebstrup, E., Ansbøl, Jeppe, Paez-Garcia, A., Culp, H., Chevalier, J., Clemmens, P., Coll, N. S., Moreno-Risueno, M. A. & Rodriguez, Eleazar, 2024, In: EMBO Reports. 25, p. 2571 - 2591 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Protocol for genomic recombineering in Yersinia ruckeri using CRISPR Cas12a coupled with the λ Red system

    Ejaz, Rooshanie Nadia, Taylor, Nicholas M I & Rebrova, Eva Maria, 2024, In: STAR Protocols. 5, 2, 17 p., 103014.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Cadmium accumulation in organisms from a spruce plantation amended with wood ash - an environmental risk?

    Ekelund, Flemming, Cruz-Paredes, C., Jørgensen, Christian Hviid Friis, Vestergård, M., Rasmussen, K. R., Mortensen, Louise Hindborg, Kindtler, Nikolaj Lunding, Rønn, Regin, Christensen, Søren, Johansen, Jesper Liengaard & Kjøller, Rasmus, 2024, In: Trees, Forests and People. 15, 6 p., 100499.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    AI Implementation and Capability Development in Manufacturing: An Action Research Case

    Eklöf, Jon, Snis, U. L., Hamelryck, Thomas Wim, Grima, A. & Rønning, Ola, 2024, Proceedings of the 57th Hawaii International Conference on System Sciences - HICSS 2024. Hawaii International Conference on System Sciences, 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  71. Published

    Identification of high-performing antibodies for the reliable detection of Tau proteoforms by Western blotting and immunohistochemistry

    Ellis, M. J., Lekka, C., Holden, K. L., Tulmin, H., Seedat, F., O’Brien, D. P., Dhayal, S., Zeissler, M. L., Knudsen, Jakob Grunnet, Kessler, B. M., Morgan, N. G., Todd, J. A., Richardson, S. J. & Stefana, M. I., 2024, In: Acta Neuropathologica. 147, 1, 38 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. E-pub ahead of print

    Multiple Pleistocene refugia for Arctic Bell‐Heather revealed with genomic analyses of modern and historic plants

    Elphinstone, C., Hernández, F., Todesco, M., Légaré, J., Cheung, W., Sokoloff, P. C., Hofgaard, A., Christiansen, C. T., Frei, E. R., Lévesque, E., Daskalova, G. N., Thomas, H. J. D., Myers‐smith, I. H., Harris, J. A., Saarela, J. M., May, J. L., Obst, J., Boike, J., Clark, K., Macintosh, K. & 13 others, Betway‐may, K. R., Case, L., Björkman, M. P., Moody, M. L., Schmidt, N. M., Mølgaard, Per, Björk, R. G., Hollister, R. D., Bull, R. D., Agger, S., Maire, V., Henry, G. H. R. & Rieseberg, L. H., 2024, (E-pub ahead of print) In: Journal of Biogeography.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Osmotic stress tolerance and transcriptomic response of Ramazzottius varieornatus (Eutardigrada: Ramazzottiidae) following tun formation

    Emdee, N., Møbjerg, A., Grollmann, M. M. & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 220-229 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Early life factors and oral microbial signatures define the risk of caries in a Swedish cohort of preschool children

    Eriksen, C., Boustedt, K., Sonne, Si Brask, Dahlgren, J., Kristiansen, Karsten, Twetman, Svante, Brix, S. & Roswall, J., 2024, In: Scientific Reports. 14, 1, 13 p., 8463.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

    Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium Crocosphaera

    Filella, A., Umbricht, J., Klett, A., Vogts, A., Vannier, T., Grosso, O., Voss, M., Riemann, Lasse & Benavides, M., 2024, In: Limnology and Oceanography Letters. 9, 3, p. 296-306 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  79. Published

    Removal from the wild endangers the once widespread long-tailed macaque

    Gamalo, L. E., Ilham, K., Jones-Engel, L., Gill, M., Sweet, R., Aldrich, B., Phiapalath, P., Van Bang, T., Ahmed, T., Kite, S., Paramasivam, S., Seiha, H., Zainol, M. Z., Nielsen, D. R. K., Ruppert, N., Fuentes, A. & Hansen, Malene Friis, 2024, In: American Journal of Primatology. 86, 3, 10 p., e23547.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  80. Published

    GLP-1 metabolite GLP-1(9–36) is a systemic inhibitor of mouse and human pancreatic islet glucagon secretion

    Gandasi, N. R., Gao, R., Kothegala, L., Pearce, A., Santos, C., Acreman, S., Basco, D., Benrick, A., Chibalina, M. V., Clark, A., Guida, C., Harris, M., Johnson, P. R. V., Knudsen, J. G., Ma, J., Miranda, C., Shigeto, M., Tarasov, A. I., Yeung, H. Y., Thorens, B. & 5 others, Asterholm, I. W., Zhang, Q., Ramracheya, R., Ladds, G. & Rorsman, P., 2024, In: Diabetologia. 67, p. 528–546 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Characterizing glucokinase variant mechanisms using a multiplexed abundance assay

    Gersing, S., Schulze, Thea Klarsø, Cagiada, Matteo, Stein, Amelie, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Genome Biology. 25, 1, 22 p., 98.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Imaging of extracellular and intracellular ATP in pancreatic beta cells reveals correlation between glucose metabolism and purinergic signalling

    Ghiasi, S. M., Christensen, Nynne, Pedersen, Per Amstrup, Skovhøj, Emil Zeng & Novak, Ivana, 2024, In: Cellular Signalling. 117, 12 p., 111109.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Destabilization and Degradation of a Disease-Linked PGM1 Protein Variant

    Gouliaev, F., Jonsson, Nicolas, Gersing, S., Lisby, Michael, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Biochemistry. 63, 11, p. 1423–1433 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Cellular and molecular mechanisms of aspartoacylase and its role in Canavan disease

    Grønbæk-Thygesen, Martin & Hartmann-Petersen, Rasmus, 2024, In: Cell and Bioscience. 14, 1, 33 p., 45.

    Research output: Contribution to journal › Review › Research › peer-review

  85. Published

    Deep mutational scanning reveals a correlation between degradation and toxicity of thousands of aspartoacylase variants

    Grønbæk-Thygesen, Martin, Voutsinos, Vasileios, Johansson, Kristoffer Enøe, Schulze, Thea Klarsø, Cagiada, Matteo, Pedersen, Line, Clausen, L., Nariya, S., Powell, R. L., Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 18 p., 4026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Analysis of Genomic and Transcriptomic Signatures Associated with Amyotrophic Lateral Sclerosis

    Guan, Liping, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/Report › Ph.D. thesis › Research

  87. Published

    Population size and social structure of lions in a west African protected area

    Gueye, M., Pellaton, R., Van Cauteren, D., Mengual, L., Van Dongen, S., Leirs, H., Bertola, Laura, Faye, P. M., Diop, B., Diop, M. M., Kanté, A. & de Iongh, H., 2024, In: African Journal of Ecology. 62, 1, 11 p., e13226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Short-term fate of nitrogen fixed by moss-cyanobacteria associations under different rainfall regimes

    Guo, S., Avila Clasen, Lina & Rousk, Kathrin, 2024, In: Basic and Applied Ecology. 79, p. 9-16 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases

    Guo, Zongxin, Orädd, F., Bågenholm, Viktoria, Grønberg, C., Ma, J. F., Ott, P., Wang, Y., Andersson, M., Pedersen, Per Amstrup, Wang, Kaituo & Gourdon, Pontus Emanuel, 2024, In: Nature Communications. 15, 1, 16 p., 2690.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis

    Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Mechanisms of Systemic Osmoregulation in Insects

    Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

    Research output: Contribution to journal › Review › Research › peer-review

  93. Published

    Plant trait and vegetation data along a 1314 m elevation gradient with fire history in Puna grasslands, Perú

    Halbritter, A. H., Vandvik, V., Cotner, S. H., Farfan-Rios, W., Maitner, B. S., Michaletz, S. T., Oliveras Menor, I., Telford, R. J., Ccahuana, A., Cruz, R., Sallo-Bravo, J., Santos-Andrade, P. E., Vilca-Bustamante, L. L., Castorena, M., Chacón-Labella, J., Christiansen, C. T., Duran, S. M., Egelkraut, D. D., Gya, R., Haugum, S. V. & 42 others, Seltzer, L., Silman, M. R., Strydom, T., Spiegel, M. P., Barros, A., Birkeli, K., Boakye, M., Chiappero, F., Chmurzynski, A., Garen, J. C., Gaudard, J., Gauthier, T. L. J., Geange, S. R., Gonzales, F. N., Henn, J. J., Hošková, K., Isaksen, A., Jessup, L. H., Johnson, W., Kusch, E., Lepley, K., Lift, M., Martyn, T. E., Muñoz Mazon, M., Middleton, S. L., Quinteros Casaverde, N. L., Navarro, J., Zepeda, V., Ocampo-Zuleta, K., Palomino-Cardenas, A. C., Pastor Ploskonka, S., Pierfederici, M. E., Pinelli, V., Rickenback, J., Roos, R. E., Rui, H. S., Sanchez Diaz, E., Sánchez-Tapia, A., Smith, A., Urquiaga-Flores, E., von Oppen, J. & Enquist, B. J., 2024, In: Scientific Data. 11, 1, 18 p., 225.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination

    Hansen, A. L., Theisen, Frederik Friis, Crehuet, R., Marcos, E., Aghajari, N. & Willemoës, Martin, 2024, In: ACS Synthetic Biology. 13, 3, p. 862-875 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Editorial overview: New and revitalized old targets in metabolic disease

    Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.

    Research output: Contribution to journal › Editorial › Research › peer-review

  96. Published

    Pulmonary maternal immune activation does not cross the placenta but leads to fetal metabolic adaptation

    Hansen, Signe Schmidt Kjølner, Krautz, Robert, Rago, D., Havelund, J., Stigliani, Arnaud, Færgeman, N. J., Prézelin, A., Rivière, J., Couturier-Tarrade, A., Akimov, V., Blagoev, B., Elfving, B., Neess, D., Vogel, U., Khodosevich, Konstantin, Hougaard, Karin Sørig & Sandelin, Albin Gustav, 2024, In: Nature Communications. 15, 24 p., 4711.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. E-pub ahead of print

    High N6-methyladenosine-activated TCEAL8 mRNA is a novel pancreatic cancer marker

    Hara, T., Meng, S., Sato, H., Tatekawa, S., Sasaki, K., Takeda, Y., Tsuji, Y., Arao, Y., Ofusa, K., Kitagawa, T., Yamada, D., Takahashi, H., Kobayashi, S., Motooka, D., Suzuki, Y., Rennie, S., Uchida, S., Mori, M., Ogawa, K., Doki, Y. & 2 others, Eguchi, H. & Ishii, H., 2024, (E-pub ahead of print) In: Cancer Science.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    The tick Ixodes scapularis has five different GPCRs specifically activated by ACP (adipokinetic hormone/corazonin-related peptide)

    Hauser, Frank, Stebegg, M., Al-Ribaty, T., Petersen, L. B., Møller, M., Drag, Markus Hodal, Sigurdsson, H. H., Vilhelm, M. J., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2024, In: Biochemical and Biophysical Research Communications. 717, 7 p., 149992.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Obituary: Claus Nielsen (March 28th, 1938–January 18th, 2024)

    Hay-Schmidt, Anders & Høeg, Jens Thorvald, 2024, In: Zoomorphology. 143, p. 1-3

    Research output: Contribution to journal › Journal article › Research

  100. Published

    Crop management strategies shape the shared temporal dynamics of soil food web structure and functioning

    Hedde, M., Coudrain, V., Maron, P. A., Chauvat, M., Cheviron, N., Ekelund, Flemming, Mougin, C., Mary, B., Recous, S., Villenave, C. & Thébault, E., 2024, In: Agriculture, Ecosystems and Environment. 370, 11 p., 109058.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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