Department of Biology

 

 
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  1. 2023
  2. Published

    基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力

    Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    On the origin and evolution of RNA editing in metazoans

    Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma

    Zhang, R., Feng, Y., Ma, W., Guo, Y., Luo, M., Li, Y., Zang, Y., Dong, X., Lu, S., Guo, Q., Xu, Q., Chen, H., Li, Y., Liu, L., CHEN, Ao, Chen, G. & Xu, X., 2023, In: Fundamental Research. 3, 4, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment

    Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization

    Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, Yang, H., Wang, J., Seim, I. & Fan, G., 2023, In: Nature Communications. 14, 1, 15 p., 5630.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Metagenome-Genome wide association studies for analysis of complex diseases

    Zhang, T., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 39 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Sea animal colonies enhance carbonyl sulfide emissions from coastal Antarctic tundra

    Zhang, W., Zhu, R., Jiao, Yi, Rhew, R. C., Sun, B., Rinnan, Riikka & Zhou, Z., 2023, In: Communications Earth and Environment. 4, 1, 11 p., 326.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

    Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Recent decrease of the impact of tropical temperature on the carbon cycle linked to increased precipitation

    Zhang, Wenmin, Schurgers, Guy, Peñuelas, J., Fensholt, Rasmus, Yang, H., Tang, Jing, Tong, Xiaowei, Ciais, P. & Brandt, Martin Stefan, 2023, In: Nature Communications. 14, 1, 9 p., 965.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report

    Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification

    Zhang, Z., Duan, C., Liu, Y., Li, A., Hu, X., Chen, J., Zhang, S., Li, X., Che, R., Li, S., Ekelund, Flemming & Cui, X., 2023, In: Bioresource Technology. 380, 10 p., 129014.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Next generation sequencing facilitates the mining of genomic information in a clinical pathogen (Clostridium difficile) and the viromes of wildlife bats and rodents

    Zhao, Hailong, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 127 p.

    Research output: Book/Report › Ph.D. thesis › Research

  14. Published

    The effect of experimental warming on fine root functional traits of woody plants: Data synthesis

    Zhao, X., Tian, Q., Michelsen, Anders, Lu, M., Ren, B., Huang, L. & Zhao, R., 2023, In: Science of the Total Environment. 894, 9 p., 165003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The effects of mycorrhizal associations on fine root decomposition in temperate and (sub)tropical forests

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Zhao, R., Yuan, X., Chen, L., Zuo, J. & Liu, F., 2023, In: Plant and Soil. 487, 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations

    Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Expression of genes and enzymes involved in ovarian steroidogenesis in relation to human follicular development

    Zheng, M., tcg964, tcg964, Rasmussen, F. R., Cadenas, J., Christensen, Søren Tvorup & Mamsen, L. S., 2023, In: Frontiers in Endocrinology. 14, 17 p., 1268248.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Eighty million years of rapid evolution of the primate Y chromosome

    Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, Wu, D. D., Schierup, M. H. & KU, thw266, 2023, In: Nature Ecology and Evolution. 7, 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

    Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

    de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Variation of extrachromosomal circular DNA in cancer cell lines

    dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Geochemical landscapes as drivers of wildlife reproductive success: Insights from a high-Arctic ecosystem

    van Beest, F. M., Schmidt, N. M., Stewart, L., Hansen, L. H., Michelsen, Anders, Mosbacher, J. B., Gilbert, H., Le Roux, G. & Hansson, S. V., 2023, In: Science of the Total Environment. 903, 12 p., 166567.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Deciphering regulatory mechanisms underlying gene co-activity

    van Duin, Lucas, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis

    von Eyben, F. E., Kristiansen, Karsten, Kapp, D. S., Hu, R., Preda, O. & Nogales, F. F., 2023, In: International Journal of Molecular Sciences. 24, 4, 28 p., 4148.

    Research output: Contribution to journal › Review › Research › peer-review

  26. Published

    Glacial meltwater and seasonality influence community composition of diazotrophs in Arctic coastal and open waters

    Winberg von Friesen, Lisa, Paulsen, M. L., Müller, O., Gründger, F. & Riemann, Lasse, 2023, In: F E M S Microbiology Ecology. 99, 8, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Integrative taxonomy of Central European Planetella (Diptera: Cecidomyiidae) indicates high species diversity, intraspecific variation and low host specificity

    Ševčík, J., Hippa, H., Burdíková, N., Sopuch, K., Skuhravá, M. & Bruun, Hans Henrik, 2023, In: Acta Entomologica Musei Nationalis Pragae. 63, 2, p. 413-450 38 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2022
  29. Published

    The mechanisms behind degradation of misfolded proteins

    Abildgaard, A. B., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

    Afgan, E., Nekrutenko, A., Grüning, B. A., Blankenberg, D., Goecks, J., Schatz, M. C., Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., Desanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B. A. & 85 others, Langhorst, B. W., Carr, B., Raubenolt, B. A., Hyde, C. J., Bromhead, C. J., Barnett, C. B., Royaux, C., Gallardo, C., Blankenberg, D., Fornika, D. J., Baker, D., Bouvier, D., Clements, D., De Lima Morais, D. A., Tabernero, D. L., Lariviere, D., Nasr, E., Afgan, E., Zambelli, F., Heyl, F., Psomopoulos, F., Coppens, F., Price, G. R., Cuccuru, G., Corguillé, G. L., Von Kuster, G., Akbulut, G. G., Rasche, H., Hans-Rudolf, H., Eguinoa, I., Makunin, I., Ranawaka, I. J., Taylor, J. P., Joshi, J., Hillman-Jackson, J., Chilton, J. M., Kamali, K., Suderman, K., Poterlowicz, K., Yvan, L. B., Lopez-Delisle, L., Sargent, L., Bassetti, M. E., Tangaro, M. A., Van Den Beek, M., Cech, M., Bernt, M., Fahrner, M., Tekman, M., Föll, M. C., Schatz, M. C., Crusoe, M. R., Roncoroni, M., Kucher, N., Coraor, N., Stoler, N., Rhodes, N., Soranzo, N., Pinter, N., Goonasekera, N. A., Moreno, P. A., Videm, P., Melanie, P., Mandreoli, P., Jagtap, P. D., Gu, Q., Weber, R. J. M., Lazarus, R., Vorderman, R. H. P., Hiltemann, S., Golitsynskiy, S., Garg, S., Bray, S. A., Gladman, S. L., Leo, S., Mehta, S. P., Griffin, T. J., Jalili, V., Yves, V., Wen, V., Nagampalli, V. K., Bacon, W. A., De Koning, W., Maier, W. & Briggs, P. J., 2022, In: Nucleic Acids Research. 50, W1, p. W345-W351 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Telomeric C-circles localize at nuclear pore complexes in Saccharomyces cerevisiae

    Aguilera, P., Dubarry, M., Hardy, J., Lisby, Michael, Simon, M. & Géli, V., 2022, In: EMBO Journal. 41, 6, 14 p., e108736.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Tripartite Symbiotic Digestion of Lignocellulose in the Digestive System of a Fungus-Growing Termite

    Ahmad, F., Yang, G., Zhu, Y., Poulsen, Michael, Li, W., Yu, T. & Mo, J., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e01234-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems

    Ahmerkamp, S., Jalaluddin, F. M., Cui, Y., Brumley, D. R., Pacherres, Cesar, Berg, J. S., Stocker, R., Kuypers, M. M. M., Koren, K. & Behrendt, L., 2022, In: Cell Reports Methods. 2, 5, 18 p., 100216.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A structural biology community assessment of AlphaFold2 applications

    Akdel, M., Pires, D. E., Porta Pardo, E., Jänes, J., Zalevsky, A. O., Meszaros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., Shenoy, A., Zhu, W., Kundrotas, P., Serra, V. R., Rodrigues, C. H. M., Dunham, A. S., Burke, D., Borkakoti, N., Velankar, S., Frost, A. & 14 others, Basquin, J., Lindorff-Larsen, Kresten, Bateman, A., Kajava, A., Valencia, A., Ovchinnikov, S., Durairaj, J., Ascher, D. B., Thornton, J. M., Davey, N. E., Stein, Amelie, Elofsson, A., Croll, T. & Beltrao, P., 2022, In: Nature Structural & Molecular Biology. 29, 11, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Methods for fighting emerging pathogens

    Alcantara, L. C. J., Amenga-Etego, L., Andersson, Robin, Bhaumik, M., Choi, Y. K., Decaluwe, H., Geoghegan, J., Haagmans, B. L., López, S., Mukhtar, M. M., Nelwan, E., Rahal, E. A., Sato, K., Sklan, E. H. & Fang, Y. S. C., 2022, In: Nature Methods. 19, 4, p. 395-397 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  37. Published

    Deoxygenation lowers the thermal threshold of coral bleaching: [Inkl. Correction]

    Alderdice, R., Perna, G., Cárdenas, A., Hume, B. C. C., Wolf, M., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Scientific Reports. 12, 14 p., 18273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience

    Alderdice, R., Hume, B. C. C., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Frontiers in Marine Science. 9, 14 p., 834332.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Hypoxia as a physiological cue and pathological stress for coral larvae

    Alderdice, R., Pernice, M., Cárdenas, A., Hughes, D. J., Harrison, P. L., Boulotte, N., Chartrand, K., Kühl, Michael, Suggett, D. J. & Voolstra, C. R., 2022, In: Molecular Ecology. 31, 2, p. 571-587 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A family of conserved bacterial virulence factors dampens interferon responses by blocking calcium signaling

    Alphonse, N., Wanford, J. J., Voak, A. A., Gay, J., Venkhaya, S., Burroughs, O., Mathew, S., Lee, T., Evans, S. L., Zhao, W., Frowde, K., Alrehaili, A., Dickenson, R. E., Munk, M., Panina, S., Mahmood, I. F., Llorian, M., Stanifer, M. L., Boulant, S., Berchtold, M. W. & 4 others, Bergeron, J. R. C., Wack, A., Lesser, C. F. & Odendall, C., 2022, In: Cell. 185, 13, p. 2354-2369.e17

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Unraveling host - microbe interactions and ecosystem functions in moss-bacteria symbioses

    Alvarenga, Danillo Oliveira & Rousk, Kathrin, 2022, In: Journal of Experimental Botany. 73, 13, p. 4473–4486 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  42. Published

    An adipose lncRAP2-Igf2bp2 complex enhances adipogenesis and energy expenditure by stabilizing target mRNAs

    Alvarez-Dominguez, J. R., Winther, Sally, Hansen, Jacob B., Lodish, H. F. & Knoll, M., 2022, In: iScience. 25, 1, 25 p., 103680.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Ecdysone coordinates plastic growth with robust pattern in the developing wing

    Alves, A. N., Oliveira, M. M., Koyama, Takashi, Shingleton, A. & Mirth, C. K., Mar 2022, In: eLife. 11, 24 p., e72666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    C-locked analogs of the antimicrobial peptide BP214

    Andersen, I. K. L., Thomsen, T. T., Rashid, J., Bobak, T. R., Oddo, A., Franzyk, Henrik, Løbner-Olesen, Anders & Hansen, Paul Robert, 2022, In: Antibiotics. 11, 8, 10 p., 1080.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Loss of sucrase-isomaltase function increases acetate levels and improves metabolic health in Greenlandic cohorts

    Andersen, M. K., Skotte, L., Jørsboe, E., Polito, R., Stæger, F. F., Aldiss, P., Hanghøj, K., Waples, R. K., Santander, C. G., Grarup, N., Dahl-Petersen, I. K., Diaz, L. J., Overvad, M., Senftleber, N. K., Søborg, B., Larsen, C. V. L., Lemoine, C., Pedersen, O., Feenstra, B., Bjerregaard, P. & 9 others, Melbye, M., Jørgensen, M. E., Færgeman, N. J., Koch, A., Moritz, Thomas, Gillum, M. P., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2022, In: Gastroenterology. 162, 4, p. 1171-1182.e3

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Patterns of free amino acids in tundra soils reflect mycorrhizal type, shrubification, and warming

    Andresen, L. C., Bodé, S., Björk, R. G., Michelsen, Anders, Aerts, R., Boeckx, P., Cornelissen, J. H. C., Klanderud, K., van Logtestijn, R. S. P. & Rütting, T., 2022, In: Mycorrhiza. 32, 3-4, p. 305-313 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights

    Andrew DeWoody, J., Jeon, J. Y., Bickham, J. W., Heenkenda, E. J., Janjua, S., Lamka, G. F., Mularo, A. J., Black, A., Brüniche-Olsen, Anna & Willoughby, J. R., 2022, In: PNAS. 119, 35, 2 p., e2210685119.

    Research output: Contribution to journal › Letter › Research › peer-review

  48. Published

    Germin like protein genes exhibit modular expression during salt and drought stress in elite rice cultivars

    Anum, J., O'Shea, Charlotte, Hyder, M. Z., Farrukh, S., Skriver, Karen, Malik, S. I. & Yasmin, T., 2022, In: Molecular Biology Reports. 49, 1, p. 293-302 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Sodium, Glucose and Dysregulated Glucagon Secretion: The Potential of Sodium Glucose Transporters

    Armour, Sarah Louise, Frueh, A. & Knudsen, Jakob Grunnet, 2022, In: Frontiers in Pharmacology. 13, 6 p., 837664.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    A unifying model for extrachromosomal circular DNA load in eukaryotic cells

    Arrey Tané, Gerard, Keating, S. T. & Regenberg, Birgitte, 2022, In: Seminars in Cell and Developmental Biology. 128, p. 40-50 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  51. Published

    The rebellious circles: Phenotypic consequences of circular DNAs in eukaryotic genomes

    Arrey Tané, Gerard, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 200 p.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    A DNA barcode survey of insect biodiversity in Pakistan

    Ashfaq, M., Khan, A. M., Rasool, A., Akhtar, S., Nazir, N., Ahmed, N., Manzoor, F., Sones, J., Perez, K., Sarwar, G., Khan, A. A., Akhter, M., Saeed, S., Sultana, R., Tahir, H. M., Rafi, M. A., Iftikhar, R., Naseem, M. T., Masood, M., Tufail, M. & 8 others, Kumar, S., Afzal, S., McKeown, J., Samejo, A. A., Khaliq, I., D'Souza, M. L., Mansoor, S. & Hebert, P. D. N., 2022, In: PeerJ. 10, 19 p., e13267.

    Research output: Contribution to journal › Journal article › Research › peer-review

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