Department of Biology

 

 
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  1. 2024
  2. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. E-pub ahead of print

    Importance of integrating mixoplankton into marine ecosystem policy and management—Examples from the Marine Strategy Framework Directive

    Anschütz, A., Maselli, Maira, Traboni, C., Boon, A. R. & Stolte, W., 2024, (E-pub ahead of print) In: Integrated Environmental Assessment and Management.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    PPARγ antagonists induce aromatase transcription in adipose tissue cultures

    Ardenkjær-Skinnerup, J., Saar, Daniel, Petersen, Patricia Stephanie S, Pedersen, M., Svingen, T., Kragelund, Birthe Brandt, Hadrup, N., Ravn-Haren, G., Emanuelli, Brice, Brown, K. A. & Vogel, U., 2024, In: Biochemical Pharmacology. 222, 13 p., 116095.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    MacroLoops for microRNAs: shall we revise the maximum allowed size?

    Arribas Hernandez, Laura, 2024, In: The Plant Cell. 36, 5, p. 1572-1573 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  6. Published

    Seafloor primary production in a changing Arctic Ocean

    Attard, K., Singh, R. K., Gattuso, J. P., Filbee-Dexter, K., Krause-Jensen, D., Kühl, Michael, Sejr, M. K., Archambault, P., Babin, M., Bélanger, S., Berg, P., Glud, R. N., Hancke, K., Jänicke, S., Qin, J., Rysgaard, S., Sørensen, E. B., Tachon, F., Wenzhöfer, F. & Ardyna, M., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 11, 10 p., e2303366121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Spatially resolved analysis of microenvironmental gradient impact on cancer cell phenotypes

    Auxillos, Jamie Yam, Crouigneau, R., Li, Y. F., Dai, Yifan, Stigliani, Arnaud, Tavernaro, I., Resch-Genger, U., Sandelin, Albin Gustav, Marie, R. & Pedersen, Stine Helene Falsig, 2024, In: Science Advances. 10, 18, 17 p., eadn3448.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer

    Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

    Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Short- and long-term plant and microbial uptake of 15N-labelled urea in a mesic tundra heath, West Greenland

    Barthelemy, H., Nobel, L. A., Stark, S., Väisänen, M., Olofsson, J. & Michelsen, Anders, 2024, In: Polar Biology. 47, p. 1-15 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Phytoplankton community changes in relation to nutrient fluxes along a quasi-stationary front

    Bendtsen, Jørgen, Daugbjerg, Niels, Jensen, R. S., dbt998, dbt998, Nielsen, M. H., Hansen, J. L. S. & Richardson, Katherine, 2024, In: Marine Ecology - Progress Series. 727, p. 67-80 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    The Arctic Plant Aboveground Biomass Synthesis Dataset

    Berner, L. T., Orndahl, K. M., Rose, M., Tamstorf, M., Arndal, M. F., Alexander, H. D., Humphreys, E. R., Loranty, M. M., Ludwig, S. M., Nyman, J., Juutinen, S., Aurela, M., Happonen, K., Mikola, J., Mack, M. C., Vankoughnett, M. R., Iversen, C. M., Salmon, V. G., Yang, D., Kumar, J. & 34 others, Grogan, P., Danby, R. K., Scott, N. A., Olofsson, J., Siewert, M. B., Deschamps, L., Lévesque, E., Maire, V., Morneault, A., Gauthier, G., Gignac, C., Boudreau, S., Gaspard, A., Kholodov, A., Bret-Harte, M. S., Greaves, H. E., Walker, D., Gregory, F. M., Michelsen, Anders, Kumpula, T., Villoslada, M., Ylänne, H., Luoto, M., Virtanen, T., Forbes, B. C., Hölzel, N., Epstein, H., Heim, R. J., Bunn, A., Holmes, R. M., Hung, J. K. Y., Natali, S. M., Virkkala, A. M. & Goetz, S. J., 2024, In: Scientific Data. 11, 1, 13 p., 305.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A pragmatic approach for integrating molecular tools into biodiversity conservation

    Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, Lacy, R. C., Laikre, L., Lo, N., Meek, M. H., Mergeay, J., Mittan-Moreau, C., Neaves, L. E., O'Brien, D., Ochieng, J. W., Ogden, R., Orozco-terWengel, P., Páez-Vacas, M., Pierson, J., Ralls, K., Shaw, R. E., Sogbohossou, E. A., Stow, A., Steeves, T., Vernesi, C., Watsa, M. & Segelbacher, G., 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Giraffe lineages are shaped by major ancient admixture events

    Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, Sinding, Mikkel Holger Strander, Muwanika, V., Masembe, C., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

    Bhoobalan, Yuvaraj, Xu, Shuanshuan, Martinez Alvarez, Laura, Karamycheva, S., Makarova, K. S., Koonin, E. V. & Peng, Xu, 2024, In: Nature Communications. 15, 1, 13 p., 3699.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

    Bittner, Meriel Jennifer, Bannon, C. C., Rowland, E., Sundh, J., Bertrand, E. M., Andersson, A. F., Paerl, R. W. & Riemann, Lasse, 2024, In: ISME communications. 4, 1, 16 p., ycad016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

    Bjarnason, S., McIvor, J. A. P., Prestel, Andreas, Demény, K. S., Bullerjahn, J. T., Kragelund, Birthe Brandt, Mercadante, D. & Heidarsson, P. O., 2024, In: Nature Communications. 15, 1, 16 p., 1445.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Protein variant effect prediction using machine learning

    Blaabjerg, Lasse Møller, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Multiple mutations in the Nav1.4 sodium channel of New Guinean toxic birds provide auto‐resistance to deadly batrachotoxin

    Bodawatta, Kasun Harshana, Hu, H., Schalk, F., Daniel, J. M., Maiah, G., Koane, B., Iova, B., Beemelmanns, C., Poulsen, Michael & Jønsson, Knud Andreas, 2024, In: Molecular Ecology. 33, 9, 14 p., e16878.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Multiparameter Sensing of Oxygen and pH at Biological Interfaces via Hyperspectral Imaging of Luminescent Sensor Nanoparticles

    Bognár, Z., Moßhammer, Maria, Brodersen, Kasper Elgetti, Bollati, Elena, Gyurcsányi, R. E. & Kühl, Michael, 2024, In: ACS Sensors. 9, 4, p. 1763-1774 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    High-resolution vision in pelagic polychaetes

    Bok, M. J., Macali, A. & Garm, Anders Lydik, 2024, In: Current Biology. 34, 7, p. R269-R270 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  23. Published

    Editorial: Optics and ecophysiology of coral reef organisms: volume II

    Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.

    Research output: Contribution to journal › Editorial › Research › peer-review

  24. Published

    Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

    Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

    Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Hymenopteran parasitoids reared from European gall midges (Diptera, Cecidomyiidae)

    Bruun, Hans Henrik, Haarder, S., Buhl, P. N. & Askew, R. R., 2024, In: Biodiversity Data Journal. 12, 34 p., e118487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Protein kinase C-inhibition reduces critical weight loss and improves functional outcome after experimental subarachnoid haemorrhage

    Bömers, J. P., Holm, A., Kazantzi, Spyridoula, Edvinsson, L., Mathiesen, Tiit Illimar & Haanes, Kristian Agmund, 2024, In: Journal of Stroke and Cerebrovascular Diseases. 33, 7, 11 p., 107728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements

    Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.

    Research output: Book/Report › Ph.D. thesis › Research

  29. Published

    Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli

    Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The nightscape of the Arctic winter shapes the diving behavior of a marine predator

    Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    An Exploration of Artificial Intelligence-Driven De Novo Peptide Sequencing: Towards Future Proteomics and Medicine

    Chang, Yuqi, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/Report › Ph.D. thesis › Research

  33. Published

    Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing

    Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya

    Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions

    Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Relationship between the female cervico-vaginal microbiome and women’s health

    Chen, Chen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 141 p.

    Research output: Book/Report › Ph.D. thesis › Research

  37. Published

    A new temperature-photoperiod coupled phenology module in LPJ-GUESS model v4.1: Optimizing estimation of terrestrial carbon and water processes

    Chen, S., Fu, Y. H., Li, M., Jia, Z., Cui, Y. & Tang, Jing, 2024, In: Geoscientific Model Development. 17, 7, p. 2509-2523 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. E-pub ahead of print

    International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis

    Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking

    Chio, U. S., Palovcak, E., Smith, A. A. A., Autzen, Henriette Elisabeth, Muñoz, E. N., Yu, Z., Wang, F., Agard, D. A., Armache, J. P., Narlikar, G. J. & Cheng, Y., 2024, In: Nature Communications. 15, 1, 12 p., 2225.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Drosophila activins adapt gut size to food intake and promote regenerative growth

    Christensen, Christian Fokdal, Laurichesse, Quentin Charles B, Loudhaief, Rihab, Colombani, Julien & Andersen, Ditte Skovaa, 2024, In: Nature Communications. 15, 1, 12 p., 273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Global N2O emissions from our planet: Which fluxes are affected by man, and can we reduce these?

    Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.

    Research output: Contribution to journal › Review › Research › peer-review

  42. Published

    A mutational atlas for Parkin proteostasis

    Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Type XXIII collagen

    Crespo Bravo, Marina, Kehlet, S. N., Jessen, H. & Karsdal, M. A., 2024, Biochemistry of Collagens, Laminins and Elastin: Structure, Function and Biomarkers. 3 ed. Elsevier, p. 199-202 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  44. Published

    GMMA Can Stabilize Proteins Across Different Functional Constraints

    Daffern, N., Johansson, Kristoffer Enøe, Baumer, Z. T., Robertson, N. R., Woojuh, J., Bedewitz, M. A., Davis, Z., Wheeldon, I., Cutler, S. R., Lindorff-Larsen, Kresten & Whitehead, T. A., 2024, In: Journal of Molecular Biology. 436, 11, 15 p., 168586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Accepted/In press

    Plocamiomonas psychrophila gen. et sp. nov. (Pelagophyceae, Heterokontophyta), an Arctic marine nanoflagellate characterized by microscopy, pigments and molecular phylogeny.

    Daugbjerg, Niels, Lara, C. H., Frøsig Gai, F. & Lovejoy, C., 2024, (Accepted/In press) In: European Journal of Phycology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata)

    Defourneaux, Eloïse Pauline Sarah, Herranz, Maria, Armenteros, M., Sørensen, Martin Vinther, Norenburg, J. L., Park, T. & Worsaae, Katrine, 2024, In: Scientific Reports. 14, 1, 20 p., 9296.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

    Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Recommendations for Bioinformatic Tools in lncRNA Research

    Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    The role of neighbour proximity and context on meerkat close call acoustic structure

    Driscoll, I., Briefer, Elodie & Manser, M. B., 2024, In: Animal Behaviour. 212, p. 113-126 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Structure of a metacommunity of urban bees: Species diversity and spatio-temporal modularity

    Dupont, Y. L., Greve, M. B., Madsen, Henning Bang, Rasmussen, C., Timóteo, S. & Olesen, J. M., 2024, In: Basic and Applied Ecology. 77, p. 45-56 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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