Department of Biology

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

Zhong, H., Ren, H., Lu, Y., Fang, C., Hou, G., Yang, Z., Chen, B., Yang, F., Zhao, Y., Shi, Z., Zhou, B., Wu, J., Zou, H., Zi, J., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J., Xu, X. & 10 others, Hou, Y., Yang, H., Wang, J., Liu, S., Jia, H., Madsen, L., Brix, S., Kristiansen, Karsten, Liu, F. & Li, J., 2019, In: EBioMedicine. 47, p. 373-383 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients

Zhong, H., Wang, Y., Shi, Z., Zhang, L., Ren, H., He, W., Zhang, Z., Zhu, A., Zhao, J., Xiao, F., Yang, F., Liang, T., Ye, F., Zhong, B., Ruan, S., Gan, M., Zhu, J., Li, F., Li, F., Wang, D. & 13 others, Li, J., Ren, P., Zhu, S., Yang, H., Wang, J., Kristiansen, Karsten, Tun, H. M., Chen, W., Zhong, N., Xu, X., Li, Y., Li, J. & Zhao, J., 2021, In: Cell Discovery. 7, 14 p., 23.

Research output: Contribution to journal › Journal article › Research › peer-review

Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

Zhong, H., Penders, J., Shi, Z., Ren, H., Cai, K., Fang, Chao, Ding, Q., Thijs, C., Blaak, E. E., Stehouwer, C. D. A., Xu, X., Yang, H., Wang, J., Wang, J., Jonkers, D. M. A. E., Masclee, A. A. M., Brix, S., Li, J., Arts, I. C. W. & Kristiansen, Karsten, 2019, In: Microbiome. 7, p. 1-14 2.

Research output: Contribution to journal › Journal article › Research › peer-review

Lipidomic profiling reveals distinct differences in plasma lipid composition in healthy, prediabetic, and type 2 diabetic individuals

Zhong, H., Fang, C., Fan, Y., Lu, Y., Wen, B., Ren, H., Hou, G., Yang, F., Xie, H., Jie, Z., Peng, Y., Ye, Z., Wu, J., Zi, J., Zhao, G., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J. & 7 others, Yang, H., Wang, J., Madsen, L., Kristiansen, Karsten, Ni, C., Li, J. & Liu, S., Jul 2017, In: GigaScience. 6, 7, p. 1-12 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease

Zhou, F., Cao, H., Zuo, X., Zhang, T., Zhang, X., Liu, X., Xu, R., Chen, G., Zhang, Y., Zheng, X., Jin, X., Gao, J., Mei, J., Sheng, Y., Li, Q., Liang, B., Shen, J., Shen, C., Jiang, H., Zhu, C. & 53 others, Fan, X., Xu, F., Yue, M., Yin, X., Ye, C., Zhang, C., Liu, X., Yu, L., Wu, J., Chen, M., Zhuang, X., Tang, L., Shao, H., Wu, L., Li, J., Xu, Y., Zhang, Y., Zhao, S., Wang, Y., Li, G., Xu, H., Zeng, L., Wang, J., Bai, M., Chen, Y., Chen, W., Kang, T., Wu, Y., Xu, X., Zhu, Z., Cui, Y., Wang, Z., Yang, C., Wang, P., Xiang, L., Chen, X., Zhang, A., Gao, X., Zhang, F., Xu, J., Zheng, M., Zheng, J., Zhang, J., Yu, X., Li, Y., Yang, S., Yang, H., Wang, J., Liu, J., Hammarstrom, L., Sun, L., Wang, J. & Zhang, X., 2016, In: Nature Genetics. 48, 7, 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Performance characterization of PCR-free whole genome sequencing for clinical diagnosis

Zhou, G., Zhou, M., Zeng, F., Zhang, N., Sun, Y., Qiao, Z., Guo, X., Zhou, S., Yun, G., Xie, J., Wang, X., Liu, F., Fan, C., Wang, Y., Fang, Z., Tian, Z., Dai, W., Sun, J., Peng, Z. & Song, L., 2022, In: Medicine. 101, 10, 8 p., e28972.

Research output: Contribution to journal › Journal article › Research › peer-review

Metabolic Inactivity and Re-awakening of a Nitrate Reduction Dependent Iron(II)-Oxidizing Bacterium Bacillus ferrooxidans

Zhou, G., Yang, X. R., Rønn, Regin, Su, J., Cui, L., Zheng, B. & Zhu, Y., 2019, In: Frontiers in Microbiology. 10, 10 p., 1494.

Research output: Contribution to journal › Journal article › Research › peer-review

Neoadjuvant chemotherapy alters peripheral and tumour-infiltrating immune cells in breast cancer revealed by single-cell RNA sequencing

Zhou, H., Li, G., Yin, J., Wang, T., Hu, H., Li, T., Zhou, Q., Hu, J., Wang, L., Dong, S., Wei, C., Zhang, C., Lu, Y., Zhou, W., Huang, C., Yang, H., Zhou, D., Wang, L. & Wu, K., 2021, In: Clinical and Translational Medicine. 11, 12, 6 p., e621.

Research output: Contribution to journal › Comment/debate › Research › peer-review

A comprehensive evaluation of hydrological processes in a second-generation dynamic vegetation model

Zhou, H., Tang, Jing, Olin, S. & Miller, P. A., 2024, In: Hydrological Processes. 38, 4, 17 p., e15152.

Research output: Contribution to journal › Journal article › Research › peer-review

Physical and bacterial controls on inorganic nutrients and dissolved organic carbon during a sea ice growth and decay experiment

Zhou, J., Delille, B., Kaartokallio, H., Kattner, G., Kuosa, H., Tison, J. -., Autio, R., Dieckmann, G. S., Evers, K., Jørgensen, L., Kennedy, H., Kotovitch, M., Luhtanen, A. -., Stedmon, C. A. & Thomas, D. N., 2014, In: Marine Chemistry. 166, p. 59-69 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing

Zhou, J., Yang, Z., Sun, J., Liu, L., Zhou, X., Liu, F., Xing, Y., Cui, S., Xiong, S., Liu, X., Yang, Y., Wei, X., Zou, G., Wang, Z., Wei, X., Wang, Y., Zhang, Y., Yan, S., Wu, F., Zeng, F. & 4 others, Wang, J., Duan, T., Peng, Z. & Sun, L., 2021, In: Genes. 12, 3, 14 p., 376.

Research output: Contribution to journal › Journal article › Research › peer-review

Myosin heavy chain isoforms of human muscle after short-term spaceflight.

Zhou, M., Klitgaard, H., Saltin, B., Roy, R. R., Edgerton, V. R. & Gollnick, P. D., 1995, In: Journal of Applied Physiology. 78(5), p. 1740-1744

Research output: Contribution to journal › Journal article › Research

Complex evolutionary trajectories of sex chromosomes across bird taxa

Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.

Research output: Contribution to journal › Journal article › Research › peer-review

Single-cell RNA-seq reveals distinct dynamic behavior of sex chromosomes during early human embryogenesis

Zhou, Q., Wang, T., Leng, L., Zheng, W., Huang, J., Fang, F., Yang, L., Chen, F., Lin, G., Wang, W. & Kristiansen, Karsten, 2019, In: Molecular Reproduction and Development. 86, 7, p. 871-882

Research output: Contribution to journal › Journal article › Research › peer-review

Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair.

Zhou, Q., Kojic, M., Cao, Z., Lisby, Michael, Mazloum, N. A. & Holloman, W. K., 2007, In: Molecular and Cellular Biology. 27, 7, p. 2512-26 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations

Zhou, X., Sun, F., Xu, S., Fan, G., Zhu, K., Liu, X., Chen, Y., Shi, C., Yang, Y., Huang, Z., Chen, J., Hou, H., Guo, X., Chen, W., Chen, Y., Wang, X., Lv, T., Yang, D., Zhou, J., Huang, B. & 17 others, Wang, Z., Zhao, W., Tian, R., Xiong, Z., Xu, J., Liang, X., Chen, B., Liu, W., Wang, J., Pan, S., Fang, X., Li, M., Wei, F., Xu, X., Zhou, K., Wang, J. & Yang, G., 2013, In: Nature Communications. 4, 6 p., 2708.

Research output: Contribution to journal › Journal article › Research › peer-review

Platypus and echidna genomes reveal mammalian biology and evolution

Zhou, Y., Shearwin-Whyatt, L., Li, J., Song, Z., Hayakawa, T., Stevens, D., Fenelon, J. C., Peel, E., Cheng, Y., Pajpach, F., Bradley, N., Suzuki, H., Nikaido, M., Damas, J., Daish, T., Perry, T., Zhu, Z., Geng, Y., Rhie, A., Sims, Y. & 22 others, Wood, J., Haase, B., Mountcastle, J., Fedrigo, O., Li, Q., Yang, H., Wang, J., Johnston, S. D., Phillippy, A. M., Howe, K., Jarvis, E. D., Ryder, O. A., Kaessmann, H., Donnelly, P., Korlach, J., Lewin, H. A., Graves, J., Belov, K., Renfree, M. B., Grutzner, F., Zhou, Q. & KU, thw266, 2021, In: Nature. 592, 7856, p. 756-762

Research output: Contribution to journal › Journal article › Research › peer-review

Eighty million years of rapid evolution of the primate Y chromosome

Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, Wu, D. D., Schierup, M. H. & KU, thw266, 2023, In: Nature Ecology and Evolution. 7, 20 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community

Zhou, Y., Pope, P. B., Li, S., Wen, B., Tan, F., Cheng, S., Chen, J., Yang, J., Liu, F., Lei, X., Su, Q., Zhou, C., Zhao, J., Dong, X., Jin, T., Zhou, X., Yang, S., Zhang, G., Yang, H., Wang, J. & 3 others, Yang, R., Eijsink, V. G. H. & Wang, J., 2014, In: Scientific Reports. 4, 6 p., 5288.

Research output: Contribution to journal › Journal article › Research › peer-review

Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds

Zhu, C., Miller, M., Lusskin, N., Bergk Pinto, B., Maccario, Lorrie, Häggblom, M., Vogel, T., Larose, C. & Bromberg, Y., 2020, In: MicrobiologyOpen. 9, 9, e1100.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival

Zhu, C., Sun, B., Liu, T., Zheng, H., Gu, W., He, W., Sun, F., Wang, Y., Yang, M., Bei, W., Peng, Xu, She, Q., Xie, L. & Chen, L., 5 Jun 2017, In: BMC Genomics. 18, 19 p., 436.

Research output: Contribution to journal › Journal article › Research › peer-review

Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice

Zhu, F., Guo, R., Wang, W., Ju, Y., Wang, Q., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Liu, B., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Molecular Psychiatry. 25, 11, p. 2905-2918 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Metagenome-wide association of gut microbiome features for schizophrenia

Zhu, F., Ju, Y., Wang, W., Wang, Q., Guo, R., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Feng, J., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Nature Communications. 11, 10 p., 1612.

Research output: Contribution to journal › Journal article › Research › peer-review

An Expanded Gene Catalog of Mouse Gut Metagenomes

Zhu, J., Ren, H., Zhong, H., Li, Xiaoping, Zou, Y., Han, Mo, Li, M., Madsen, L., Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.

Research output: Contribution to journal › Journal article › Research › peer-review

Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa

Zhu, J., Tian, L., Chen, P., Han, M., Song, L., Tong, X., Sun, X., Yang, F., Lin, Z., Liu, X., Liu, C., Wang, X., Lin, Y., Cai, K., Hou, Y., Xu, X., Yang, H., Wang, J., Kristiansen, K., Xiao, L. & 3 others, Zhang, T., Jia, H. & Jie, Zhuye, 2022, In: Genomics, Proteomics and Bioinformatics. 20, 2, p. 246-259

Research output: Contribution to journal › Journal article › Research › peer-review

A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.

Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683

Research output: Contribution to journal › Journal article › Research › peer-review

Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation

Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions

Zhu, X., Wirén, M., Sinha, I., Rasmussen, N. N., Linder, T., Holmberg, Steen, Ekwall, K. & Gustafsson, C. M., 2006, In: Molecular Cell. 22, 2, p. 169-78 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period

Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.

Research output: Contribution to journal › Journal article › Research › peer-review

Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows

Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862

Research output: Contribution to journal › Journal article › Research › peer-review

Comparative Proteomics and Secretomics Revealed Virulence and Antibiotic Resistance-Associated Factors in Vibrio parahaemolyticus Recovered From Commonly Consumed Aquatic Products

Zhu, Z., Yang, L., Yu, P., Wang, Y., Peng, Xu & Chen, L., 2020, In: Frontiers in Microbiology. 11, 31 p., 1453.

Research output: Contribution to journal › Journal article › Research › peer-review

Case report of a Li-Fraumeni syndrome-like phenotype with a de novo mutation in CHEK2

Zhuang, X., Li, Y., Cao, H., Wang, T., Chen, J., Liu, J., Lin, L., Ye, R., Li, X., Liu, S., Li, W., Lv, Y., Zhang, J., He, C., Xu, X., Wang, Z., Huang, C., Liu, X. & Wang, L., 2016, In: Medicine (Baltimore). 95, 29, 6 p., 29.

Research output: Contribution to journal › Journal article › Research › peer-review

Unparalleled details of soft tissues in a Cretaceous ant

Zhuang, Y., Xu, W., KU, thw266, Mai, H., Li, X., He, H., Ran, H. & Liu, Y., 2022, In: BMC Ecology and Evolution. 22, 1, 10 p., 146.

Research output: Contribution to journal › Journal article › Research › peer-review

Diversity and transmission of gut bacteria in Atta and Acromyrmex leaf-cutting ants during development

Zhukova, M., Sapountzis, P., Schiøtt, M. & Boomsma, Jacobus J., 10 Oct 2017, In: Frontiers in Microbiology. 8, 14 p., 1942.

Research output: Contribution to journal › Journal article › Research › peer-review

Phylogenomic analysis and metabolic role reconstruction of mutualistic Rhizobiales hindgut symbionts of Acromyrmex leaf-cutting ants

Zhukova, M., Sapountzis, P., Schiott, M. & Boomsma, Jacobus J., 2022, In: FEMS Microbiology Ecology. 98, 9, 13 p., fiac084.

Research output: Contribution to journal › Journal article › Research › peer-review

Caloplaca tornoënsis and Caloplaca spitsbergensis (lichenes). The two lichen species from the Taimyr Peninsula new to Russia

Zhurbenko, M. P. & Søchting, Ulrik, 1993, In: Botanisk Journal. 78 (2), p. 118-120

Research output: Contribution to journal › Journal article › Research › peer-review

MicroRNAs and potential target interactions in psoriasis

Zibert, J. R., Løvendorf, M. B., Litman, Thomas, Olsen, Jørgen, Kaczkowski, B. & Skov, Lone, 2010, In: Journal of Dermatological Science. 58, 3, p. 177-185 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Hyperspectral Luminescence Imaging in Combination with Signal Deconvolution Enables Reliable Multi-Indicator-Based Chemical Sensing

Zieger, S. E., Moßhammer, Maria, Kühl, Michael & Koren, K., 2021, In: ACS Sensors. 6, 1, p. 183-191

Research output: Contribution to journal › Journal article › Research › peer-review

Dichondra Repens (Convolvulaceae), a new alien species in the flora of Turkey

Zielinski, J. & Tan, K., 2000, In: The Karaca Arboretum Magazine. 5, p. 119-124

Research output: Contribution to journal › Journal article › Research

Notes on the taxonomy of Genista januensis and G. lydia (Fabaceae)

Zielinski, J., Tan, K. & Tomaszewski, D., 2004, In: Annales Botanici Fennici. 41(6), p. 453-457

Research output: Contribution to journal › Journal article › Research

Taxonomic status of the roses (Rosa) described by S.G. Dimitrov from Bulgaria

Zielinski, J., Petrova, A. & Tan, K., 2004, In: Annales Botanici Fennici. 41, 6, p. 449-451

Research output: Contribution to journal › Journal article › Research › peer-review

Clematis austroanatolica (Ranunculaceae), an unusual new species from southern Anatolia, Turkey

Zielinski, J. & Tan, K., 2011, In: Phytotaxa. 24, p. 28-32 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Leapfrogging into new territory: how Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche

Zimkus, B. M., Lawson, L. P., Barej, M. F., Barratt, C. D., Channing, A., Dash, K. M., Dehling, J. M., Du Preez, L., Gehring, P., Greenbaum, E., Gvoždík, V., Harvey, J., Kielgast, J., Kusamba, C., Nagy, Z. T., Pabijan, M., Penner, J., Rödel, M., Vences, M. & Lötters, S., Jan 2017, In: Molecular Phylogenetics and Evolution. 106, p. 254-269 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Circulating leptin and thyroid dysfunction.

Zimmermann-Belsing, T., Brabant, G., Holst, Jens Juul & Feldt-Rasmussen, Ulla, 2003, In: European Journal of Endocrinology. 149, 4, p. 257-71 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

New floristic records in the Balkans 22: reports 160-168

Zografidis, A., Tan, K. & Vold, G., 2013, In: Phytologia Balcanica. 19, 2, p. 298-303 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Effect of caloric restriction on BMI, gut microbiota, and blood amino acid levels in non-obese adults

Zou, H., Wang, D., Ren, H., Cai, K., Chen, P., Fang, Chao, Shi, Z., Zhang, P., Wang, J., Yang, H. & Zhong, H., 2020, In: Nutrients. 12, 3, 15 p., 631.

Research output: Contribution to journal › Journal article › Research › peer-review

Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases

Zou, M., Jie, Z., Cui, B., Wang, H., Feng, Q., Zou, Y., Zhang, X., Yang, H., Wang, J., Zhang, F. & Jia, H., 2020, In: FEBS Open Bio. 10, 1, p. 41-55

Research output: Contribution to journal › Journal article › Research › peer-review

Free Energy Profile and Kinetics of Coupled Folding and Binding of the Intrinsically Disordered Protein p53 with MDM2

Zou, R., Zhou, Y., Wang, Y., Kuang, G., Ågren, H., Wu, J. & Tu, Y., 2020, In: Journal of Chemical Information and Modeling. 60, 3, p. 1551-1558 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov

Zou, Y., Xue, W., Lin, X., Lv, M., Luo, G., Dai, Y., Sun, H., Liu, S., Sun, C., Hu, T. & Xiao, L., 2021, In: Systematic and Applied Microbiology. 44, 3, 8 p., 126201.

Research output: Contribution to journal › Journal article › Research › peer-review

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

Zou, Y., Xue, W., Luo, G., Deng, Z., Qin, P., Guo, R., Sun, H., Xia, Y., Liang, S., Dai, Y., Wan, D., Jiang, R., Su, L., Feng, Q., Jie, Z., Guo, T., Xia, Z., Liu, C., Yu, J., Lin, Y. & 11 others, Tang, S., Huo, G., Xu, X., Hou, Y., Liu, X., Wang, J., Yang, H., Kristiansen, Karsten, Li, J., Jia, H. & Xiao, L., 2019, In: Nature Biotechnology. 37, 2, p. 179-185

Research output: Contribution to journal › Journal article › Research › peer-review

Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut

Zou, Y., Xue, W., Lin, X., Hu, T., Liu, S., Sun, C., Luo, G., Lv, M., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Frontiers in Microbiology. 12, 13 p., 632361.

Research output: Contribution to journal › Journal article › Research › peer-review

Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces

Zou, Y., Lin, X., Xue, W., Tuo, L., Chen, M., Chen, X., Sun, C., Li, F., Liu, S., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Scientific Reports. 11, 13 p., 11340.

Research output: Contribution to journal › Journal article › Research › peer-review

Characteristics of Growth and Development of Different Jerusalem Artichoke Cultivars

Zubr, J. & Pedersen, H. S., 1993, In: Studies in Plant Science. 3, p. 9

Research output: Contribution to journal › Journal article › Research

The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes

Zuo, Zhangli Thomsen, Roux, M. E., Sæmundsson, H. P., Müller, M., Bosch, S. M. & Petersen, Morten, 2021, In: FEBS Letters. 595, 2, p. 253-263 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

PAT mRNA decapping factors are required for proper development in Arabidopsis

Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, M., 2024, (E-pub ahead of print) In: FEBS Letters.

Research output: Contribution to journal › Journal article › Research › peer-review

mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection

Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers

Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, Mette, Sørensen, Søren Johannes & Gunde-Cimerman, N., 2018, In: Frontiers in Microbiology. 9, 13 p., 21.

Research output: Contribution to journal › Journal article › Research › peer-review

A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

Zutz, A., Hamborg, L., Pedersen, L. E., Kassem, M. M., Papaleo, E., Koza, A., Herrgård, M. J., Ingemann Jensen, S., Teilum, Kaare, Lindorff-Larsen, Kresten & Nielsen, A. T., 2021, In: Nature Communications. 12, 15 p., 6093.

Research output: Contribution to journal › Journal article › Research › peer-review

Symbiotic Plant Biomass Decomposition in Fungus-Growing Termites

da Costa, R. R., Hu, H., Li, H. & Poulsen, Michael, 2019, In: Insects. 10, 4, 15 p., 87.

Research output: Contribution to journal › Review › Research › peer-review

Can interaction specificity in the fungus-farming termite symbiosis be explained by nutritional requirements of the fungal crop?

da Costa, R. R., Vreeburg, S. M. E., Shik, Jonathan Z., Aanen, D. K. & Poulsen, Michael, 2019, In: Fungal Ecology. 38, p. 54-61

Research output: Contribution to journal › Journal article › Research › peer-review

A draft genome sequence of the elusive giant squid, Architeuthis dux

da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

Research output: Contribution to journal › Journal article › Research › peer-review

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

Rodrigues da Fonseca, Rute Andreia, Urena, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L. & Ginja, C., 2019, In: BMC Genomics. 20, p. 1-13 334.

Research output: Contribution to journal › Journal article › Research › peer-review

Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

Research output: Contribution to journal › Journal article › Research › peer-review

DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

pCramoll and rCramoll as new preventive agents against the oxidative dysfunction induced by hydrogen peroxide

da Silva, L. C. N., Pereira Alves, N. M., Accioly Brelaz de Castro, M. C., Maciel Higino, T. M., Albuquerque da Cunha, C. R., Alves Pereira, V. R., Nogueira da Paz, N. V., Breitenbach Barroso Coelho, L. C., dos Santos Correia, M. T. & Bressan Queiroz de Figueiredo, R. C., 2015, In: Oxidative Medicine and Cellular Longevity. 2015, 9 p., 520872.

Research output: Contribution to journal › Journal article › Research › peer-review

Glucagon-like peptide-1, but not glucose-dependent insulinotropic peptide, inhibits glucagon secretion via somatostatin (receptor subtype 2) in the perfused rat pancreas

de, H. J., Rasmussen, C., Coy, D. H. & Holst, Jens Juul, 2008, In: Diabetologia. 51, 12, p. 2263-2270 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A microsensor study of light enhanced Ca²⁺ uptake and photosynthesis in the reef-building hermatypic coral Favia sp.

de Beer, D., Kühl, Michael, Stambler, N. & Vaki, L., 2000, In: Marine Ecology Progress Series. 194, p. 75-85 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Reversal of resistance by GF120918 in cell lines expressing the ABC half-transporter, MXR

de Bruin, M., Miyake, K., Litman, Thomas, Robey, R. & Bates, S. E., 15 Nov 1999, In: Cancer Letters. 146, 2, p. 117-26 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Myrer benytter bioreaktorer

de Fine Licht, Henrik Hjarvard, 2010, In: Aktuel Naturvidenskab. 4, p. 10-14

Research output: Contribution to journal › Journal article › Communication

Variable interaction specificity and symbiont performance in Panamanian Trachymyrmex and Sericomyrmex fungus-growing ants

de Fine Licht, Henrik Hjarvard & Boomsma, Jacobus J., 2014, In: B M C Evolutionary Biology. 14, 22 p., 244.

Research output: Contribution to journal › Journal article › Research › peer-review

Asymmetric interaction specificity between two sympatric termites and their fungal symbionts: -

de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Aanen, D. K., 2007, In: Ecological Entomology. 32, 1, p. 76-81 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Symbiotic adaptation in the fungal cultivar of leaf-cutting ants

de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Tunlid, A., 2014, In: Nature Communications. 5, 10 p., 5675.

Research output: Contribution to journal › Journal article › Research › peer-review

Presumptive horizontal symbiont transmission in the fungus-growing termite Macrotermes natalensis

de Fine Licht, Henrik Hjarvard, Boomsma, Jacobus J. & Aanen, D. K., 2006, In: Molecular Ecology. 15, 11, p. 3131-3138

Research output: Contribution to journal › Journal article › Research › peer-review

Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.

Research output: Contribution to journal › Journal article › Research › peer-review

Sulfonylurea compounds uncouple the glucose dependence of the insulinotropic effect of glucagon-like peptide 1.

de Heer, J. & Holst, Jens Juul, 2007, In: Diabetes. 56, 2, p. 438-43 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

No junctional communication between epithelial cells in hydra

de Laat, S. W., Tertoolen, L. G. & Grimmelikhuijzen, Cornelis (Cok), 25 Dec 1980, In: Nature. 288, 5792, p. 711-3 3 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Acclimation of subsurface microbial communities to mercury

de Lipthay, J. R., Rasmussen, L. D., Øregaard, G., Simonsen, K., Bahl, M. I., Kroer, Niels & Sørensen, Søren Johannes, 2008, In: FEMS Microbiology Ecology. 65, 1, p. 145-55 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

In Situ Exposure to Low Herbicide Concentrations Affects Microbial Population Composition and Catabolic Gene Frequency in an Aerobic Shallow Aquifer

de Lipthay, J. R., Tuxen, N., Johnsen, K., Hansen, Lars Hestbjerg, Albrechtsen, H., Bjerg, P. L. & Aamand, J., 2003, In: Applied and Environmental Microbiology. 69, 1, p. 461-467 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Shedding light on Toll signaling through live imaging

de Lotto, R., 2011, In: Fly. 5, 2, p. 141-146 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The evolutionary history of extinct and living lions

de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Chimpanzee genomic diversity reveals ancient admixture with bonobos

de Manuel, M., Kuhlwilm, M., Frandsen, P., Sousa, V. C., Desai, T., Prado-Martinez, J., Hernandez-Rodriguez, J., Dupanloup, I., Lao, O., Hallast, P., Schmidt, J. M., Heredia-Genestar, J. M., Benazzo, A., Barbujani, G., Peter, B. M., Kuderna, L. F. K., Casals, F., Angedakin, S., Arandjelovic, M., Boesch, C. & 17 others, Kühl, H., Vigilant, L., Langergraber, K., Novembre, J., Gut, M., Gut, I., Navarro, A., Carlsen, F., Andrés, A. M., Siegismund, Hans Redlef, Scally, A., Excoffier, L., Tyler-Smith, C., Castellano, S., Xue, Y., Hvilsom, C. & Marques-Bonet, T., 2016, In: Science. 354, 6311, p. 477-481 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The rad52-Y66A allele alters the choice of donor template during spontaneous chromosomal recombination

de Mayolo, A. A., Sunjevaric, I., Reid, R., Mortensen, U. H., Rothstein, R. & Lisby, Michael, 2010, In: DNA Repair. 9, 1, p. 23-32

Research output: Contribution to journal › Journal article › Research › peer-review

Primary sex ratio adjustment by ant queens in response to local mate competition

de Menten, L., Cremer, S., Heinze, J. & Aron, S., 2005, In: Animal Behaviour. 69, 5, p. 1031-1035

Research output: Contribution to journal › Journal article › Research › peer-review

Modern pollen rain in Canary Island ecosystems and its implications for the interpretation of fossil records

de Nascimento, L., Nogué, S., Fernández-Lugo, S., Méndez, J., Otto, R., Whittaker, R. J., Willis, K. J. & Fernández-Palacios, J. M., 2015, In: Review of Palaeobotany and Palynology. 214, p. 27-39 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

An integrated expression atlas of miRNAs and their promoters in human and mouse

de Rie, D., Abugessaisa, I., Alam, T., Arner, E., Arner, P., Ashoor, H., Åström, G., Babina, M., Bertin, N., Burroughs, A. M., Carlisle, A. J., Daub, C. O., Detmar, M., Deviatiiarov, R., Fort, A., Gebhard, C., Goldowitz, D., Guhl, S., Ha, T. J., Harshbarger, J. & 31 others, Hasegawa, A., Hashimoto, K., Herlyn, M., Heutink, P., Hitchens, K. J., Hon, C. C., Huang, E., Ishizu, Y., Kai, C., Kasukawa, T., Klinken, P., Lassmann, T., Lecellier, C., Lee, W., Lizio, M., Makeev, V., Mathelier, A., Medvedeva, Y. A., Mejhert, N., Mungall, C. J., Noma, S., Ohshima, M., Okada-Hatakeyama, M., Persson, H., Rizzu, P., Roudnicky, F., Sætrom, P., Sato, H., Vitting-Seerup, K., Sandelin, Albin Gustav & FANTOM Consortium, F. C., 21 Aug 2017, In: Nature Biotechnology. 35, 9, p. 872-878 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Legacy effects of drought on plant growth and the soil food web

de Vries, F., Liiri, M., Strandmark, L. B., Setälä, H., Christensen, Søren & Bardgett, R., 2012, In: Oecologia. 170, 3, p. 821-833 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Land use alters the resistance and resilience of soil food webs to drought

de Vries, F. T., Liiri, M. E., Strandmark, L. B., Bowker, M. A., Christensen, Søren, Setälä, H. M. & Bardgett, R. D., 2012, In: Nature Climate Change. 2, p. 276-280 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains

de la Cruz Perera, C. I., Ren, D., Blanchet, M., Dendooven, L., Marsch, R., Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 338, 1, p. 95-100 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Molecular characterization and population structure of Apis mellifera from Madeira and the Azores

de la Rúa, P., Galián, J., Pedersen, B. V. & Serrano, J., 2006, In: Apidologie. Vol. 37, no. 6, p. 699-708

Research output: Contribution to journal › Journal article › Research › peer-review

Organic amendments increase phylogenetic diversity of arbuscular mycorrhizal fungi in acid soil contaminated by trace elements

del Mar Montiel-Rozas, M., Lopez Garcia, A., Kjøller, Rasmus, Madejon, E. & Rosendahl, Søren, 2016, In: Mycorrhiza. 26, 6, p. 575-585 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Native soil organic matter as a decisive factor to determine the arbuscular mycorrhizal fungal community structure in contaminated soils

del Mar Montiel-Rozas, M., Lopez Garcia, A., Madejón, P. & Madejón, E., Apr 2017, In: Biology and Fertility of Soils. 53, 3, p. 327-338 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A technique to artificially inseminate leafcutter ants

Beckers, Susanne den Boer, Boomsma, Jacobus J. & Baer, B., 2013, In: Insectes Sociaux. 60, p. 111-118 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The ejaculatory biology of leafcutter ants

Beckers, Susanne den Boer, Stürup, M., Boomsma, Jacobus J. & Baer, B., 2015, In: Journal of Insect Physiology. 74, p. 56-62 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Variation of extrachromosomal circular DNA in cancer cell lines

dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ciprofloxacin intercalated in fluorohectorite clay: identical pure drug activity and toxicity with higher adsorption and controlled release rate

dos Santos, E. C., Rozynek, Z., Hansen, E. L., Hartmann-Petersen, Rasmus, Klitgaard, R. N., Løbner-Olesen, Anders, Michels, L., Mikkelsen, A., Plivelic, Nunes Bordallo, Heloisa & Fossum, J. O., 17 May 2017, In: R S C Advances. 7, 43, p. 26537-26545

Research output: Contribution to journal › Journal article › Research › peer-review

Hundred years of environmental change and phytoplankton ecophysiological variability archived in coastal sediments

dos Santos Ribeiro, Sofia Isabel, Berge, T., Lundholm, Nina & Ellegaard, Marianne, 11 Apr 2013, In: PLoS ONE. 8, 4, 8 p., e61184.

Research output: Contribution to journal › Journal article › Research › peer-review

Reconstructing the history of an invasion: the toxic phytoplankton species Gymnodinium catenatum in the Northeast Atlantic

dos Santos Ribeiro, Sofia Isabel, Amorim, A., Andersen, Thorbjørn Joest, Abrantes, F. & Ellegaard, Marianne, 2012, In: Biological Invasions. 14, 5, p. 969-985 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Phytoplankton growth after a century of dormancy illuminates past resilience to catastrophic darkness

dos Santos Ribeiro, Sofia Isabel, Berge, T., Lundholm, Nina, Andersen, Thorbjørn Joest, Abrantes, F. & Ellegaard, Marianne, 2011, In: Nature Communications. 2, 7 p., 311.

Research output: Contribution to journal › Journal article › Research › peer-review

Climate variability in West Greenland during the past 1500 years: evidence from a high-resolution marine palynological record from Disko Bay

dos Santos Ribeiro, Sofia Isabel, Moros, M., Ellegaard, Marianne & Kuijpers, A., 2012, In: Boreas. 41, 1, p. 68-83 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Role of dung beetle feeding mechanisms in limiting the suitability of species as hosts for the nematode Spirocerca lupi

du Toit, C. A., Holter, P., Lutermann, H. & Scholtz, C. H., 2012, In: Medical & Veterinary Entomology. 26, 4, p. 455-457 3 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ecosystem structure and function of afrotropical streams with contrasting land use

fugère, V., Jacobsen, Dean, Finestone, E. H. & Chapman, L. J., 2018, In: Freshwater Biology. 63, 12, p. 1498-1513 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Differential transcriptional activation of select metabolic genes in response to variations in exercise intensity and duration

hildebrandt, A. L., Pilegaard, Henriette & Neufer, P. D., 2003, In: American Journal of Physiology: Endocrinology and Metabolism. 285, p. E1021-E1027

Research output: Contribution to journal › Journal article › Research › peer-review

The apoptosis linked gene ALG-2 is dysregulated in tumors of various origin and contributes to cancer cell viability

la Cour, J., Høj, B. R., Mollerup, J., Simon, R., Sauter, G. & Berchtold, Martin Werner, 2008, In: Molecular Oncology. 1, 4, p. 431-439 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

ALG-2 participates in recovery of cells after plasma membrane damage by electroporation and digitonin treatment

la Cour, J. M., Gojkovic, P. W., Ambjorner, S. E. B., Bagge, J., Jensen, S. M., Panina, S. & Berchtold, Martin Werner, 2018, In: PLOS ONE. 13, 9, p. 1-13 e0204520.

Research output: Contribution to journal › Journal article › Research › peer-review

ALG-2 oscillates in subcellular localization, unitemporally with calcium oscillations.

la Cour, J. M., Mollerup, J. & Berchtold, Martin Werner, 2007, In: Biochemical and Biophysical Research Communications. 353, 4, p. 1063-7 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Up-regulation of ALG-2 in hepatomas and lung cancer tissue.

la Cour, J. M., Mollerup, J., Winding, P., Tarabykina, S., Sehested, M. & Berchtold, Martin Werner, 2003, In: American Journal of Pathology. 163, 1, p. 81-9 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

ALG-2 attenuates COPII budding in vitro and stabilizes the Sec23/Sec31A complex

la Cour, J. M., Schindler, A. J., Berchtold, Martin Werner & Schekman, R., 2013, In: P L o S One. 8, 9, 8 p., e75309.

Research output: Contribution to journal › Journal article › Research › peer-review

Analysis and prediction of leucine-rich nuclear export signals.

la Cour, T., Kiemer, L., Mølgaard, A., Gupta, R., Skriver, Karen & Brunak, S., 2004, In: Protein Engineering Design and Selection (Print Edition). 17, 6, p. 527-36 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Seedling stage strategies as a means of habitat specialization in herbaceous plants

ten Brink, D. & Bruun, Hans Henrik, 2011, In: P L o S One. 6, 7, 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Geochemical landscapes as drivers of wildlife reproductive success: Insights from a high-Arctic ecosystem

van Beest, F. M., Schmidt, N. M., Stewart, L., Hansen, L. H., Michelsen, Anders, Mosbacher, J. B., Gilbert, H., Le Roux, G. & Hansson, S. V., 2023, In: Science of the Total Environment. 903, 12 p., 166567.

Research output: Contribution to journal › Journal article › Research › peer-review

Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs

van Beest, M., Dooijes, D., van De Wetering, M., Kjaerulff, S., Bonvin, A., Nielsen, O., Clevers, H. & Nielsen, Olaf, 1 Sep 2000, In: Journal of Biological Chemistry. 275, 35, p. 27266-73 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Wolbachia in leafcutter ants: a widespread symbiont that may induce male killing or incompatible matings

van Borm, S., Wenseleers, T., Billen, J. & Boomsma, Jacobus J., 2001, In: Journal of Evolutionary Biology. 14, p. 805-814

Research output: Contribution to journal › Journal article › Research › peer-review

Cloning and sequencing of wsp encoding gene fragments reveals a diversity of co-infecting Wolbachia strains in Acromyrmex leafcutter ants

van Borm, S., Wenseleers, T., Billen, J. & Boomsma, Jacobus J., 2003, In: Molecular Phylogenetics and Evolution. 26, 1, p. 102-109

Research output: Contribution to journal › Journal article › Research › peer-review

Critical threshold size for overwintering sandeels (Ammodytes marinus)

van Deurs, M., Hartvig, M. & Steffensen, John Fleng, 1 Dec 2011, In: Marine Biology. 158, 12, p. 2755-2764 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Morphological classification of plant cell deaths

van Doorn, W. G., Beers, E. P., Dangl, J. L., Franklin-Tong, V. E., Gallois, P., Hara-Nishimura, I., Jones, A. M., Kawai-Yamada, M., Lam, E., Mundy, J., Mur, L. A. J., Petersen, Morten, Smertenko, A., Taliansky, M., Van Breusegem, F., Wolpert, T., Woltering, E., Zhivotovsky, B. & Bozhkov, P. V., 2011, In: Cell Death and Differentiation. 18, 8, p. 1241-1246 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Transcription factor expression is the main determinant of variability in gene co-activity

van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

Research output: Contribution to journal › Journal article › Research › peer-review

Augmented effect of early antibiotic treatment in mice with experimental lung infections due to sequentially adapted mucoid strains of Pseudomonas aeruginosa

van Gennip, M., Moser, C., Hultqvist, Louise Dahl, Bjarnsholt, Thomas, Calum, H., Jensen, Peter Østrup, Christophersen, L., Hougen, H. P., Ciofu, Oana, Molin, S., Givskov, Michael & Høiby, Niels, 1 Dec 2009, In: Journal of Antimicrobial Chemotherapy. 64, 6, p. 1241-50 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Electronic monitoring in fisheries: lessons from global experiences and future opportunities

van Helmond, A. T. M., Mortensen, L. O., Plet-Hansen, K. S., Ulrich, C., Needle, C. L., Oesterwind, D., Kindt-Larsen, L., Catchpole, T., Mangi, S., Zimmermann, C., Olesen, H. J., Bailey, N., Bergsson, H., Dalskov, J., Elson, J., Hosken, M., Peterson, L., McElderry, H., Ruiz, J., Pierre, J. P. & 2 others, Dykstra, C. & Poos, J. J., 2020, In: Fish and Fisheries. 21, 1, p. 162-189

Research output: Contribution to journal › Journal article › Research › peer-review

BVOC emissions from English oak (Quercus robur) and European beech (Fagus sylvatica) along a latitudinal gradient

van Meeningen, Y., Schurgers, Guy, Rinnan, Riikka & Holst, T., 2016, In: Biogeosciences. 13, 21, p. 6067-6080 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Isoprenoid emission variation of Norway spruce across a European latitudinal transect

van Meeningen, Y., Wang, M., Karlsson, T., Seifert, A., Schurgers, Guy, Rinnan, Riikka & Holst, T., Dec 2017, In: Atmospheric Environment. 170, p. 45-57 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Two Rumex species from contrasting hydrological niches regulate flooding tolerance through distinct mechanisms

van Veen, H., Mustroph, A., Barding, G. A., Vergeer-van Eijk, M., Welschen-Evertman, R. A. M., Pedersen, Ole, Visser, E. J. W., Larive, C. K., Pierik, R., Bailey-Serres, J., Voesenek, L. A. C. J. & Sasidharan, R., 2013, In: Plant Cell. 25, 11, p. 4691-4707 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Mutational analysis of the vacuolar sorting signal of procarboxypeptidase Y in yeast shows a low requirement for sequence conservation

van Voorst, F., Kielland-Brandt, M. & Winther, Jakob R., 1996, In: Journal of Biological Chemistry. 271, 2, p. 841-6 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Estimation of the covariance structure from SNP allele frequencies

van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.

Research output: Contribution to journal › Journal article › Research › peer-review

Effect of alkaline treatment on bacteriochlorophyll a, quinones, and energy transfer in chlorosomes from Chlorobium tepidum and Chlorobium phaeobacteroides

van Walree, C. A., Sakuragi, Y., Steensgaard, D. B., Bösinger, C. S., Frigaard, Niels-Ulrik, Cox, R. P., Holzwarth, A. R. & Miller, M., 1999, In: Photochemistry and Photobiology. 69, p. 322-328 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A new class of genic nuclear RNA species in Arabidopsis

van Wonterghem, M., Thieffry, A., Boyd, M., Lange, Jette Bornholdt & Brodersen, Peter, 2018, In: FEBS Letters. 592, 4, p. 631-643 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial

van Zanten, G. C., Krych, Lukasz, Röytiö, H., Forssten, S., Lahtinen, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Svensson, B., Jespersen, Lene & Jakobsen, M., 2014, In: F E M S Microbiology Ecology. 90, 1, p. 225-236 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Frost damage measured by electrolyte leakage in subarctic bryophytes increases with climate warming

van Zuijlen, K., Kassel, M., Dorrepaal, E. & Lett, Signe, 2024, In: Journal of Ecology. 112, 2, p. 220-232 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A statistical approach to identify candidate cues for nestmate recognition

van Zweden, J., Pontieri, L. & Pedersen, Jes Søe, 2014, In: Frontiers in Ecology and Evolution. 2, 11 p., 73.

Research output: Contribution to journal › Journal article › Research › peer-review

Disentangling environmental and heritable nestmate recognition cues in a carpenter ant

van Zweden, J. S., Dreier, S. & d'Ettorre, P., 2009, In: Journal of Insect Physiology. 55, 2, p. 159-164

Research output: Contribution to journal › Journal article › Research › peer-review

Queen signaling in social wasps

van Zweden, J. S., Bonckaert, W., Wenseleers, T. & D'Ettorre, P., 2014, In: Evolution. 68, 4, p. 976-986 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Blending of heritable recognition cues among ant nestmates creates distinct colony gestalt odours but prevents within-colony nepotism

van Zweden, J. S., Brask, J. B., Christensen, Jan H., Boomsma, Jacobus J., Linksvayer, T. A. & D'Ettorre, P., 2010, In: Journal of Evolutionary Biology. 23, 7, p. 1498-1508 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The evolution of honest queen pheromones in insect societies

van Zweden, J. S., 2010, In: Communicative & Integrative Biology. 3, 1, p. 1-3

Research output: Contribution to journal › Journal article › Research › peer-review

Do Cuticular Hydrocarbons Provide Sufficient Information for Optimal Sex Allocation in the Ant Formica exsecta?

van Zweden, J. S., Vitikainen, E., D'Ettorre, P. & Sundström, L., 2011, In: Journal of Chemical Ecology. 37, 12, p. 1365-1373 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ant Queen Egg-Marking Signals: Matching Deceptive Laboratory Simplicity with Natural Complexity

van Zweden, J. S., Heinze, J., Boomsma, Jacobus J. & D'Ettorre, P., 2009, In: PLoS ONE. 4, 3, p. e4718 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Four new genera and six new species of lyophylloid agarics (Agaricales, Basidiomycota) from three different continents

van de Peppel, L. J. J., Aime, M. C., Læssøe, Thomas, Pedersen, O. S., Coimbra, V. R. M., Kuyper, T. W., Stubbe, D., Aanen, D. K. & Baroni, T. J., 2022, In: Mycological Progress. 21, 10, 14 p., 85.

Research output: Contribution to journal › Journal article › Research › peer-review

Reduced chromatin accessibility correlates with resistance to Notch activation

van den Ameele, J., Krautz, Robert, Cheetham, S. W., Donovan, A. P. A., Llorà-Batlle, O., Yakob, R. & Brand, A. H., 2022, In: Nature Communications. 13, 1, 10 p., 2210.

Research output: Contribution to journal › Journal article › Research › peer-review

Autoactivation of proteinase A initiates activation of yeast vacuolar zymogens

van den Hazel, H. B., Kielland-Brandt, M. & Winther, Jakob R., 1992, In: European Journal of Biochemistry. 207, 1, p. 277-83 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The propeptide is required for in vivo formation of stable active yeast proteinase A and can function even when not covalently linked to the mature region

van den Hazel, H. B., Kielland-Brandt, M. & Winther, Jakob R., 1993, In: Journal of Biological Chemistry. 268, 24, p. 18002-7 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Random substitution of large parts of the propeptide of yeast proteinase A

van den Hazel, H. B., Kielland-Brandt, M. & Winther, Jakob R., 1995, In: Journal of Biological Chemistry. 270, 15, p. 8602-9 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Photosynthesis and canopy structure of a submerged plant, Potamogeton pectinatus in a Danish lowland stream

van der Bijl, L., Sand-Jensen, Kaj & Hjermind, A., 1989, In: Journal of Ecology. 77, p. 947-962

Research output: Contribution to journal › Journal article › Research › peer-review

Turbulent flow reduces oxygen consumption in the labriform swimming shiner perch, Cymatogaster aggregata

van der Hoop, J. M., Byron, M. L., Ozolina, K., Miller, D. L., Johansen, J. L., Domenici, P. & Steffensen, John Fleng, 2018, In: Journal of Experimental Biology. 221, 11, p. 1-11 jeb168773.

Research output: Contribution to journal › Journal article › Research › peer-review

Million-year-old DNA sheds light on the genomic history of mammoths

van der Valk, T., Pečnerová, P., Díez-del-Molino, D., Bergström, A., Oppenheimer, J., Hartmann, S., Xenikoudakis, G., Thomas, J. A., Dehasque, M., Sağlıcan, E., Fidan, F. R., Barnes, I., Liu, S., Somel, M., Heintzman, P. D., Nikolskiy, P., Shapiro, B., Skoglund, P., Hofreiter, M., Lister, A. M. & 2 others, Götherström, A. & Dalén, L., 2021, In: Nature. 591, 7849, p. 265-269

Research output: Contribution to journal › Journal article › Research › peer-review

Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome

van der Valk, T., Dehasque, M., Chacón-Duque, J. C., Oskolkov, N., Vartanyan, S., Heintzman, P. D., Chrzanová Pecnerová, Patrícia, Díez-del-Molino, D. & Dalén, L., 2022, In: iScience. 25, 8, 11 p., 104826.

Research output: Contribution to journal › Journal article › Research › peer-review

Spine formation as a hatching tool in Euprymna scolopes (Mollusca, Cephalopoda, Sepiolidae)

von Byern, J., Kerbl, A., Nödl, M. T., Bello, G., Staedler, Y., Schönenberger, J. & Cyran, N., 2016, In: Malacologia. 59, 2, p. 231-238 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The CD3 gamma leucine-based receptor-sorting motif is required for efficient ligand-mediated TCR down-regulation

von Essen, Marina Rode, Bonefeld, Charlotte Menne, Nielsen, B. L., Lauritsen, J. P. H., Dietrich, J., Andersen, P. S., Karjalainen, K., Ødum, Niels & Geisler, Carsten, 2002, In: Journal of Immunology. 168, 9, p. 4519-23 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Vitamin D controls T cell antigen receptor signaling and activation of human T cells

von Essen, Marina Rode, Kongsbak-Wismann, Martin, Schjerling, Peter, Ølgaard, Klaus, Ødum, Niels & Geisler, Carsten, 2010, In: Nature Immunology. 11, 4, p. 344-349 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis

von Eyben, F. E., Kristiansen, Karsten, Kapp, D. S., Hu, R., Preda, O. & Nogales, F. F., 2023, In: International Journal of Molecular Sciences. 24, 4, 28 p., 4148.

Research output: Contribution to journal › Review › Research › peer-review

Nitrogen Fixation in a Changing Arctic Ocean: An Overlooked Source of Nitrogen?

Winberg von Friesen, Lisa & Riemann, Lasse, 2020, In: Frontiers in Microbiology. 11, 9 p., 596426.

Research output: Contribution to journal › Journal article › Research › peer-review

Glacial meltwater and seasonality influence community composition of diazotrophs in Arctic coastal and open waters

Winberg von Friesen, Lisa, Paulsen, M. L., Müller, O., Gründger, F. & Riemann, Lasse, 2023, In: F E M S Microbiology Ecology. 99, 8, 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Kinetics of lactate and pyruvate transport in cultured rat myotubes

von Grumbckow, L., Elsner, P., Hellsten, Ylva, Quistorff, B. & Juel, C., 1999, In: BBA General Subjects. 1417, 2, p. 267-275 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Infectivity of Trichinella spp. recovered from decaying mouse and fox muscle tissue

von Köller, J., Kapel, C. M. O., Enemark, H. L. & Hindsbo, O., 2001, In: Parasite. 8, p. 209-212

Research output: Contribution to journal › Journal article › Research

Modern venomics - Current insights, novel methods, and future perspectives in biological and applied animal venom research

von Reumont, B. M., Anderluh, G., Antunes, A., Ayvazyan, N., Beis, D., Caliskan, F., Crnković, A., Damm, M., Dutertre, S., Ellgaard, L., Gajski, G., German, H., Halassy, B., Hempel, B-F., Hucho, T., Igci, N., Ikonomopoulou, M. P., Karbat, I., Klapa, M. I., Koludarov, I. & 15 others, Kool, J., Lüddecke, T., Ben Mansour, R., Vittoria Modica, M., Moran, Y., Nalbantsoy, A., Ibáñez, M. E. P., Panagiotopoulos, A., Reuveny, E., Céspedes, J. S., Sombke, A., Surm, J. M., Undheim, E. A. B., Verdes, A. & Zancolli, G., 2022, In: GigaScience. 11, 27 p., giac048.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

Research output: Contribution to journal › Journal article › Research › peer-review

The polyketide components of waxes and the Cer-cqu gene cluster encoding a novel polyketide synthase, the β-diketone synthase, DKS

von Wettstein, Penny, Sep 2017, In: Plants. 6, 3, 18 p., 28.

Research output: Contribution to journal › Review › Research › peer-review

Ecophysiology with barley eceriferum (cer) mutants: the effects of humidity and wax crystal structure on yield and vegetative parameters

von Wettstein, Penny, 2020, In: Annals of Botany. 126, 2, p. 301-313 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

ALMS1 Regulates TGF-β Signaling and Morphology of Primary Cilia

Álvarez-Satta, M., Lago-Docampo, M., Bea-Mascato, B., Solarat, C., Castro-Sánchez, S., Christensen, Søren Tvorup & Valverde, D., 2021, In: Frontiers in Cell and Developmental Biology. 9, 8 p., 623829.

Research output: Contribution to journal › Journal article › Research › peer-review

Spatial genetic structure of the sea sandwort (Honckenya peploides) on Surtsey: an immigrant's journey

Árnason, S. H., Thórsson, Æ. T., Magnússon, B., Philipp, M., Adsersen, Henning Emil & Anamthawat-Jónsson, K., 2014, In: Biogeosciences. 11, p. 6495-6507 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The effect of PAMAM G6 dendrimers on the structure of lipid vesicles

Åkesson, A. K. L., Bendtsen, K. M., Beherens, M. A., Pedersen, J. S., Alfredsson, V. & Cardenas Gomez, M., 2010, In: Physical Chemistry Chemical Physics. 12, 38, p. 12267-12272

Research output: Contribution to journal › Journal article › Research › peer-review

A CD146 FACS Protocol Enriches for Luminal Keratin 14/19 Double Positive Human Breast Progenitors

Ísberg, Ó. G., Kim, Jiyoung, Fridriksdottir, A. J., Morsing, M., Timmermans-Wielenga, V., Rønnov-Jessen, Lone, Petersen, Ole William & Villadsen, René, 2019, In: Scientific Reports. 9, 11 p., 14843.

Research output: Contribution to journal › Journal article › Research › peer-review

A new subspecies of Silene acaulis (Caryophyllaceae) from East Anatolia, Turkey

Özgökçe, F., Tan, K. & Stevanovic, V., 2005, In: Annales Botanici Fennici. 42, p. 143-149

Research output: Contribution to journal › Journal article › Research › peer-review

Interaction with the 5D3 monoclonal antibody is regulated by intramolecular rearrangements but not by covalent dimer formation of the human ABCG2 multidrug transporter

Özvegy-Laczka, C., Laczkó, R., Hegedűs, C., Litman, Thomas, Várady, G., Goda, K., Hegedűs, T., Dokholyan, N. V., Sorrentino, B. P., Váradi, A. & Sarkadi, B., 2008, In: The Journal of Biological Chemistry. 283, 38, p. 26059-26070 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

High-throughput screening of Erwinia chrysanthemi pectin methylesterase variants using carbohydrate microarrays

Øbro, J., Sørensen, I., Derkx, P., Madsen, C. T., Drews, M., Willer, M., Mikkelsen, J. D. & Willats, W. G. T., 2009, In: Proteomics - Practical Proteomics. 9, 7, p. 1861-1868

Research output: Contribution to journal › Journal article › Research › peer-review

Signal transduction by HLA class II antigens expressed on activated T cells

Ødum, Niels, Martin, P. J., Schieven, G. L., Hansen, J. A. & Ledbetter, J. A., 1991, In: European Journal of Immunology. 21, 1, p. 123-9 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

HLA-DP related suppression of mixed lymphocyte reaction with alloactivated lymphocytes

Ødum, Niels, Hofmann, B., Jakobsen, B. K., Langhoff, E., Morling, Niels, Platz, P., Ryder, L. P. & Svejgaard, A., 1986, In: HLA. 27, 1, p. 32-43 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A "new" supertypic HLA-DP related determinant detected by primed lymphocyte typing (PLT).

Ødum, Niels, Hofmann, B., Hyldig-Nielsen, J. J., Jakobsen, B. K., Morling, N., Platz, P., Ryder, L. P. & Svejgaard, A., 1987, In: HLA. 29, 2, p. 101-9 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review