- 2024
- Published
Fremme af spontan vegetation efter gran
Thomasen, J. M., Kepfer Rojas, Sebastian, Båstrup-Spohr, Lars & Raulund-Rasmussen, Karsten, 22 Apr 2024, 6 p. Institut for Geovidenskab og Naturforvaltning, Københavns Universitet.Research output: Other contribution › Net publication - Internet publication › Communication
- Published
A region of suppressed recombination misleads neoavian phylogenomics
Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 1 Apr 2024, In: Nature.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Næste niveau for dansk life science er verdenstoppen – vi har fagligheden til at være der: Danske forskere, talenter og virksomheder har både bredden og niveauet til at gøre København til det næste Kendall Square. Biologisk Institut står på spring i startklodserne.
Kroer, Niels, 12 Jan 2024, In: MedWatch.Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication
- Published
Drosophila cytokine GBP2 exerts immune responses and regulates GBP1 expression through GPCR receptor Mthl10
Ono, M., Matsumura, T., Sung, E. J., Koyama, Takashi, Ochiai, M., Shears, S. B. & Hayakawa, Y., 2024, In: Insect Biochemistry and Molecular Biology. 167, 7 p., 104086.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In situ incubation of iron(II)-bearing minerals and Fe(0) reveals insights into metabolic flexibility of chemolithotrophic bacteria in a nitrate polluted karst aquifer
Visser, A. N., Martin, Joseph Donald, Osenbrück, K., Rügner, H., Grathwohl, P. & Kappler, A., 2024, In: Science of the Total Environment. 926, 16 p., 172062.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A biogeographical appraisal of the threatened South East Africa Montane Archipelago ecoregion
Bayliss, J., Bittencourt-Silva, G. B., Branch, W. R., Bruessow, C., Collins, S., Congdon, T. C. E., Conradie, W., Curran, M., Daniels, S. R., Darbyshire, I., Farooq, H., Fishpool, L., Grantham, G., Magombo, Z., Matimele, H., Monadjem, A., Monteiro, J., Osborne, J., Saunders, J., Smith, P. & 6 others, , 2024, In: Scientific Reports. 14, 1, 16 p., 5971.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics
Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comprehensive evaluation of hydrological processes in a second-generation dynamic vegetation model
Zhou, H., Tang, Jing, Olin, S. & Miller, P. A., 2024, In: Hydrological Processes. 38, 4, 17 p., e15152.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A druggable conformational switch in the c-MYC transactivation domain
Lama, D., Vosselman, T., Sahin, Cagla, Liaño-pons, J., Cerrato, C. P., Nilsson, L., Teilum, Kaare, Lane, D. P., Landreh, M. & Arsenian Henriksson, M., 2024, In: Nature Communications. 15, 1, 14 p., 1865.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A mutational atlas for Parkin proteostasis
Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A new temperature-photoperiod coupled phenology module in LPJ-GUESS model v4.1: Optimizing estimation of terrestrial carbon and water processes
Chen, S., Fu, Y. H., Li, M., Jia, Z., Cui, Y. & Tang, Jing, 2024, In: Geoscientific Model Development. 17, 7, p. 2509-2523 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A pragmatic approach for integrating molecular tools into biodiversity conservation
Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, , 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
A spatiotemporal atlas of mouse liver homeostasis and regeneration
Xu, J., Guo, P., Hao, S., Shangguan, S., Shi, Q., Volpe, G., Huang, K., Zuo, J., An, J., Yuan, Y., Cheng, M., Deng, Q., Zhang, X., Lai, G., Nan, H., Wu, B., Shentu, X., Wu, L., Wei, X., Jiang, Y. & 38 others, , 2024, (E-pub ahead of print) In: Nature Genetics.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AI Implementation and Capability Development in Manufacturing: An Action Research Case
Eklöf, Jon, Snis, U. L., Hamelryck, Thomas Wim, Grima, A. & Rønning, Ola, 2024, Proceedings of the 57th Hawaii International Conference on System Sciences - HICSS 2024. Hawaii International Conference on System Sciences, 10 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Acclimation of subarctic vegetation to warming and increased cloudiness
Ndah, F. A., Maljanen, M., Kasurinen, A., Rinnan, Riikka, Michelsen, Anders, Kotilainen, T. & Kivimäenpää, M., 2024, In: Plant-Environment Interactions. 5, 1, 16 p., e10130.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Accounting for Winter Warming Events in the Ecosystem Model LPJ-GUESS: Evaluation and Outlook
Pascual, D., Johansson, M., Pongracz, A. & Tang, Jing, 2024, In: Journal of Geophysical Research: Biogeosciences. 129, 3, 13 p., e2023JG007464.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Acid–base transporters in the context of tumor heterogeneity
Pedersen, Stine Helene Falsig, 2024, In: Pflugers Archiv European Journal of Physiology. 476, p. 689–701 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival
Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, , 2024, In: Nature Communications. 15, 1, 15 p., 172.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Exploration of Artificial Intelligence-Driven De Novo Peptide Sequencing: Towards Future Proteomics and Medicine
Chang, Yuqi, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Analysis of Genomic and Transcriptomic Signatures Associated with Amyotrophic Lateral Sclerosis
Guan, Liping, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing
Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Ancient and Modern Genomes Reveal Microsatellites Maintain a Dynamic Equilibrium Through Deep Time
McComish, B. J., Charleston, M. A., Parks, M., Baroni, C., Salvatore, M. C., Li, R., KU, thw266, Millar, C. D., Holland, B. R. & Lambert, D. M., 2024, In: Genome Biology and Evolution. 16, 3, 11 p., evae017.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants
Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Aspects of Neurovascular Signaling Mechanisms in Migraine
Rasmussen, Rikke Holm, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 129 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Assessment of salt-affected soil in selected rice irrigation schemes in Tanzania: understanding salt types for optimizing management approaches
Omar, M. M., Massawe, B. H. J., Shitindi, M. J., Pedersen, Ole, Meliyo, J. L. & Fue, K. G., 2024, In: Frontiers in Soil Science. 4, 14 p., 1372838.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial chromosomes and their replication
Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- E-pub ahead of print
BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum
Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis
Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages
Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cadmium accumulation in organisms from a spruce plantation amended with wood ash - an environmental risk?
Ekelund, Flemming, Cruz-Paredes, C., Jørgensen, Christian Hviid Friis, Vestergård, M., Rasmussen, K. R., Mortensen, Louise Hindborg, Kindtler, Nikolaj Lunding, Rønn, Regin, Christensen, Søren, Johansen, Jesper Liengaard & Kjøller, Rasmus, 2024, In: Trees, Forests and People. 15, 6 p., 100499.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Calls of the little auk (Alle alle) chicks reflect their behavioural contexts
Osiecka, A. N., Briefer, Elodie, Kidawa, D., Żurawska, F. & Wojczulanis-Jakubas, K., 2024, In: PLoS ONE. 19, 2, 14 p., e0299033.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Can large language models reason about medical questions?
Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, Ole, 2024, In: Patterns. 5, 3, 12 p., 100943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination
Hansen, A. L., Theisen, Frederik Friis, Crehuet, R., Marcos, E., Aghajari, N. & Willemoës, Martin, 2024, In: ACS Synthetic Biology. 13, 3, p. 862-875 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cellular and molecular mechanisms of aspartoacylase and its role in Canavan disease
Grønbæk-Thygesen, Martin & Hartmann-Petersen, Rasmus, 2024, In: Cell and Bioscience. 14, 1, 33 p., 45.Research output: Contribution to journal › Review › Research › peer-review
- Published
Changes in composition and function of soil microbial communities during secondary succession in oldfields on the Tibetan Plateau
Ma, Hui, Yan, X., Gao, E., Qiu, Y., Sun, X., Wang, S., Wang, Y., Bruun, Hans Henrik, He, Z., Shi, X. & Zhao, Z., 2024, In: Plant and Soil. 495, p. 429–443 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
Gersing, S., Schulze, Thea Klarsø, Cagiada, Matteo, Stein, Amelie, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Genome Biology. 25, 1, 22 p., 98.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs
Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cholesterol-binding motifs in STING that control endoplasmic reticulum retention mediate anti-tumoral activity of cholesterol-lowering compounds
Zhang, B. C., Laursen, M. F., Hu, L., Hazrati, H., Narita, R., Jensen, L. S., Hansen, A. S., Huang, J., Zhang, Y., Ding, X., Muyesier, M., Nilsson, E., Banasik, A., Zeiler, C., Mogensen, T. H., Etzerodt, A., Agger, R., Johannsen, M., Kofod-Olsen, E., Paludan, S. R. & 1 others, , 2024, In: Nature Communications. 15, 1, 17 p., 2760.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromatin image-driven modelling
Kadlof, M., Banecki, K., Chilinski, Mateusz & Plewczynski, D., 2024, In: Methods. 226, p. 54-60 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Circle-seq based method for eccDNA synthesis and its application as a canonical promoter independent vector for robust microRNA overexpression
Yu, J., Zhang, H., Han, Peng, Jiang, X., Li, J., Li, B., Yang, S., He, C., Mao, S., Dang, Y. & Xiang, X., 2024, In: Computational and Structural Biotechnology Journal. 23, p. 358-368 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata)
Defourneaux, Eloïse Pauline Sarah, Herranz, Maria, Armenteros, M., Sørensen, Martin Vinther, Norenburg, J. L., Park, T. & Worsaae, Katrine, 2024, In: Scientific Reports. 14, 1, 20 p., 9296.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comment on “DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction”
Vinther, Jeppe, 2024, In: Analytical Chemistry. 96, 1, p. 606-609 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly
Hu, T., Chen, J., Lin, X., He, W., Liang, H., Wang, M., Li, W., Wu, Z., Han, Mo, Jin, X., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: Scientific Reports. 14, 1, 9 p., 1292.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conformational ensembles of the human intrinsically disordered proteome
Tesei, Giulio, Trolle, A. I., Jonsson, Nicolas, Betz, J., Knudsen, F. E., Pesce, Francesco, Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2024, In: Nature. 626, p. 897-904 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Controlling biases in targeted plant removal experiments
Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering & Väisänen, M., 2024, In: New Phytologist. 242, 4, p. 1835-1845 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements
Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Cross-feeding während der Ausbreitung auf Oberflächen
Kovács, Á. T. & Kiesewalter, Heiko T., 2024, In: BioSpektrum. 30, 1, p. 71 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Cytotoxicity of Prymnesium parvum extracts and prymnesin analogs on epithelial fish gill cells RTgill‑W1 and the human colon cell line HCEC‑1CT
Varga, E., Prause, H., Riepl, M., Hochmayr, N., Berk, D., Attakpah, E., Kiss, E., Medic, Nikola, Del Favero, G., Larsen, T. O., Hansen, Per Juel & Marko, D., 2024, In: Archives of Toxicology. 98, p. 999–1014 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2
Bjarnason, S., McIvor, J. A. P., Prestel, Andreas, Demény, K. S., Bullerjahn, J. T., Kragelund, Birthe Brandt, Mercadante, D. & Heidarsson, P. O., 2024, In: Nature Communications. 15, 1, 16 p., 1445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity
Lourenço, L., Ellegaard Bager, S., Ng, D. Y. K., Sheikh, Sanea, Kindtler, Nikolaj Lunding, Nielsen, Ida Broman, Frøslev, Tobias Guldberg & Ekelund, Flemming, 2024, In: Protist. 175, 2, 9 p., 126016.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering unique and shared interactions between the human gut microbiota and oral antidiabetic drugs
Ren, H., Shi, Z., Yang, F., Wang, S., Yuan, F., Li, T., Li, M., Zhu, J., Li, J., Wu, K., Zhang, Y., Ning, G., Kristiansen, Karsten, Wang, W., Gu, Y. & Zhong, H., 2024, In: iMeta. 3, 2, 9 p., e179.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning
Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2024, In: Bioinformatics. 40, 2, 10 p., btae065.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations
Høie, M. H., Gade, F. S., Johansen, J., Würtzen, C., Winther, Ole, Nielsen, M. & Marcatili, P., 2024, In: Frontiers in Immunology. 15, 12 p., 1322712.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium Crocosphaera
Filella, A., Umbricht, J., Klett, A., Vogts, A., Vannier, T., Grosso, O., Voss, M., Riemann, Lasse & Benavides, M., 2024, (E-pub ahead of print) In: Limnology and Oceanography Letters.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases
Guo, Zongxin, Orädd, F., Bågenholm, Viktoria, Grønberg, C., Ma, J. F., Ott, P., Wang, Y., Andersson, M., Pedersen, Per Amstrup, Wang, Kaituo & Gourdon, Pontus Emanuel, 2024, In: Nature Communications. 15, 1, 16 p., 2690.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Drosophila activins adapt gut size to food intake and promote regenerative growth
Christensen, Christian Fokdal, Laurichesse, Quentin Charles B, Loudhaief, Rihab, Colombani, Julien & Andersen, Ditte Skovaa, 2024, In: Nature Communications. 15, 1, 12 p., 273.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of inflammation-associated plasma proteins following faecal microbiota transplantation in patients with psoriatic arthritis and healthy controls: exploratory findings from the FLORA trial [Inkl. Correction]
Kragsnaes, M. S., Jensen, J. R. B., Nilsson, A. C., Malik, M. I., Munk, H. L., Pedersen, J. K., Horn, H. C., Kruhøffer, M., Kristiansen, Karsten, Mullish, B. H., Marchesi, J. R., Kjeldsen, J., Röttger, R. & Ellingsen, T., 2024, In: RMD Open. 10, 1, 13 p., e003750.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ETV2 induces endothelial, but not hematopoietic, lineage specification in birds
Weng, W., Deng, Y., Deviatiiarov, R., Hamidi, S., Kajikawa, E., Gusev, O., Kiyonari, H., KU, thw266 & Sheng, G., 2024, In: Life Science Alliance. 7, 6, 12 p., e202402694.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Early life factors and oral microbial signatures define the risk of caries in a Swedish cohort of preschool children
Eriksen, C., Boustedt, K., Sonne, Si Brask, Dahlgren, J., Kristiansen, Karsten, Twetman, Svante, Brix, S. & Roswall, J., 2024, In: Scientific Reports. 14, 1, 13 p., 8463.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Editorial: Microbial fermentation for improved sensory properties and functionality of sustainable foods
Verni, M., Holt, Sylvester & Rizzello, C. G., 2024, In: Frontiers in Microbiology. 15, 2 p., 1387745.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Editorial overview: New and revitalized old targets in metabolic disease
Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Editorial: Optics and ecophysiology of coral reef organisms: volume II
Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya
Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Efficient statistical and computational methods for large scale sequencing data
Li, Zilong, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.Research output: Book/Report › Doctoral thesis › Research
- Published
Endogenous Tagging of Ciliary Genes in Human RPE1 Cells for Live-Cell Imaging
Kuhns, S., Juhl, A. D., Anvarian, Zeinab, Wüstner, D., Pedersen, Lotte Bang & Andersen, J. S., 2024, Methods in Molecular Biology. Humana Press, p. 147-166 20 p. (Methods in Molecular Biology, Vol. 2725).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark
Pust, F. L., Frøslev, Tobias Guldberg, Kristensen, Reinhardt Møbjerg & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 20-33Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer
Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extrachromosomal Circular DNA: An Emerging Potential Biomarker for Inflammatory Bowel Diseases?
Petito, V., Di Vincenzo, F., Putignani, L., Abreu, M. T., Regenberg, Birgitte, Gasbarrini, A. & Scaldaferri, F., 2024, In: Genes. 15, 4, 11 p., 414.Research output: Contribution to journal › Review › Research › peer-review
- E-pub ahead of print
Eyes, Vision, and Bioluminescence in Deep-Sea Brisingid Sea Stars
Garm, Anders Lydik, Hamilton, O., Glenner, Henrik, Irwin, Alison Ruth & Mah, C., 2024, (E-pub ahead of print) In: Biological Bulletin.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries
Montepietra, D., Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Best, R. B. & Lindorff-Larsen, Kresten, 2024, In: Communications Biology . 7, 1, 10 p., 298.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Facing Danger: Exploring Personality and Reactions of European Hedgehogs (Erinaceus europaeus) towards Robotic Lawn Mowers
Rasmussen, S. L., Schrøder, B. T., Berger, A., Macdonald, D. W., Pertoldi, C., Briefer, Elodie & Alstrup, A. K. O., 2024, In: Animals. 14, 1, 19 p., 2.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fertilizer regime and cultivar affect barley growth and rhizobiome composition
Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fine roots and extramatrical mycelia regulate the composition of soil organic carbon and nitrogen in a subtropical montane forest
Zhao, X., Tian, Q., Michelsen, Anders, Chen, L., Yue, P., Feng, Z., Lin, Q., Zhao, R. & Liu, F., 2024, In: Forest Ecology and Management. 554, 8 p., 121661.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study
Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Flooding stress and responses to hypoxia in plants
Jimenez Serna, Juan de la Cruz, Mustroph, A., Pedersen, Ole, Weits, D. A. & Schmidt-schippers, R., 2024, In: Functional Plant Biology. 51, 4, 5 p., FP24061.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Flooding-adaptive root and shoot traits in rice
Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Freshwater Ecosystems, Human Impact on
Sand-Jensen, Kaj, 2024, Encyclopedia of Biodiversity, Third Edition: Volume 1-7. 3 ed. Elsevier, p. 617-635 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Frost damage measured by electrolyte leakage in subarctic bryophytes increases with climate warming
van Zuijlen, K., Kassel, M., Dorrepaal, E. & Lett, Signe, 2024, In: Journal of Ecology. 112, 2, p. 220-232 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Function and induction of the root barrier to radial O2 loss. A commentary on ‘Exogenous abscisic acid induces the formation of a suberized barrier to radial oxygen loss in adventitious roots of barley (Hordeum vulgare)’
Pedersen, Ole & Jimenez Serna, Juan de la Cruz, 2024, In: Annals of Botany.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking
Chio, U. S., Palovcak, E., Smith, A. A. A., Autzen, Henriette Elisabeth, Muñoz, E. N., Yu, Z., Wang, F., Agard, D. A., Armache, J. P., Narlikar, G. J. & Cheng, Y., 2024, In: Nature Communications. 15, 1, 12 p., 2225.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GLP-1 metabolite GLP-1(9–36) is a systemic inhibitor of mouse and human pancreatic islet glucagon secretion
Gandasi, N. R., Gao, R., Kothegala, L., Pearce, A., Santos, C., Acreman, S., Basco, D., Benrick, A., Chibalina, M. V., Clark, A., Guida, C., Harris, M., Johnson, P. R. V., Knudsen, J. G., Ma, J., Miranda, C., Shigeto, M., Tarasov, A. I., Yeung, H. Y., Thorens, B. & 5 others, , 2024, In: Diabetologia. 67, p. 528–546 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GWAS of lipids in Greenlanders finds association signals shared with Europeans and reveals an independent PCSK9 association signal
Senftleber, N. K., Andersen, M. K., Jørsboe, E., Stæger, Frederik Filip Vinggaard, Nøhr, A. K., Garcia Erill, Genís, Meisner, Jonas, Santander, Cindy, Balboa, Renzo Fidel Ferdinando, Gilly, A., Bjerregaard, P., Larsen, C. V. L., Grarup, Niels, Jørgensen, M. E., Zeggini, E., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2024, In: European Journal of Human Genetics. 32, p. 215–223 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions
Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota
Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Giraffe lineages are shaped by major ancient admixture events
Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, , 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global N2O emissions from our planet: Which fluxes are affected by man, and can we reduce these?
Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.Research output: Contribution to journal › Review › Research › peer-review
- Published
Going through changes - the role of autophagy during reprogramming and differentiation
Petersen, Morten, Ebstrup, E. & Rodriguez, Eleazar, 2024, In: Journal of Cell Science. 137, 4, 10 p., jcs261655.Research output: Contribution to journal › Review › Research › peer-review
- Published
Gut microbiota signatures in inflammatory bowel disease
Vestergaard, M. V., Allin, K. H., Eriksen, C., Zakerska-Banaszak, O., Arasaradnam, R. P., Alam, M. T., Kristiansen, Karsten, Brix, S. & Jess, T., 2024, In: United European Gastroenterology Journal. 12, 1, p. 22-33 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass
Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
High N6-methyladenosine-activated TCEAL8 mRNA is a novel pancreatic cancer marker
Hara, T., Meng, S., Sato, H., Tatekawa, S., Sasaki, K., Takeda, Y., Tsuji, Y., Arao, Y., Ofusa, K., Kitagawa, T., Yamada, D., Takahashi, H., Kobayashi, S., Motooka, D., Suzuki, Y., Rennie, S., Uchida, S., Mori, M., Ogawa, K., Doki, Y. & 2 others, , 2024, (E-pub ahead of print) In: Cancer Science.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator
Popovic, I., Bergeron, Lucie Adrienne, Bozec, Y. M., Waldvogel, A. M., Howitt, S. M., Damjanovic, K., Patel, F., Cabrera, M. G., Wörheide, G., Uthicke, S. & Riginos, C., 2024, In: PLOS Genetics. 20, 2, 22 p., e1011129.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-resolution vision in pelagic polychaetes
Bok, M. J., Macali, A. & Garm, Anders Lydik, 2024, In: Current Biology. 34, 7, p. R269-R270 2 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- E-pub ahead of print
Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots
Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater
Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon
Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hourly methane and carbon dioxide fluxes from temperate ponds
Sø, Jonas Stage, Martinsen, K. T., Kragh, T. & Sand-Jensen, Kaj, 2024, In: Biogeochemistry. 167, p. 177-195 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human P2X7 receptor variants Gly150Arg and Arg276His polymorphisms have differential effects on risk association and cellular functions in pancreatic cancer
Magni, Lara, Yu, Haoran, Christensen, Nynne, Poulsen, Mette Homann, Frueh, A., Deshar, Ganga, Johansen, A. Z., Johansen, Julia Sidenius, Pless, Stephan, Jørgensen, Niklas Rye & Novak, Ivana, 2024, In: Cancer Cell International. 24, 1, 16 p., 148.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hymenopteran parasitoids reared from European gall midges (Diptera, Cecidomyiidae)
Bruun, Hans Henrik, Haarder, S., Buhl, P. N. & Askew, R. R., 2024, In: Biodiversity Data Journal. 12, 34 p., e118487.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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