Department of Biology

 

 
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  1. 2024
  2. Published

    The extrachromosomal circular DNA atlas of aged and young mouse brains

    Hong, X., Li, J., Han, Peng, Li, S., Yu, J., Zhang, H., Li, J., Dang, Y. & Xiang, X., 2024, In: Scientific Data. 11, 1, 8 p., 318.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. E-pub ahead of print

    The impact of the migraine treatment onabotulinumtoxinA on inflammatory and pain responses: Insights from an animal model

    Reducha, Philip Victor, Bömers, J. P., Edvinsson, L. & Haanes, Kristian Agmund, 2024, (E-pub ahead of print) In: Headache.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    The molecular basis for cellular function of intrinsically disordered protein regions

    Holehouse, A. S. & Kragelund, Birthe Brandt, 2024, In: Nature Reviews Molecular Cell Biology. 25, p. 187–211 25 p.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    The nightscape of the Arctic winter shapes the diving behavior of a marine predator

    Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The relationships between biotic uniqueness and abiotic uniqueness are context dependent across drainage basins worldwide

    Snåre, H., García-Girón, J., Alahuhta, J., Bini, L. M., Boda, P., Bonada, N., Brasil, L. S., Callisto, M., Castro, D. M. P., Chen, K., Csabai, Z., Datry, T., Domisch, S., García-Marquez, J. R., Floury, M., Friberg, N., Gill, B. A., González-Trujillo, J. D., Göthe, E., Haase, P. & 29 others, Hamada, N., Hill, M. J., Hjort, J., Juen, L., Jupke, J. F., de Faria, A. P. J., Li, Z., Ligeiro, R., Linares, M. S., Luiza-Andrade, A., Macedo, D. R., Mathers, K. L., Mellado-Diaz, A., Milosevic, D., Moya, N., Poff, N. L. R., Rolls, R. J., Roque, F. O., Saito, V. S., Sandin, L., Schäfer, R. B., Scotti, A., Siqueira, T., Martins, R. T., Valente-Neto, F., Wang, B., Wang, J., Xie, Z. & Heino, J., 2024, In: Landscape Ecology. 39, 4, 18 p., 86.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The role of neighbour proximity and context on meerkat close call acoustic structure

    Driscoll, I., Briefer, Elodie & Manser, M. B., 2024, In: Animal Behaviour. 212, p. 113-126 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The rostral micro-tooth morphology of blue marlin, Makaira nigricans

    Pacher, K., Breuker, M., Hansen, M. J., Kurvers, R. H. J. M., Häge, J., Dhellemmes, F., Domenici, P., Steffensen, John Fleng, Krause, S., Hildebrandt, T., Fritsch, G., Bach, P., Sabarros, P. S., Zaslansky, P., Mahlow, K., Müller, J., Armas, R. G., Ortiz, H. V., Galván-Magaña, F. & Krause, J., 2024, In: Journal of Fish Biology. 104, 3, p. 713-722 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The tick Ixodes scapularis has five different GPCRs specifically activated by ACP (adipokinetic hormone/corazonin-related peptide)

    Hauser, Frank, Stebegg, M., Al-Ribaty, T., Petersen, L. B., Møller, M., Drag, Markus Hodal, Sigurdsson, H. H., Vilhelm, M. J., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2024, In: Biochemical and Biophysical Research Communications. 717, 7 p., 149992.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Translational frontiers: insight from lymphatics in skin regeneration

    Jiang, Y. & Perez-Moreno, Mirna, 2024, In: Frontiers in Physiology. 15, 8 p., 1347558.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    Transmembrane transporter proteins: Capturing transport in motion

    Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  14. Published

    Type XXIII collagen

    Crespo Bravo, Marina, Kehlet, S. N., Jessen, H. & Karsdal, M. A., 2024, Biochemistry of Collagens, Laminins and Elastin: Structure, Function and Biomarkers. 3 ed. Elsevier, p. 199-202 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  15. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356, 13 p., 120570.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. 2023
  19. Published

    Cold-stimulated brown adipose tissue activation is related to changes in serum metabolites relevant to NAD+ metabolism in humans

    U-Din, M., de Mello, V. D., Tuomainen, M., Raiko, J., Niemi, T., Fromme, T., Klåvus, A., Gautier, N., Haimilahti, K., Lehtonen, M., Kristiansen, Karsten, Newman, J. W., Pietiläinen, K. H., Pihlajamäki, J., Amri, E. Z., Klingenspor, M., Nuutila, P., Pirinen, E., Hanhineva, K. & Virtanen, K. A., 26 Sep 2023, In: Cell Reports. 42, 9, 23 p., 113131.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species

    Dai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., Wen, J., Yang, Q., Deng, W., Nanaei, H. A., Wang, Y., Wang, F., Zhang, Z., Rosen, B. D., Heller, Rasmus & Jiang, Y., Aug 2023, In: Genome Research. 33, 8, p. 1284-1298 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Fitting Force Field Parameters to NMR Relaxation Data

    Kümmerer, Felix, Orioli, S. & Lindorff-Larsen, Kresten, 5 Jun 2023, In: Journal of Chemical Theory and Computation. 19, 12, p. 3741-3751 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, K. T. & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contribution › Net publication - Internet publication › Communication

  23. Published

    Fra forsøg til forankring: Flersproget faglig skrivning på bacheloruddannelsen i biokemi

    Larsen, Sanne, Laursen, Katja Årosin & Skriver, Karen, 3 May 2023, In: Dansk universitetspædagogisk tidsskrift [online]. p. 25-40 16 p.

    Research output: Contribution to journal › Journal article › Communication

  24. Published

    Modeling of flexible membrane-bound biomolecular complexes for solution small-angle scattering

    Barclay, A., Kragelund, Birthe Brandt, Arleth, Lise & Pedersen, Martin Cramer, Apr 2023, In: Journal of Colloid and Interface Science. 635, p. 611-621 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genetic architecture of spatial electrical biomarkers for cardiac arrhythmia and relationship with cardiovascular disease

    Young, W. J., Haessler, J., Benjamins, J-W., Repetto, L., Yao, J., Isaacs, A., Harper, A. R., Ramirez, J., Garnier, S., van Duijvenboden, S., Baldassari, A. R., Concas, M. P., Duong, T., Foco, L., Isaksen, J. L., Mei, H., Noordam, R., Nursyifa, C., Richmond, A., Santolalla, M. L. & 74 others, Sitlani, C. M., Soroush, N., Thériault, S., Trompet, S., Aeschbacher, S., Ahmadizar, F., Alonso, A., Brody, J. A., Campbell, A., Correa, A., Darbar, D., De Luca, A., Deleuze, J., Ellervik, Christina, Fuchsberger, C., Goel, A., Grace, C., Guo, X., Hansen, Torben, Heckbert, S. R., Jackson, R. D., Kors, J. A., Lima-Costa, M. F., Linneberg, Allan René, Macfarlane, P. W., Morrison, A. C., Navarro, P., Porteous, D. J., Pramstaller, P. P., Reiner, A. P., Risch, L., Schotten, U., Shen, X., Sinagra, G., Soliman, E. Z., Stoll, M., Tarazona-Santos, E., Tinker, A., Trajanoska, K., Villard, E., Warren, H. R., Whitsel, E. A., Wiggins, K. L., Arking, D. E., Avery, C. L., Conen, D., Girotto, G., Grarup, Niels, Hayward, C., Jukema, J. W., Mook-Kanamori, D. O., Olesen, Morten Steen Salling, Padmanabhan, S., Psaty, B. M., Pattaro, C., Ribeiro, A. L. P., Rotter, J. I., Stricker, B. H., van der Harst, P., van Duijn, C. M., Verweij, N., Wilson, J. G., Orini, M., Charron, P., Watkins, H., Kooperberg, C., Lin, H. J., Wilson, J. F., Kanters, Jørgen K., Sotoodehnia, N., Mifsud, B., Lambiase, P. D., Tereshchenko, L. G. & Munroe, P. B., 14 Mar 2023, In: Nature Communications. 14, 1, 16 p., 1411.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    2023 BMC Ecology and Evolution image competition: the winning images

    Harman, J., Hipsley, Christy Anna, Jacobus, L. M., Liberles, D. A., Settele, J. & Traulsen, A., 2023, In: BMC Ecology and Evolution. 23, 1, 7 p., 32.

    Research output: Contribution to journal › Editorial › Research

  27. Published

    Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences

    Grollmann, M. M., Jørgensen, Aslak & Møbjerg, Nadja, 2023, In: Zootaxa. 5284, 2, p. 351-363 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Bacillus thuringiensis toxins divert progenitor cells toward enteroendocrine fate by decreasing cell adhesion with intestinal stem cells in Drosophila

    Jneid, Rouba, Loudhaief, Rihab, Zucchini-Pascal, N., Nawrot-Esposito, M. P., Fichant, A., Rousset, R., Bonis, M., Osman, D. & Gallet, A., 2023, In: eLife. 12, 34 p., e80179.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Bacillus velezensis SQR9 inhibition to fungal denitrification responsible for decreased N2O emissions from acidic soils

    Huang, Mengyuan, Zhang, Y., Wu, J., Wang, Y., Xie, Y., Geng, Y., Zhang, N., Michelsen, Anders, Li, S., Zhang, R., Shen, Q. & Zou, J., 2023, In: Science of the Total Environment. 885, 10 p., 163789.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Baldinia droopii sp. nov. (Suessiales, Dinophyceae), a new species from a small rainwater rock pool near Tvarminne, south-western Finland

    Hansen, Gert, Daugbjerg, Niels & Moestrup, Øjvind, 2023, In: Phycologia. 62, 1, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Drosophila TNF/TNFRs: At the crossroad between metabolism, immunity, and tissue homeostasis

    Colombani, Julien & Andersen, Ditte Skovaa, 2023, In: FEBS Letters. 597, 19, p. 2416-2432 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  32. Published

    Gambierdiscus (gonyaulacales, dinophyceae) diversity in Vietnamese waters with description of G. vietnamensis sp. nov.

    Nguyen-Ngoc, L., Larsen, Jacob, Doan-Nhu, H., Nguyen, X. V., Chomérat, N., Lundholm, Nina, Phan-Tan, L., Dao, H. V., Nguyen, N. L., Nguyen, H. H. & Van Chu, T., 2023, In: Journal of Phycology. 59, 3, p. 496-517

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Legionella maioricensis sp. nov., a new species isolated from the hot water distribution systems of a hospital and a shopping center during routine sampling

    Crespi, S., Drašar, V., Salvà-Serra, F., Jaén-Luchoro, D., Piñeiro-Iglesias, B., Lindemann, P. C., Aliaga-Lozano, F., Fernandez Juarez, Victor, Coll-García, G., Moore, E. R. B. & Bennasar-Figueras, A., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 1, 12 p., 005686.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Marchantiana pyramus, M. ramulicola and Austroplaca thisbe (Teloschistaceae, lichenized Ascomycota) - three new twig lichens from southern Patagonia

    Søchting, Ulrik, Sancho, L. G. & Arup, U., 2023, In: Lichenologist. 55, 5, p. 377-387 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Mycena species can be opportunist-generalist plant root invaders

    Harder, Christoffer Bugge, Hesling, E., Botnen, S. S., Lorberau, K. E., Dima, B., von Bonsdorff-Salminen, T., Niskanen, T., Jarvis, S. G., Ouimette, A., Hester, A., Hobbie, E. A., Taylor, A. F. S. & Kauserud, H., 2023, In: Environmental Microbiology. 25, 10, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Teuvoahtiana meridionalis, a new species from Patagonia and Antarctica

    Halıcı, M. G., Søchting, Ulrik, Yiğit, M. K. & Arup, U., 2023, In: Nova Hedwigia. 116, 3-4, p. 417-432 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

    Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A Gluten-Free Diet during Pregnancy and Early Life Increases Short Chain Fatty Acid-Producing Bacteria and Regulatory T Cells in Prediabetic NOD Mice

    Johansen, Valdemar Brimnes Ingemann, Færø, D., Buschard, K., Kristiansen, Karsten, Pociot, Flemming, Kiilerich, P., Josefsen, K., Haupt-jorgensen, M. & Antvorskov, J. C., 2023, In: Cells. 12, 12, 15 p., 1567.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A High Resolution, High Throughput Approach for Subcellular Spatial Omics

    CHEN, Ao, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    A Roundtable on the Skjern River Delta and New Narratives in Nature Restoration: A Swampy and Impenetrable Landscape with Unpredictable Natural Dynamics

    Bruun, Hans Henrik, Ejrnæs, R., Brunbjerg, A. K., Larsen, R. E., Dalgas, G. S. & Carstensen, J. S., 2023, Critical Coast. Arkitektens Forlag, 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication

  42. Published

    A YTHDF–PABP interaction is required for m6A-mediated organogenesis in plants

    Tankmar, Mathias Due, Reichel, M., Arribas Hernandez, Laura & Brodersen, Peter, 2023, In: EMBO Reports. 24, 12, 19 p., e57741.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A catalog of bacterial reference genomes from cultivated human oral bacteria

    Li, W., Liang, H., Lin, X., Hu, T., Wu, Z., He, W., Wang, M., Zhang, J., Jie, Zhuye, Jin, X., Xu, X., Wang, J., Yang, H., Zhang, W., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: npj Biofilms and Microbiomes. 9, 1, 13 p., 45.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression

    Li, X., Lozano-Madueno, C., Martinez Alvarez, Laura & Peng, Xu, 2023, In: Nucleic acids symposium series. 51, 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A comprehensive map of human glucokinase variant activity

    Andersen, Sarah Gersing, Cagiada, Matteo, Gebbia, M., Gjesing, A. P., Coté, A. G., Seesankar, G., Li, R., Tabet, D., Weile, J., Stein, Amelie, Gloyn, A. L., Hansen, Torben, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Genome Biology. 24, 1, 23 p., 97.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A consortium of three-bacteria isolated from human feces inhibits formation of atherosclerotic deposits and lowers lipid levels in a mouse model

    Jie, Z., Zhu, Q., Zou, Y., Wu, Q., Qin, M., He, D., Lin, X., Tong, X., Zhang, J., Jie, Z., Luo, W., Xiao, X., Chen, S., Wu, Y., Guo, G., Zheng, S., Li, Y., Lai, W., Yang, H., Wang, J. & 6 others, Xiao, L., Chen, J., Zhang, T., Kristiansen, Karsten, Jia, H. & Zhong, S., 2023, In: iScience. 26, 6, 22 p., 106960.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A corazonin G protein-coupled receptor gene in the tick Ixodes scapularis yields two splice variants, each coding for a specific corazonin receptor

    Hauser, Frank, Pallesen, M., Lehnhoff, J., Li, S., Lind, A. & Grimmelikhuijzen, Cornelis (Cok), 2023, In: Biochemical and Biophysical Research Communications. 666, p. 162-169 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A distinct circular DNA profile intersects with proteome changes in the genotoxic stress-related hSOD1G93A model of ALS

    Gerovska, D., Noer, Julie Boertmann, Qin, Yating, Ain, Q., Januzi, D., Schwab, M., Witte, O. W., Araúzo-Bravo, M. J. & Kretz, A., 2023, In: Cell and Bioscience. 13, 1, 25 p., 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A genome and single-nucleus cerebral cortex transcriptome atlas of the short-finned pilot whale Globicephala macrorhynchus

    Kang, H., Liu, Qun, Seim, I., Zhang, W., Li, H., Gao, H., Lin, W., Lin, M., Zhang, P., Zhang, Y., Gao, H., Wang, Y., Qin, Yating, Liu, M., Dong, L., Yang, Z., Zhang, Y., Han, L., Fan, G. & Li, S., 2023, In: Molecular Ecology Resources. 23, 5, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A global catalog of whole-genome diversity from 233 primate species

    Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S. & 55 others, Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Rogers, J., Farh, K. K. H. & Marques Bonet, T., 2023, In: Science (New York, N.Y.). 380, 6648, p. 906-913 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A host of armor: Prokaryotic immune strategies against mobile genetic elements

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Birkholz, N. & Fineran, P. C., 2023, In: Cell Reports. 42, 7, 14 p., 112672.

    Research output: Contribution to journal › Review › Research › peer-review

  52. Published

    A meta-analysis of plant tissue O2 dynamics

    Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Functional Plant Biology. 50, 7, 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  53. E-pub ahead of print

    A novel protocol for rapid deployment of heart rate data storage tags in Atlantic bluefin tuna Thunnus thynnus reveals cardiac responses to temperature and feeding

    Rouyer, T., Bonhommeau, S., Bernard, S., Kerzerho, V., Derridj, O., Bjarnason, Allal, H., Steffensen, John Fleng, Deguara, S., Wendling, B., Bal, G., Thambithurai, D. & Mckenzie, D. J., 2023, (E-pub ahead of print) In: Journal of Fish Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    A novel splice-affecting HNF1A variant with large population impact on diabetes in Greenland

    Thuesen, A. C. B., Stæger, F. F., Kaci, A., Solheim, M. H., Aukrust, I., Jørsboe, E., Santander, C. G., Andersen, M. K., Li, Z., Gilly, A., Stinson, S. E., Gjesing, A. P., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Grarup, N., Jørgensen, M. E., Zeggini, E., Bjørkhaug, L., Njølstad, P. R. & 3 others, Albrechtsen, Anders, Moltke, Ida & Hansen, Torben, 2023, In: The Lancet Regional Health - Europe. 24, 12 p., 100529.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    A population of stem cells with strong regenerative potential discovered in deer antlers

    Qin, T., Zhang, G., Zheng, Y., Li, S., Yuan, Y., Li, Q., Hu, M., Si, H., Wei, G., Gao, X., Cui, X., Xia, B., Ren, J., Wang, K., Ba, H., Liu, Z., Heller, R., Li, Z., Wang, W., Huang, J. & 2 others, Li, C. & Qiu, Q., 2023, In: Science (New York, N.Y.). 379, 6634, p. 840-847 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    A previously unrecognized superfamily of macro-conotoxins includes an inhibitor of the sensory neuron calcium channel Cav2.3

    Hackney, Celeste Menuet, Flórez Salcedo, P., Mueller, E., Koch, Thomas Lund, Kjelgaard, L. D., Watkins, M., Zachariassen, L., Tuelund, P. S., McArthur, J. R., Adams, D. J., Kristensen, Anders Skov, Olivera, B., Finol-Urdaneta, R. K., Safavi-Hemami, H., Morth, J. P. & Ellgaard, Lars, 2023, In: PLOS Biology. 21, 8, 32 p., e3002217.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    A quantitative trait locus conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots

    Lin, C., Peralta Ogorek, Lucas León, Liu, D., Pedersen, Ole & Sauter, M., 2023, In: New Phytologist. 238, 4, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    A research agenda for nonvascular photoautotrophs under climate change

    Porada, P., Bader, M. Y., Berdugo, M. B., Colesie, C., Ellis, C. J., Giordani, P., Herzschuh, U., Ma, Y., Launiainen, S., Nascimbene, J., Petersen, I., Raggio Quílez, J., Rodríguez-Caballero, E., Rousk, K., Sancho, L. G., Scheidegger, C., Seitz, S., Van Stan, J. T., Veste, M., Weber, B. & 1 others, Weston, D. J., 2023, In: New Phytologist. 237, 5, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    A review of open top chamber (OTC) performance across the ITEX Network

    Hollister, R. D., Elphinstone, C., Henry, G. H. R., Bjorkman, A. D., Klanderud, K., Bjoerk, R. G., Bjoerkman, M. P., Bokhorst, S., Carbognani, M., Cooper, E. J., Dorrepaal, E., Elmendorf, S. C., Fetcher, N., Gallois, E. C., Guomundsson, J., Healey, N. C., Jonsdottir, I. S., Klarenberg, I. J., Oberbauer, S. F., Macek, P. & 7 others, May, J. L., Mereghetti, A., Molau, U., Petraglia, A., Rinnan, Riikka, Rixen, C. & Wookey, P. A., 2023, In: Arctic Science. 9, 2, 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  60. Published

    A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization

    Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, Yang, H., Wang, J., Seim, I. & Fan, G., 2023, In: Nature Communications. 14, 1, 15 p., 5630.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    A single-chain variable fragment selected against a conformational epitope of a recombinantly produced snake toxin using phage display

    Rimbault, C., Knudsen, P. D., Damsbo, A., Boddum, K., Ali, H., Hackney, Celeste Menuet, Ellgaard, Lars, Bohn, M. & Laustsen, A. H., 2023, In: New Biotechnology. 76, p. 23-32 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    A targeted multi-proteomics approach generates a blueprint of the ciliary ubiquitinome

    G. Aslanyan, M., Doornbos, C., D. Diwan, G., Anvarian, Zeinab, Beyer, T., Junger, K., E. C. van Beersum, S., Russell, R., Ueffing, M., Ludwig, A., Boldt, K., Pedersen, Lotte Bang & Roepman, R., 2023, In: Frontiers in Cell and Developmental Biology. 11, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia)

    Gonzalez, B. C., González, V. L., Martínez, A., Worsaae, Katrine & Osborn, K. J., 2023, In: Molecular Phylogenetics and Evolution. 185, 11 p., 107811.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    A “grappling hook” interaction connects self-assembly and chaperone activity of Nucleophosmin 1

    Saluri, M., Leppert, A., Gese, G. V., Sahin, Cagla, Lama, D., Kaldmäe, M., Chen, G., Elofsson, A., Allison, T. M., Arsenian-henriksson, M., Johansson, J., Lane, D. P., Hällberg, B. M. & Landreh, M., 2023, In: PNAS Nexus. 2, 2, 9 p., pgac303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    ASSESSING CRYPTIC MARINE BIODIVERSITY: Environmental DNA detection, microhabitat dependences and functional ecology of cryptic fauna

    Brodnicke, O. B., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.

    Research output: Book/Report › Ph.D. thesis › Research

  66. Published

    Abrupt permafrost thaw triggers activity of copiotrophs and microbiome predators

    Scheel, M., Zervas, A., Rijkers, R., Tveit, A. T., Ekelund, Flemming, Campuzano Jiménez, F., Christensen, T. R. & Jacobsen, C. S., 2023, In: FEMS Microbiology Ecology. 99, 11, 12 p., fiad123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Accurate protein stability predictions from homology models

    Valanciute, A., Nygaard, L., Zschach, Henrike, Maglegaard Jepsen, M., Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 66-73 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Activation and substrate specificity of the human P4-ATPase ATP8B1

    Dieudonné, T., Kümmerer, Felix, Laursen, M. J., Stock, C., Flygaard, R. K., Khalid, S., Lenoir, G., Lyons, J. A., Lindorff-Larsen, Kresten & Nissen, P., 2023, In: Nature Communications. 14, 1, 14 p., 7492.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Adaptations of Pseudoxylaria towards a comb-associated lifestyle in fungus-farming termite colonies

    Fricke, J., Schalk, F., Kreuzenbeck, N. B., Seibel, E., Hoffmann, J., Dittmann, G., Conlon, B. H., Guo, H., Wilhelm de Beer, Z., Vassão, D. G., Gleixner, G., Poulsen, Michael & Beemelmanns, C., 2023, In: ISME Journal. 17, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Administration of vitamin E and C enhances immunological and biochemical responses against toxicity of silver nanoparticles in grass carp (Ctenopharyngodon idella)

    Iqbal, K. J., Majeed, H., Iqbal, K. J., Asghar, M., Azmat, H., Fatima, M., Khan, N., Baboo, I., Tehseen, A., Ali, W., Saeed, Usama, Khizar, A., Fatima, A., Nisa, S. & Davies, S. J., 2023, In: PLoS ONE. 18, 4, 21 p., e0284285.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Advances in mass spectrometry to unravel the structure and function of protein condensates

    Sahin, Cagla, Leppert, A. & Landreh, M., 2023, In: Nature Protocols. 18, p. 3653–3661 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Age-dependent changes in the gut microbiota and serum metabolome correlate with renal function and human aging

    Sun, L., Li, Z., Hu, C., Ding, J., Zhou, Q., Pang, G., Wu, Z., Yang, R., Li, S., Li, J., Cai, J., Sun, Y., Li, R., Zhen, H., Sun, S., Zhang, J., Fang, M., Chen, Z., Lv, Y., Cao, Q. & 36 others, Sun, Y., Gong, R., Huang, Z., Duan, Y., Liu, H., Dong, J., Li, J., Ruan, J., Lu, H., He, B., Li, N., Li, T., Xue, W., Li, Y., Shen, J., Yang, F., Zhao, C., Liang, Q., Zhang, M., Chen, C., Gong, H., Hou, Y., Wang, J., Zhang, Y., Yang, H., Zhu, S., Xiao, L., Jin, Z., Guo, H., Zhao, P., Brix, S., Xu, X., Jia, H., Kristiansen, Karsten, Yang, Z. & Nie, C., 2023, In: Aging Cell. 22, 12, 20 p., e14028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Allometric relationships between leaf and petiole traits across 31 floating-leaved plants reveal a different adaptation pattern from terrestrial plants

    Liu, Y., Liu, H., Båstrup-Spohr, Lars, Li, Z., Li, W., Pan, J. & Cao, Y., 2023, In: Annals of Botany. 131, 3, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Amino acids and the changing face of the α-cell

    Hamilton, Alexander, Eliasson, L. & Knudsen, Jakob Grunnet, 2023, In: Peptides. 166, 7 p., 171039.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    An insulin hypersecretion phenotype precedes pancreatic β cell failure in MODY3 patient-specific cells

    Hermann, F. M., Kjærgaard, M. F., Tian, C., Tiemann, Ulf, Jackson, Abigail Laura, Olsen, L. R., Kraft, M., Carlsson, P. O., Elfving, I. M., Kettunen, J. L. T., Tuomi, T., Novak, Ivana & Semb, Tor Henrik, 2023, In: Cell Stem Cell. 30, 1, p. 38-51.e8 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    An overview of plasmid transfer in the plant microbiome

    Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

    Louis, Marie Georgette Yolande J, Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, Eline, O'Brien, J., Post, K., Racimo, Fernando, Rogan, E., Rosel, P. E., Sinding, Mikkel Holger Strander, van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E. & Foote, A. D., 2023, In: Nature Communications. 14, 13 p., 4020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants

    von Bülow, Sören, Sikora, M., Blanc, F. E. C., Covino, R. & Hummer, G., 2023, In: PLOS Computational Biology. 19, 1, 15 p., e1010822.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Application of whole genome sequencing data in population genetics: identifying sex-linked scaffolds and inferring admixture in a unique cattle population

    Nursyifa, Casia, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 225 p.

    Research output: Book/Report › Ph.D. thesis › Research

  82. Published

    Aquaporin water channels affect the response of conventional anticancer therapies of 3D grown breast cancer cells

    Edamana, S., Pedersen, Stine Helene Falsig & Nejsum, L. N., 2023, In: Biochemical and Biophysical Research Communications. 639, p. 126-133 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Aquatic Plants of Northern and Central Europe including Britain and Ireland: Monumental vandplantebog

    Bruun, Hans Henrik, 2023, In: Urt. 47, 3, p. 32-33 2 p.

    Research output: Contribution to journal › Literature review › Communication

  84. Published

    Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins

    Pesce, Francesco, Newcombe, Estella Anne, Seiffert, P., Tranchant, E. E., Olsen, Johan Gotthardt, Grace, C. R., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2023, In: Biophysical Journal. 122, 2, p. 310-321 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Association of SLC12A1 and GLUR4 Ion Transporters with Neoadjuvant Chemoresistance in Luminal Locally Advanced Breast Cancer

    Justo-Garrido, M., López-Saavedra, A., Alcaraz, N., Cortés-González, C. C., Oñate-Ocaña, L. F., Caro-Sánchez, C. H. S., Castro-Hernández, C., Arriaga-Canon, C., Díaz-Chávez, J. & Herrera, L. A., 2023, In: International Journal of Molecular Sciences. 24, 22, 16 p., 16104.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Associational Resistance to Predation by Protists in a Mixed Species Biofilm

    Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Associative learning in the box jellyfish Tripedalia cystophora

    Bielecki, J., Dam Nielsen, S. K., Nachman, Gøsta Støger & Garm, Anders Lydik, 2023, In: Current Biology. 33, 19, p. 4150-4159.e5 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

    Weng, Z., Ruan, F., Chen, W., Chen, Z., Xie, Y., Luo, M., Xie, Z., Zhang, C., Wang, J., Sun, Y., Fang, Y., Guo, M., Tan, C., Chen, W., Tong, Y., Li, Y., Wang, H. & Tang, C., 2023, In: Genome Biology. 24, 1, 29 p., 61.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Bacterial bioindicators enable biological status classification along the continental Danube river

    Fontaine, L., Pin, L., Savio, D., Friberg, N., Kirschner, A. K. T., Farnleitner, A. H. & Eiler, A., 2023, In: Communications Biology . 6, 1, 11 p., 862.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs

    Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Basal level of ppGpp coordinates Escherichia coli cell heterogeneity and ampicillin resistance and persistence

    Grucela, Paulina Katarzyna & Zhang, Yong, 2023, In: Microbial Cell. 10, 11, p. 248-260 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Benchmarking RNA Editing Detection Tools

    Morales, D. R., Rennie, Sarah & Uchida, S., 2023, In: BioTech. 12, 3, 18 p., 56.

    Research output: Contribution to journal › Review › Research › peer-review

  93. Published

    Between inflammation, homeostasis and adaptation: Systemic and tissue-specific responses to maternal immune activation

    Hansen, Signe Schmidt Kjølner, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 177 p.

    Research output: Book/Report › Ph.D. thesis › Research

  94. Published

    Bi-directional interactions between anti-diabetics and human gut microbiota

    Ren, H., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/Report › Ph.D. thesis › Research

  95. Published

    Biofilm formation and cell plasticity drive diazotrophy in an anoxygenic phototrophic bacterium

    Fernandez Juarez, Victor, Hallstrøm, S., Pacherres, Cesar, Wang, J., Coll-Garcia, G., Kühl, Michael & Riemann, Lasse, 2023, In: Applied and Environmental Microbiology. 89, 11, p. 1-19 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention

    Kurth, J. K., Albrecht, M., Glaser, K., Karsten, U., Vestergaard, G., Armbruster, M., Kublik, S., Schmid, C. A. O., Schloter, M. & Schulz, S., 2023, In: Frontiers in Microbiology. 14, 16 p., 1169958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Biology and ecology of Juniperus drupacea Labill

    Boratyński, A., Dönmez, A. A., Bou Dagher-Kharrat, M., Romo, Á., Tan, K., Ok, T., Iszkuło, G., Sobierajska, K. & Marcysiak, K., 2023, In: Dendrobiology. 90, p. 1-29 29 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties

    Holm, S., Larsen, R. M., Holst, C. M., Heide-Jørgensen, M. P., Steffensen, John Fleng, Stevnsner, T. & Larsen, K., 2023, In: Biochimie. 206, p. 136-149 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Bridging the gap in African biodiversity genomics and bioinformatics

    Sharaf, A., Ndiribe, C. C., Omotoriogun, T. C., Abueg, L., Badaoui, B., Badiane Markey, F. J., Beedessee, G., Diouf, D., Duru, V. C., Ebuzome, C., Eziuzor, S. C., Jaufeerally Fakim, Y., Formenti, G., Ghanmi, N., Guerfali, F. Z., Houaga, I., Ideozu, J. E., Katee, S. M., Khayi, S., Kuja, J. O. & 16 others, Kwon-Ndung, E. H., Marks, R. A., Moila, A. M., Mungloo-Dilmohamud, Z., Muzemil, S., Nigussie, H., Osuji, J. O., Ras, V., Tchiechoua, Y. H., Zoclanclounon, Y. A. B., Tolley, K. A., Ziyomo, C., Mapholi, N., Muigai, A. W. T., Djikeng, A. & Ebenezer, T. G. E., 2023, In: Nature Biotechnology. 41, 9, p. 1348-1354 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network

    Pan, X., Ma, Z., Sun, X., Li, H., Zhang, T., Zhao, C., Wang, N., Heller, Rasmus, Hung Wong, W., Wang, W., Jiang, Y. & Wang, Y., 2023, In: Genomics, Proteomics and Bioinformatics. 21, 3, p. 632-648 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries

    Cachera, P., Olsson, H., Coumou, H., Jensen, M. L., Sánchez, B., Strucko, T., Van den broek, M., Daran, J., Jensen, M., Sonnenschein, N., Lisby, Michael & Mortensen, U., 2023, In: Nucleic acids symposium series. 51, 17, 14 p., e91.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis

    Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.

    Research output: Contribution to journal › Journal article › Research › peer-review

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