- 2023
- Published
A Gluten-Free Diet during Pregnancy and Early Life Increases Short Chain Fatty Acid-Producing Bacteria and Regulatory T Cells in Prediabetic NOD Mice
Johansen, Valdemar Brimnes Ingemann, Færø, D., Buschard, K., Kristiansen, Karsten, Pociot, Flemming, Kiilerich, P., Josefsen, K., Haupt-jorgensen, M. & Antvorskov, J. C., 2023, In: Cells. 12, 12, 15 p., 1567.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A High Resolution, High Throughput Approach for Subcellular Spatial Omics
CHEN, Ao, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
A Roundtable on the Skjern River Delta and New Narratives in Nature Restoration: A Swampy and Impenetrable Landscape with Unpredictable Natural Dynamics
Bruun, Hans Henrik, Ejrnæs, R., Brunbjerg, A. K., Larsen, R. E., Dalgas, G. S. & Carstensen, J. S., 2023, Critical Coast. Arkitektens Forlag, 20 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication
- Published
A YTHDF–PABP interaction is required for m6A-mediated organogenesis in plants
Tankmar, Mathias Due, Reichel, M., Arribas Hernandez, Laura & Brodersen, Peter, 2023, In: EMBO Reports. 24, 12, 19 p., e57741.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
A brief history of metal recruitment in protozoan predation
Yu, Y., Li, Y. P., Ren, K., Hao, X., Fru, E. C., Rønn, Regin, Rivera, W. L., Becker, K., Feng, R., Yang, J. & Rensing, C., 2023, (E-pub ahead of print) In: Trends in Microbiology.Research output: Contribution to journal › Review › Research › peer-review
- Published
A catalog of bacterial reference genomes from cultivated human oral bacteria
Li, W., Liang, H., Lin, X., Hu, T., Wu, Z., He, W., Wang, M., Zhang, J., Jie, Zhuye, Jin, X., Xu, X., Wang, J., Yang, H., Zhang, W., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: npj Biofilms and Microbiomes. 9, 1, 13 p., 45.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression
Li, X., Lozano-Madueno, C., Martinez Alvarez, Laura & Peng, Xu, 2023, In: Nucleic acids symposium series. 51, 4, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comprehensive map of human glucokinase variant activity
Andersen, Sarah Gersing, Cagiada, Matteo, Gebbia, M., Gjesing, A. P., Coté, A. G., Seesankar, G., Li, R., Tabet, D., Weile, J., Stein, Amelie, Gloyn, A. L., Hansen, Torben, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Genome Biology. 24, 1, 23 p., 97.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A consortium of three-bacteria isolated from human feces inhibits formation of atherosclerotic deposits and lowers lipid levels in a mouse model
Jie, Z., Zhu, Q., Zou, Y., Wu, Q., Qin, M., He, D., Lin, X., Tong, X., Zhang, J., Jie, Z., Luo, W., Xiao, X., Chen, S., Wu, Y., Guo, G., Zheng, S., Li, Y., Lai, W., Yang, H., Wang, J. & 6 others, , 2023, In: iScience. 26, 6, 22 p., 106960.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A corazonin G protein-coupled receptor gene in the tick Ixodes scapularis yields two splice variants, each coding for a specific corazonin receptor
Hauser, Frank, Pallesen, M., Lehnhoff, J., Li, S., Lind, A. & Grimmelikhuijzen, Cornelis (Cok), 2023, In: Biochemical and Biophysical Research Communications. 666, p. 162-169 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A distinct circular DNA profile intersects with proteome changes in the genotoxic stress-related hSOD1G93A model of ALS
Gerovska, D., Noer, Julie Boertmann, Qin, Yating, Ain, Q., Januzi, D., Schwab, M., Witte, O. W., Araúzo-Bravo, M. J. & Kretz, A., 2023, In: Cell and Bioscience. 13, 1, 25 p., 170.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A genome and single-nucleus cerebral cortex transcriptome atlas of the short-finned pilot whale Globicephala macrorhynchus
Kang, H., Liu, Qun, Seim, I., Zhang, W., Li, H., Gao, H., Lin, W., Lin, M., Zhang, P., Zhang, Y., Gao, H., Wang, Y., Qin, Yating, Liu, M., Dong, L., Yang, Z., Zhang, Y., Han, L., Fan, G. & Li, S., 2023, In: Molecular Ecology Resources. 23, 5, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A global catalog of whole-genome diversity from 233 primate species
Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S. & 55 others, , 2023, In: Science (New York, N.Y.). 380, 6648, p. 906-913 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A host of armor: Prokaryotic immune strategies against mobile genetic elements
Mayo-Muñoz, D., Pinilla Redondo, Rafael, Birkholz, N. & Fineran, P. C., 2023, In: Cell Reports. 42, 7, 14 p., 112672.Research output: Contribution to journal › Review › Research › peer-review
- Published
A meta-analysis of plant tissue O2 dynamics
Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Functional Plant Biology. 50, 7, 13 p.Research output: Contribution to journal › Review › Research › peer-review
- E-pub ahead of print
A novel protocol for rapid deployment of heart rate data storage tags in Atlantic bluefin tuna Thunnus thynnus reveals cardiac responses to temperature and feeding
Rouyer, T., Bonhommeau, S., Bernard, S., Kerzerho, V., Derridj, O., Bjarnason, Allal, H., Steffensen, John Fleng, Deguara, S., Wendling, B., Bal, G., Thambithurai, D. & Mckenzie, D. J., 2023, (E-pub ahead of print) In: Journal of Fish Biology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel splice-affecting HNF1A variant with large population impact on diabetes in Greenland
Thuesen, A. C. B., Stæger, F. F., Kaci, A., Solheim, M. H., Aukrust, I., Jørsboe, E., Santander, C. G., Andersen, M. K., Li, Z., Gilly, A., Stinson, S. E., Gjesing, A. P., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Grarup, N., Jørgensen, M. E., Zeggini, E., Bjørkhaug, L., Njølstad, P. R. & 3 others, , 2023, In: The Lancet Regional Health - Europe. 24, 12 p., 100529.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A population of stem cells with strong regenerative potential discovered in deer antlers
Qin, T., Zhang, G., Zheng, Y., Li, S., Yuan, Y., Li, Q., Hu, M., Si, H., Wei, G., Gao, X., Cui, X., Xia, B., Ren, J., Wang, K., Ba, H., Liu, Z., Heller, R., Li, Z., Wang, W., Huang, J. & 2 others, , 2023, In: Science (New York, N.Y.). 379, 6634, p. 840-847 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A previously unrecognized superfamily of macro-conotoxins includes an inhibitor of the sensory neuron calcium channel Cav2.3
Hackney, Celeste Menuet, Flórez Salcedo, P., Mueller, E., Koch, Thomas Lund, Kjelgaard, L. D., Watkins, M., Zachariassen, L., Tuelund, P. S., McArthur, J. R., Adams, D. J., Kristensen, Anders Skov, Olivera, B., Finol-Urdaneta, R. K., Safavi-Hemami, H., Morth, J. P. & Ellgaard, Lars, 2023, In: PLOS Biology. 21, 8, 32 p., e3002217.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A quantitative trait locus conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots
Lin, C., Peralta Ogorek, Lucas León, Liu, D., Pedersen, Ole & Sauter, M., 2023, In: New Phytologist. 238, 4, 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A research agenda for nonvascular photoautotrophs under climate change
Porada, P., Bader, M. Y., Berdugo, M. B., Colesie, C., Ellis, C. J., Giordani, P., Herzschuh, U., Ma, Y., Launiainen, S., Nascimbene, J., Petersen, I., Raggio Quílez, J., Rodríguez-Caballero, E., Rousk, K., Sancho, L. G., Scheidegger, C., Seitz, S., Van Stan, J. T., Veste, M., Weber, B. & 1 others, , 2023, In: New Phytologist. 237, 5, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A review of open top chamber (OTC) performance across the ITEX Network
Hollister, R. D., Elphinstone, C., Henry, G. H. R., Bjorkman, A. D., Klanderud, K., Bjoerk, R. G., Bjoerkman, M. P., Bokhorst, S., Carbognani, M., Cooper, E. J., Dorrepaal, E., Elmendorf, S. C., Fetcher, N., Gallois, E. C., Guomundsson, J., Healey, N. C., Jonsdottir, I. S., Klarenberg, I. J., Oberbauer, S. F., Macek, P. & 7 others, , 2023, In: Arctic Science. 9, 2, 14 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization
Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, , 2023, In: Nature Communications. 14, 1, 15 p., 5630.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A single-chain variable fragment selected against a conformational epitope of a recombinantly produced snake toxin using phage display
Rimbault, C., Knudsen, P. D., Damsbo, A., Boddum, K., Ali, H., Hackney, Celeste Menuet, Ellgaard, Lars, Bohn, M. & Laustsen, A. H., 2023, In: New Biotechnology. 76, p. 23-32 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A targeted multi-proteomics approach generates a blueprint of the ciliary ubiquitinome
G. Aslanyan, M., Doornbos, C., D. Diwan, G., Anvarian, Zeinab, Beyer, T., Junger, K., E. C. van Beersum, S., Russell, R., Ueffing, M., Ludwig, A., Boldt, K., Pedersen, Lotte Bang & Roepman, R., 2023, In: Frontiers in Cell and Developmental Biology. 11, 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia)
Gonzalez, B. C., González, V. L., Martínez, A., Worsaae, Katrine & Osborn, K. J., 2023, In: Molecular Phylogenetics and Evolution. 185, 11 p., 107811.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A “grappling hook” interaction connects self-assembly and chaperone activity of Nucleophosmin 1
Saluri, M., Leppert, A., Gese, G. V., Sahin, Cagla, Lama, D., Kaldmäe, M., Chen, G., Elofsson, A., Allison, T. M., Arsenian-henriksson, M., Johansson, J., Lane, D. P., Hällberg, B. M. & Landreh, M., 2023, In: PNAS Nexus. 2, 2, 9 p., pgac303.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ASSESSING CRYPTIC MARINE BIODIVERSITY: Environmental DNA detection, microhabitat dependences and functional ecology of cryptic fauna
Brodnicke, O. B., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Abrupt permafrost thaw triggers activity of copiotrophs and microbiome predators
Scheel, M., Zervas, A., Rijkers, R., Tveit, A. T., Ekelund, Flemming, Campuzano Jiménez, F., Christensen, T. R. & Jacobsen, C. S., 2023, In: FEMS Microbiology Ecology. 99, 11, 12 p., fiad123.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Accurate protein stability predictions from homology models
Valanciute, A., Nygaard, L., Zschach, Henrike, Maglegaard Jepsen, M., Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 66-73 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activation and substrate specificity of the human P4-ATPase ATP8B1
Dieudonné, T., Kümmerer, Felix, Laursen, M. J., Stock, C., Flygaard, R. K., Khalid, S., Lenoir, G., Lyons, J. A., Lindorff-Larsen, Kresten & Nissen, P., 2023, In: Nature Communications. 14, 1, 14 p., 7492.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota
Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adaptations of Pseudoxylaria towards a comb-associated lifestyle in fungus-farming termite colonies
Fricke, J., Schalk, F., Kreuzenbeck, N. B., Seibel, E., Hoffmann, J., Dittmann, G., Conlon, B. H., Guo, H., Wilhelm de Beer, Z., Vassão, D. G., Gleixner, G., Poulsen, Michael & Beemelmanns, C., 2023, In: ISME Journal. 17, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Administration of vitamin E and C enhances immunological and biochemical responses against toxicity of silver nanoparticles in grass carp (Ctenopharyngodon idella)
Iqbal, K. J., Majeed, H., Iqbal, K. J., Asghar, M., Azmat, H., Fatima, M., Khan, N., Baboo, I., Tehseen, A., Ali, W., Saeed, Usama, Khizar, A., Fatima, A., Nisa, S. & Davies, S. J., 2023, In: PLoS ONE. 18, 4, 21 p., e0284285.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Advances in mass spectrometry to unravel the structure and function of protein condensates
Sahin, Cagla, Leppert, A. & Landreh, M., 2023, In: Nature Protocols. 18, p. 3653–3661 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Age-dependent changes in the gut microbiota and serum metabolome correlate with renal function and human aging
Sun, L., Li, Z., Hu, C., Ding, J., Zhou, Q., Pang, G., Wu, Z., Yang, R., Li, S., Li, J., Cai, J., Sun, Y., Li, R., Zhen, H., Sun, S., Zhang, J., Fang, M., Chen, Z., Lv, Y., Cao, Q. & 36 others, , 2023, In: Aging Cell. 22, 12, 20 p., e14028.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Allometric relationships between leaf and petiole traits across 31 floating-leaved plants reveal a different adaptation pattern from terrestrial plants
Liu, Y., Liu, H., Båstrup-Spohr, Lars, Li, Z., Li, W., Pan, J. & Cao, Y., 2023, In: Annals of Botany. 131, 3, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Amino acids and the changing face of the α-cell
Hamilton, Alexander, Eliasson, L. & Knudsen, Jakob Grunnet, 2023, In: Peptides. 166, 7 p., 171039.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An insulin hypersecretion phenotype precedes pancreatic β cell failure in MODY3 patient-specific cells
Hermann, F. M., Kjærgaard, M. F., Tian, C., Tiemann, Ulf, Jackson, Abigail Laura, Olsen, L. R., Kraft, M., Carlsson, P. O., Elfving, I. M., Kettunen, J. L. T., Tuomi, T., Novak, Ivana & Semb, Tor Henrik, 2023, In: Cell Stem Cell. 30, 1, p. 38-51.e8 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An overview of plasmid transfer in the plant microbiome
Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters
Louis, Marie Georgette Yolande J, Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, Eline, O'Brien, J., Post, K., Racimo, Fernando, Rogan, E., Rosel, P. E., Sinding, Mikkel Holger Strander, van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E. & Foote, A. D., 2023, In: Nature Communications. 14, 13 p., 4020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants
von Bülow, Sören, Sikora, M., Blanc, F. E. C., Covino, R. & Hummer, G., 2023, In: PLOS Computational Biology. 19, 1, 15 p., e1010822.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antifouling potential of enzymes applied to reverse osmosis membranes
Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of whole genome sequencing data in population genetics: identifying sex-linked scaffolds and inferring admixture in a unique cattle population
Nursyifa, Casia, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 225 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Aquaporin water channels affect the response of conventional anticancer therapies of 3D grown breast cancer cells
Edamana, S., Pedersen, Stine Helene Falsig & Nejsum, L. N., 2023, In: Biochemical and Biophysical Research Communications. 639, p. 126-133 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Aquatic Plants of Northern and Central Europe including Britain and Ireland: Monumental vandplantebog
Bruun, Hans Henrik, 2023, In: Urt. 47, 3, p. 32-33 2 p.Research output: Contribution to journal › Literature review › Communication
- Published
Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins
Pesce, Francesco, Newcombe, Estella Anne, Seiffert, P., Tranchant, E. E., Olsen, Johan Gotthardt, Grace, C. R., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2023, In: Biophysical Journal. 122, 2, p. 310-321 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association of SLC12A1 and GLUR4 Ion Transporters with Neoadjuvant Chemoresistance in Luminal Locally Advanced Breast Cancer
Justo-Garrido, M., López-Saavedra, A., Alcaraz, N., Cortés-González, C. C., Oñate-Ocaña, L. F., Caro-Sánchez, C. H. S., Castro-Hernández, C., Arriaga-Canon, C., Díaz-Chávez, J. & Herrera, L. A., 2023, In: International Journal of Molecular Sciences. 24, 22, 16 p., 16104.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Associational Resistance to Predation by Protists in a Mixed Species Biofilm
Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Associative learning in the box jellyfish Tripedalia cystophora
Bielecki, J., Dam Nielsen, S. K., Nachman, Gøsta Støger & Garm, Anders Lydik, 2023, In: Current Biology. 33, 19, p. 4150-4159.e5 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes
Weng, Z., Ruan, F., Chen, W., Chen, Z., Xie, Y., Luo, M., Xie, Z., Zhang, C., Wang, J., Sun, Y., Fang, Y., Guo, M., Tan, C., Chen, W., Tong, Y., Li, Y., Wang, H. & Tang, C., 2023, In: Genome Biology. 24, 1, 29 p., 61.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial bioindicators enable biological status classification along the continental Danube river
Fontaine, L., Pin, L., Savio, D., Friberg, N., Kirschner, A. K. T., Farnleitner, A. H. & Eiler, A., 2023, In: Communications Biology . 6, 1, 11 p., 862.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs
Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Basal level of ppGpp coordinates Escherichia coli cell heterogeneity and ampicillin resistance and persistence
Grucela, Paulina Katarzyna & Zhang, Yong, 2023, In: Microbial Cell. 10, 11, p. 248-260 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Benchmarking RNA Editing Detection Tools
Morales, D. R., Rennie, Sarah & Uchida, S., 2023, In: BioTech. 12, 3, 18 p., 56.Research output: Contribution to journal › Review › Research › peer-review
- Published
Between inflammation, homeostasis and adaptation: Systemic and tissue-specific responses to maternal immune activation
Hansen, Signe Schmidt Kjølner, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 177 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Bi-directional interactions between anti-diabetics and human gut microbiota
Ren, H., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Biofilm formation and cell plasticity drive diazotrophy in an anoxygenic phototrophic bacterium
Fernandez Juarez, Victor, Hallstrøm, S., Pacherres, Cesar, Wang, J., Coll-Garcia, G., Kühl, Michael & Riemann, Lasse, 2023, In: Applied and Environmental Microbiology. 89, 11, p. 1-19 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention
Kurth, J. K., Albrecht, M., Glaser, K., Karsten, U., Vestergaard, G., Armbruster, M., Kublik, S., Schmid, C. A. O., Schloter, M. & Schulz, S., 2023, In: Frontiers in Microbiology. 14, 16 p., 1169958.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties
Holm, S., Larsen, R. M., Holst, C. M., Heide-Jørgensen, M. P., Steffensen, John Fleng, Stevnsner, T. & Larsen, K., 2023, In: Biochimie. 206, p. 136-149 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bridging the gap in African biodiversity genomics and bioinformatics
Sharaf, A., Ndiribe, C. C., Omotoriogun, T. C., Abueg, L., Badaoui, B., Badiane Markey, F. J., Beedessee, G., Diouf, D., Duru, V. C., Ebuzome, C., Eziuzor, S. C., Jaufeerally Fakim, Y., Formenti, G., Ghanmi, N., Guerfali, F. Z., Houaga, I., Ideozu, J. E., Katee, S. M., Khayi, S., Kuja, J. O. & 16 others, , 2023, In: Nature Biotechnology. 41, 9, p. 1348-1354 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network
Pan, X., Ma, Z., Sun, X., Li, H., Zhang, T., Zhao, C., Wang, N., Heller, Rasmus, Hung Wong, W., Wang, W., Jiang, Y. & Wang, Y., 2023, In: Genomics, Proteomics and Bioinformatics. 21, 3, p. 632-648 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries
Cachera, P., Olsson, H., Coumou, H., Jensen, M. L., Sánchez, B., Strucko, T., Van den broek, M., Daran, J., Jensen, M., Sonnenschein, N., Lisby, Michael & Mortensen, U., 2023, In: Nucleic acids symposium series. 51, 17, 14 p., e91.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis
Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?
Tong, Shuai, Ashikari, M., Nagai, K. & Pedersen, Ole, 2023, In: Rice. 16, 1, 20 p., 13.Research output: Contribution to journal › Review › Research › peer-review
- E-pub ahead of print
Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia
Mansour, J. S., Hansen, Per Juel, Leroux, C. & Not, F., 2023, (E-pub ahead of print) In: Open Research Europe.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cationic amphiphilic antihistamines inhibit STAT3 via Ca2+-dependent lysosomal H+ efflux
Liu, B., Chen, R., Zhang, Y., Huang, J., Luo, Y., Rosthøj, Susanne, Zhao, C. & Jaattela, Marja, 2023, In: Cell Reports. 42, 2, 20 p., 112137.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell Plasticity of Marine Mediterranean Diazotrophs to Climate Change Factors and Nutrient Regimes
Fernandez Juarez, Victor, Zech, E. H., Pol-Pol, E. & Agawin, N. S. R., 2023, In: Diversity. 15, 3, 18 p., 316.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in the functional diversity of modern bird species over the last million years
Germain, Ryan Ross, Feng, S., Buffan, L., Carmona, C. P., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, Zhang, G. & Nogues, David Bravo, 2023, In: PNAS. 120, 7, 9 p., e2201945119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of industrially-produced Lacticaseibacillus rhamnosus GG and Lactobacillus acidophilus LA-5: Analysis of genomic integrity, transcriptome and phenotypes
Strickertsson, Marianne Stage, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 206 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Chemical Stimulation of Heterocyte Differentiation by the Feather Moss Hylocomium splendens: a Potential New Step in Plant-Cyanobacteria Symbioses
Alvarenga, Danillo Oliveira, Elmdam, I. V., Timm, A. B. & Rousk, Kathrin, 2023, In: Microbial Ecology. 86, p. 419-430 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis)
Sahu, S. K., Liu, M., Chen, Y., Gui, J., Fang, D., Chen, X., Yang, T., He, C., Cheng, L., Yang, J., Sahu, D. N., Li, L., Wang, H., Mu, W., Wei, J., Liu, J., Zhao, Y., Zhang, S., Lisby, M., Liu, X. & 4 others, , 2023, In: Scientific Data. 10, 1, 13 p., 512.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromosome-scale genomes of commercially important mahoganies, Swietenia macrophylla and Khaya senegalensis
Sahu, S. K., Liu, M., Wang, G., Chen, Y., Li, R., Fang, D., Sahu, D. N., Mu, W., Wei, J., Liu, J., Zhao, Y., Zhang, S., Lisby, Michael, Liu, X., Xu, X., Li, L., Wang, S., Liu, Huan & He, C., 2023, In: Scientific Data. 10, 9 p., 832.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chronic acidosis rewires cancer cell metabolism through PPARα signaling
Rolver, M. G., Holland, L. K. K., Ponniah, M., Prasad, N. S., Yao, Jiayi, Schnipper, J., Kramer, S., Elingaard-Larsen, L., Pedraz-Cuesta, E., Liu, B., Pardo, L. A., Maeda, K., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2023, In: International Journal of Cancer. 152, 8, 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cilia and flagella
Pedersen, Lotte Bang, Jurisch-Yaksi, N., Schmid, F. M. & Christensen, Søren Tvorup, 2023, Encyclopedia of Cell Biology, Second Edition. Bradshaw, R. A., Hart, G. W. & Stahl, P. D. (eds.). 2 ed. Oxford: Elsevier, Vol. 3. p. 164-188 25 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Circular and Circulating DNA in Inflammatory Bowel Disease: From Pathogenesis to Potential Molecular Therapies
Di Vincenzo, F., Yadid, Y., Petito, V., Emoli, V., Masi, L., Gerovska, D., Araúzo-Bravo, M. J., Gasbarrini, A., Regenberg, Birgitte & Scaldaferri, F., 2023, In: Cells. 12, 15, 29 p., 1953.Research output: Contribution to journal › Review › Research › peer-review
- Published
Clinical diagnosis of genetic disorders at both single-nucleotide and chromosomal levels based on BGISEQ-500 platform
Liu, Y., Mao, L., Huang, H., Li, W., Man, J., Zhang, W., Wang, L., Li, L., Sun, Y., Zhai, T., Guo, X., Du, L., Huang, J., Li, H., Wan, Y. & Wei, X., 2023, In: Human Genome Variation. 10, 1, 43 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: testing molecular clock hypotheses with genomic data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.Research output: Working paper › Preprint › Research
- Published
Cloning and deorphanization of three inotocin (insect oxytocin/vasopressin-like) receptors and their ligand from the tick Ixodes scapularis
Hauser, Frank, Al-Ribaty, T., Stebegg, M., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2023, In: Biochemical and Biophysical Research Communications. 680, p. 34-41 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Close coupling of plant functional types with soil microbial community composition drives soil carbon and nutrient cycling in tundra heath
Koranda, M., Rinnan, Riikka & Michelsen, Anders, 2023, In: Plant and Soil. 488, p. 551-572 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Co-diversification of an intestinal Mycoplasma and its salmonid host
Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Coexisting with carnivores: insights into local attitudes toward African wild dogs (Lycaon pictus) in the Maasai Mara, Kenya
Cornu, L., Broekhuis, F., Kavwele, C. M., Mogensen, N., Sakat, D. & Briefer, Elodie, 2023, (E-pub ahead of print) In: Human Dimensions of Wildlife.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo
Quinn, Liam James Elgaard, Garcia Erill, Genís, Santander, Cindy, Brüniche-Olsen, Anna, Liu, Xiaodong, Sinding, Mikkel Holger Strander, Heaton, M. P., Smith, T. P. L., Chrzanová Pecnerová, Patrícia, Bertola, Laura, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, De Jager, Deon, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus & Moltke, Ida, 2023, In: Molecular Ecology. 32, 8, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining Experiments and Simulations to Examine the Temperature-Dependent Behavior of a Disordered Protein
Pesce, Francesco & Lindorff-Larsen, Kresten, 2023, In: Journal of Physical Chemistry B. 127, 28, p. 6277-6286 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment
Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology
de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comment on “Intrinsic protein disorder uncouples affinity from binding specificity”
Teilum, Kaare, Olsen, Johan Gotthardt & Kragelund, Birthe Brandt, 2023, In: Protein Science. 32, 4, 2 p., e4602.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Community dynamics and co-occurrence relationships of pelagic ciliates and their potential prey at a coastal and an offshore station in the ultra-oligotrophic Eastern Mediterranean Sea
Romano, F., Pitta, P. & John, U., 2023, In: Frontiers in Genetics. 14, 15 p., 1219085.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparable early-stage decomposition but contrasting underlying drivers between surface and cave habitats along an elevational gradient
Bodawatta, Kasun Harshana, Ravn, N., Oromí, P., Esquivel, J. L. M., Michelsen, Anders, Poulsen, Michael, Jønsson, Knud Andreas & Reboleira, Ana Sofia, 2023, In: Ecological Indicators. 154, 12 p., 110607.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
Salvà-Serra, F., Pérez-Pantoja, D., Donoso, R. A., Jaén-Luchoro, D., Fernandez Juarez, Victor, Engström-Jakobsson, H., Moore, E. R. B., Lalucat, J. & Bennasar-Figueras, A., 2023, In: Frontiers in Microbiology. 14, 19 p., 1159176.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics reveals the hybrid origin of a macaque group
Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, , 2023, In: Science Advances. 9, 22, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative molecular and morphological species delineation of Halammohydra Remane, 1927 (Hydrozoa): with the description of four new species
Tödter, L., Worsaae, Katrine & Schmidt-Rhaesa, A., 2023, In: Organisms Diversity and Evolution. 23, p. 455-476 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations
Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Composition and distribution of diazotrophs in the Baltic Sea
Salamon Slater, E. R., Turk-kubo, K. A., Hallstrøm, S., Kesy, K., Laas, P., Magasin, J., Zehr, J. P., Labrenz, M. & Riemann, Lasse, 2023, In: Estuarine, Coastal and Shelf Science. 294, 12 p., 108527.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Compositional breakpoints of freshwater plant communities across continents
García-Girón, J., Heino, J., Båstrup-Spohr, Lars, Clayton, J., Winton, M. D., Feldmann, T., Fernández-Aláez, C., Ecke, F., Grillas, P., Hoyer, M. V., Kolada, A., Kosten, S., Lukács, B. A., Mjelde, M., Mormul, R. P., Rhazi, L., Rhazi, M., Sass, L., Xu, J. & Alahuhta, J., 2023, In: Limnetica. 42, 2, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Compromised junctional integrity phenocopies age-dependent renal dysfunction in Drosophila Snakeskin mutants
Dornan, A. J., Halberg, Kenneth Veland, Beuter, L. K., Davies, S. A. & Dow, J. A. T., 2023, In: Journal of Cell Science. 136, 19, 15 p., jcs261118.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations
Thomasen, Emil, Cuneo, M. J., Mittag, T. & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 23 p., e84147.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conformational entropy in molecular recognition of intrinsically disordered proteins
Skriver, Karen, Theisen, Frederik Friis & Kragelund, Birthe Brandt, 2023, In: Current Opinion in Structural Biology. 83, 8 p., 102697.Research output: Contribution to journal › Review › Research › peer-review
- Published
Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea
Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2002, 11 p., 20230988.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Long-term survival of dinoflagellate cysts in anoxic marine sediments.
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Danmarks biodiversitets fremtid: de væsentligste udfordringer og højest prioriterede virkemidler
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Complexity of avian evolution revealed by family-level genomes
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A region of suppressed recombination misleads neoavian phylogenomics
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