Department of Biology

 

 
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  1. 2023
  2. Published

    Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis

    von Eyben, F. E., Kristiansen, Karsten, Kapp, D. S., Hu, R., Preda, O. & Nogales, F. F., 2023, In: International Journal of Molecular Sciences. 24, 4, 28 p., 4148.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Epithelium dynamics differ in time and space when exposed to the permeation enhancers penetramax and EGTA. A head-to-head mechanistic comparison

    Panou, D. A., Pedersen, Stine Helene Falsig, Kristensen, Mie & Nielsen, Hanne Mørck, 2023, In: Frontiers in Drug Delivery. 3, 16 p., 1221628.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Erstnachweis von Jaapiella chelidonii in Deutschland und von Mayetiola hellwigi in Schleswig-Holstein (Diptera: Cecidomyiidae)

    Bruun, Hans Henrik, 2023, In: Virgo - Mitteilungsblatt des Entomologischen Vereins Mecklenburg. 26, p. 91-92 2 p.

    Research output: Contribution to journal › Journal article › Research

  5. Published

    Estimating admixture pedigrees of recent hybrids without a contiguous reference genome

    Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Estuarine Seagrasses

    Gruber, R. K., Gurbisz, C., Borum, Jens & Kemp, W. M., 2023, Estuarine Ecology. Crump, B. C., Testa, J. M. & Dunton, K. H. (eds.). 3 ed. John/Wiley & Sons, Inc. John/Wiley & Sons Ltd., 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  7. Published

    Evaluation of population structure inferred by principal component analysis or the admixture model

    Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Evaluation of the Impact of BaP Exposure on the Gut Microbiota and Allergic Responses in an OVA-Sensitized Mouse Model

    Du, B., Xiao, X., Wang, H., Li, W., Xia, Z., Yang, P., Huang, S. K., Yuan, R., Liu, J., Han, M., Zou, Y., Zhu, J., He, D., Lyu, J., Jin, X., Xu, X., Wang, J., Yang, H., Xiao, L., Liu, X. & 1 others, Kristiansen, Karsten, 2023, In: Environmental Health Perspectives. 131, 6, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Every refuge has its price: Ostreobium as a model for understanding how algae can live in rock and stay in business

    Tandon, K., Pasella, M. M., Iha, C., Ricci, F., Hu, J., O'Kelly, C. J., Medina, M., Kühl, Michael & Verbruggen, H., 2023, In: Seminars in Cell and Developmental Biology. 134, p. 27-36 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau

    Chen, N., Zhang, Z., Hou, J., Chen, J., Gao, X., Tang, L., Wangdue, S., Zhang, X., Sinding, Mikkel Holger Strander, Liu, X., Han, J., Lü, H., Lei, C., Marshall, F. & Liu, X., 2023, In: Science Advances. 9, 50, 13 p., eadi6857.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Evidence that the domesticated fungus Leucoagaricus gongylophorus recycles its cytoplasmic contents as nutritional rewards to feed its leafcutter ant farmers

    A. Leal-Dutra, Caio, Yuen, L. M., Guedes, B. A. M., Contreras Serrano, Marta, Marques, P. E. & Shik, Jonathan Z., 2023, In: IMA Fungus. 14, 1, 13 p., 19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Evolution of Bilateria from a Meiofauna Perspective—Miniaturization in the Focus

    Worsaae, Katrine, Vinther, J. & Sørensen, Martin Vinther, 2023, New Horizons in Meiobenthos Research: Profiles, Patterns and Potentials. 1 ed. Springer, Cham, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  13. Published

    Evolution of the germline mutation rate across vertebrates

    Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Evolutionary fine-tuning of residual helix structure in disordered proteins manifests in complex structure and lifetime

    Elkjær, Steffie Martina H, Due, Amanda Duncan, Christensen, L. F., Theisen, Frederik Friis, Staby, L., Kragelund, Birthe Brandt & Skriver, Karen, 2023, In: Communications Biology . 6, 11 p., 63.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Examination of the Regulation and Function of TopBP1 during Mitotic DNA Repair

    Bagge, J., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 124 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Expanding known viral diversity in the healthy infant gut

    Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Expanding the Echinoderes coulli group (Kinorhyncha Cyclorhagida) with a new species from the Chuuk Islands, Micronesia

    Herranz, Maria, Moreleon, A. D., Rho, H. S. & Sørensen, Martin Vinther, 2023, In: Zoologischer Anzeiger. 302, p. 67-74 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Expanding the enzymatic toolbox for O-glycan analysis: Engineering endo-α-N-acetylgalactosaminidase for processing of complex O-glycans

    Hansen, A. L., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. Published

    Explainable Image Quality Assessments in Teledermatological Photography

    Jalaboi, R., Winther, Ole & Galimzianova, A., 2023, In: Telemedicine and e-Health. 29, 9, p. 1342-1348 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Exploring antidepressant treatment response using biological and clinical measurements

    Nøhr, A. K., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Exploring regulation of untranslated RNAs in Escherichia coli: From the well-defined tRNAs to the evolving field of sRNAs

    Heidemann, Ditte Fogh, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    Expression of genes and enzymes involved in ovarian steroidogenesis in relation to human follicular development

    Zheng, M., tcg964, tcg964, Rasmussen, F. R., Cadenas, J., Christensen, Søren Tvorup & Mamsen, L. S., 2023, In: Frontiers in Endocrinology. 14, 17 p., 1268248.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Extracting DNA from soil or directly from isolated nematodes indicate dissimilar community structure for Europe-wide forest soils

    Donhauser, J., Briones, M. J. I., Mikola, J., Jones, D. L., Eder, R., Filser, J., Frossard, A., Krogh, P. H., Sousa, J. P., Cortet, J., Desie, E., Domene, X., Djuric, S., Hackenberger, D., Jimenez, J. J., Iamandei, M., Rissmann, C., Schmidt, O., Shanskiy, M., Silfver, T. & 4 others, Vancampenhout, K., Vasutova, M., Velizarova, E. & Frey, B., 2023, In: Soil Biology and Biochemistry. 185, 16 p., 109154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    FISH-KILLING MARINE ALGAL BLOOMS: Causative Organisms, Ichthyotoxic Mechanisms, Impacts and Mitigation

    Hallegraeff, G., Anderson, D. M., Davidson, K., Gianella , F., Hansen, Per Juel, Iwataki, M., Larsen, T. O., Hegaret, H., Mardones, J. I., MacKenzie, L. & Rensel, J. E., 2023, Unesco. 96 p.

    Research output: Book/Report › Report › Research

  25. Published

    FK506-Binding Protein 2 Participates in Proinsulin Folding

    Hoefner, C., Bryde, T. H., Pihl, C., Tiedemann, S. N., Bresson, S. E., Hotiana, H. A., Khilji, M. S., Santos, T. D., Puglia, M., Pisano, P., Majewska, M., Durzynska, J., Klindt, K., Klusek, J., Perone, M. J., Bucki, R., Hägglund, P. M., Gourdon, P. E., Gotfryd, K., Urbaniak, E. & 5 others, Borowiak, M., Wierer, M., MacDonald, P. E., Mandrup-Poulsen, Thomas & Marzec, Michal Tomasz, 2023, In: Biomolecules. 13, 1, 20 p., 152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Fast and accurate out-of-core PCA framework for large scale biobank data

    Li, Z., Meisner, Jonas & Albrechtsen, Anders, 2023, In: Genome Research. 33, 9, p. 1599-1608 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Fine-scale mapping of physicochemical and microbial landscapes of the coral skeleton

    Ricci, F., Tandon, K., Moßhammer, Maria, Cho, E. H. J., Blackall, L. L., Kühl, Michael & Verbruggen, H., 2023, In: Environmental Microbiology. 25, 8, p. 1505-1521 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Fission yeast Swi2 designates cell-type specific donor and stimulates Rad51-driven strand exchange for mating-type switching

    Maki, T., Thon, Genevieve & Iwasaki, H., 2023, In: Nucleic acids symposium series. 51, 8, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Flock social behaviour and vocal communication in Eupsittula conures

    Thomsen, Heidi Maria, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    Flood-tolerant rice for enhanced production and livelihood of smallholder farmers of Africa

    Mwakyusa, L., Dixit, S., Herzog, Max, Heredia, M. C., Madege, R. R. & Kilasi, N. L., 2023, In: Frontiers in Sustainable Food Systems. 7, 13 p., 1244460.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    Floods stress in lowland rice production: experiences of rice farmers in Kilombero and Lower-Rufiji floodplains, Tanzania

    Sulle Michael, P., Mwakyusa, L., G. Sanga, H., J. Shitindi, M., Kwaslema, D. R., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Sustainable Food Systems. 7, 18 p., 1206754.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Folding of heterologous proteins in bacterial cell factories: Cellular mechanisms and engineering strategies

    Rong, Y., Jensen, S. I., Lindorff-Larsen, Kresten & Nielsen, A. T., 2023, In: Biotechnology Advances. 63, 21 p., 108079.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Forest buffer-strips mitigate the negative impact of oil palm plantations on stream communities

    Rojas-castillo, O. A., Kepfer Rojas, Sebastian, Vargas, N. & Jacobsen, Dean, 2023, In: Science of the Total Environment. 873, 12 p., 162259.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Four additional natural 7-deazaguanine derivatives in phages and how to make them

    Cui, L., Balamkundu, S., Liu, C. F., Ye, H., Hourihan, J., Rausch, A., Hauß, C., Nilsson, E., Hoetzinger, M., Holmfeldt, K., Zhang, W., Martinez-Alvarez, L., Peng, X., Tremblay, D., Moinau, S., Solonenko, N., Sullivan, M. B., Lee, Y. J., Mulholland, A., Weigele, P. R. & 3 others, de Crécy-Lagard, V., Dedon, P. C. & Hutinet, G., 2023, In: Nucleic Acids Research. 51, 17, p. 9214-9226 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Full activation of thermogenesis in brown adipocytes requires Basigin action

    Rupar, K., Isidor, Marie Sophie, Argemi Muntadas, Lidia, Agueda Oyarzabal, Marina, Plucinska, Kaja, Brown, E. L., Mattanovich, M., Bossi, Simone, Tozzi, M., Tandio, David, Petersen, P. S. S., Henriksen, T. I., Trošt, K., Hansen, Jacob B., Gerhart-Hines, Zach, Nielsen, S., Moritz, Thomas & Emanuelli, Brice, 2023, In: F E B S Journal. 290, 10, p. 2673-2691

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Functions of m6A-YTH modules in plants: Lessons from high-throughput sequencing analyses

    Porcelli, C., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 178 p.

    Research output: Book/Report › Ph.D. thesis › Research

  37. Published

    Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

    Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    GDF15 increases insulin action in the liver and adipose tissue via a β-adrenergic receptor-mediated mechanism

    Sjøberg, K. A., Sigvardsen, Casper Møller, Alvarado-Diaz, A., Andersen, Nicoline Resen, Larance, M., Seeley, R. J., Schjerling, Peter, Knudsen, Jakob Grunnet, Katzilieris Petras, Georgios, Clemmensen, Christoffer, Jørgensen, S. B., De Bock, K. & Richter, Erik A., 2023, In: Cell Metabolism. 35, 8, p. 1327-1340.e5 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Genes with epigenetic alterations in human pancreatic islets impact mitochondrial function, insulin secretion, and type 2 diabetes

    Rönn, T., Ofori, J. K., Perfilyev, A., Hamilton, Alexander, Pircs, K., Eichelmann, F., Garcia-Calzon, S., Karagiannopoulos, A., Stenlund, H., Wendt, A., Volkov, P., Schulze, M. B., Mulder, H., Eliasson, L., Ruhrmann, S., Bacos, K. & Ling, C., 2023, In: Nature Communications. 14, 1, 21 p., 8040.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Genetic Loss of Sucrase-Isomaltase Function: Mechanisms, Implications, and Future Perspectives

    Senftleber, N. K., Ramne, Stina, Moltke, Ida, Jørgensen, M. E., Albrechtsen, Anders, Hansen, Torben & Lepola, Mette Andersen, 2023, In: Application of Clinical Genetics. 16, p. 31-39 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    Genetics as a novel tool in mining impact assessment and biomonitoring of critically endangered western chimpanzees in the Nimba Mountains, Guinea

    Koops, K., Humle, T., Frandsen, P., Fitzgerald, M., D'Auvergne, L., Jackson, H. A., Børsting, Claus, Siegismund, Hans Redlef, Soumah, A. G. & Hvilsom, C., 2023, In: Conservation Science and Practice. 5, 4, 17 p., e12898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genome mining for macrolactam-encoding gene clusters allowed for the network-guided isolation of β-amino acid-containing cyclic derivatives and heterologous production of ciromicin A

    Seibel, E., Um, S., Dayras, M., Bodawatta, Kasun Harshana, de Kruijff, M., Jønsson, Knud Andreas, Poulsen, Michael, Kim, K. H. & Beemelmanns, C., 2023, In: Communications Chemistry. 6, 15 p., 257.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Genome sequence and genomic analysis of liver abscess caused by hypervirulent Klebsiella pneumoniae

    Pei, N., Liu, X., Jian, Z., Yan, Q., Liu, Q., Kristiansen, Karsten, Li, J. & Liu, W., 2023, In: 3 Biotech. 13, 3, 7 p., 76.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Genome-wide characterization of extrachromosomal circular DNA in gastric cancer and its potential role in carcinogenesis and cancer progression

    Jiang, X., Pan, Xiaoguang, Li, W., Han, Peng, Yu, J., Li, J., Zhang, H., Lv, W., Zhang, Y., He, Y. & Xiang, X., 2023, In: Cellular and Molecular Life Sciences. 80, 7, 18 p., 191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)

    Hansen, C. C. R., Láruson, Á. J., Rasmussen, Jacob Agerbo, Ballesteros, J. A. C., Sinding, Mikkel Holger Strander, Hallgrimsson, G. T., von Schmalensee, M., Stefansson, R. A., Skarphédinsson, K. H., Labansen, A. L., Leivits, M., Sonne, C., Dietz, R., Skelmose, K., Boertmann, D., Eulaers, I., Martin, M. D., Helgason, A. S., Gilbert, M Thomas P & Pálsson, S., 2023, In: Molecular Ecology. 32, 8, p. 1925-1942 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Genomics of adaptive evolution in the woolly mammoth

    Díez-del-Molino, D., Dehasque, M., Chacón-Duque, J. C., Chrzanová Pecnerová, Patrícia, Tikhonov, A., Protopopov, A., Plotnikov, V., Kanellidou, F., Nikolskiy, P., Mortensen, P., Danilov, G. K., Vartanyan, S., Gilbert, M Thomas P, Lister, A. M., Heintzman, P. D., van der Valk, T. & Dalén, L., 2023, In: Current Biology. 33, 9, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Geochemical landscapes as drivers of wildlife reproductive success: Insights from a high-Arctic ecosystem

    van Beest, F. M., Schmidt, N. M., Stewart, L., Hansen, L. H., Michelsen, Anders, Mosbacher, J. B., Gilbert, H., Le Roux, G. & Hansson, S. V., 2023, In: Science of the Total Environment. 903, 12 p., 166567.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Glacial meltwater and seasonality influence community composition of diazotrophs in Arctic coastal and open waters

    Winberg von Friesen, Lisa, Paulsen, M. L., Müller, O., Gründger, F. & Riemann, Lasse, 2023, In: F E M S Microbiology Ecology. 99, 8, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Global analysis of multi-mutants to improve protein function

    Johansson, Kristoffer Enøe, Lindorff-Larsen, Kresten & Winther, Jakob R., 2023, In: Journal of Molecular Biology. 435, 8, 15 p., 168034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Global beta-diversity of angiosperm trees is shaped by Quaternary climate change

    Xu, W. B., Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Enquist, B. J., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A. & 39 others, Dias, A. S., Giroldo, A. B., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Komac, B., Kraft, N. J. B., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Ma, K. P., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Onstein, R. E., Peñuelas, J., Pillar, V. D., Pisek, J., Pound, M. J., Robroek, B. J. M., Schamp, B., Slot, M., Sun, M., Sosinski, Ê. E., Soudzilovskaia, N. A., Thiffault, N., van Bodegom, P. M., van der Plas, F., Zheng, J., Svenning, J. C. & Ordonez, A., 2023, In: Science Advances. 9, 14, 19 p., eadd8553.

    Research output: Contribution to journal › Journal article › Research › peer-review

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