Department of Biology

 

 
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  1. 2023
  2. Published

    Marchantiana pyramus, M. ramulicola and Austroplaca thisbe (Teloschistaceae, lichenized Ascomycota) - three new twig lichens from southern Patagonia

    Søchting, Ulrik, Sancho, L. G. & Arup, U., 2023, In: Lichenologist. 55, 5, p. 377-387 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The quantitative importance of key root traits for radial water loss under low water potential

    Song, Zhiwei, Zonta, F., Peralta Ogorek, Lucas León, Bastegaard, V. K., Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Plant and Soil. 482, 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The ABA/LANCL1/2 Hormone/Receptor System Controls Adipocyte Browning and Energy Expenditure

    Spinelli, S., Cossu, V., Passalacqua, M., Hansen, Jacob B., Guida, L., Magnone, M., Sambuceti, G., Marini, C., Sturla, L. & Zocchi, E., 2023, In: International Journal of Molecular Sciences. 24, 4, 27 p., 3489.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Hydrostatic pressure induces transformations in the organic matter and microbial community composition of marine snow particles

    Stief, P., Schauberger, C., Becker, K. W., Elvert, M., Balmonte, J. P., Franco-Cisterna, B., Middelboe, Mathias & Glud, R. N., 2023, In: Communications Earth and Environment. 4, 1, 14 p., 377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture

    Stiller, Josefin, Wilson, N. G. & Rouse, G., 2023, In: BMC Biology. 21, 17 p., 129.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Characterization of industrially-produced Lacticaseibacillus rhamnosus GG and Lactobacillus acidophilus LA-5: Analysis of genomic integrity, transcriptome and phenotypes

    Strickertsson, Marianne Stage, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 206 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Floods stress in lowland rice production: experiences of rice farmers in Kilombero and Lower-Rufiji floodplains, Tanzania

    Sulle Michael, P., Mwakyusa, L., G. Sanga, H., J. Shitindi, M., Kwaslema, D. R., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Sustainable Food Systems. 7, 18 p., 1206754.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Uncovering spatiotemporal pattern of floods with Sentinel-1 synthetic aperture radar in major rice-growing river basins of Tanzania

    Sulle Michael, P., G. Sanga, H., J. Shitindi, M., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Earth Science. 11, 15 p., 1183834.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Age-dependent changes in the gut microbiota and serum metabolome correlate with renal function and human aging

    Sun, L., Li, Z., Hu, C., Ding, J., Zhou, Q., Pang, G., Wu, Z., Yang, R., Li, S., Li, J., Cai, J., Sun, Y., Li, R., Zhen, H., Sun, S., Zhang, J., Fang, M., Chen, Z., Lv, Y., Cao, Q. & 36 others, Sun, Y., Gong, R., Huang, Z., Duan, Y., Liu, H., Dong, J., Li, J., Ruan, J., Lu, H., He, B., Li, N., Li, T., Xue, W., Li, Y., Shen, J., Yang, F., Zhao, C., Liang, Q., Zhang, M., Chen, C., Gong, H., Hou, Y., Wang, J., Zhang, Y., Yang, H., Zhu, S., Xiao, L., Jin, Z., Guo, H., Zhao, P., Brix, S., Xu, X., Jia, H., Kristiansen, Karsten, Yang, Z. & Nie, C., 2023, In: Aging Cell. 22, 12, 20 p., e14028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    How protons pave the way to aggressive cancers

    Swietach, P., Boedtkjer, E. & Pedersen, Stine Helene Falsig, 2023, In: Nature Reviews Cancer. 23, p. 825-841 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  12. Published

    Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

    Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    An overview of plasmid transfer in the plant microbiome

    Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Methane and carbon dioxide fluxes at high spatiotemporal resolution from a small temperate lake

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, Kenneth Thorø, Polauke, E., Kjær, Johan Emil, Reitzel, K. & Kragh, T., 2023, In: Science of the Total Environment. 878, 11 p., 162895.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, Kenneth Thorø & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contribution › Net publication - Internet publication › Communication

  16. Published

    Synergistic effects of agonists and two-pore-domain potassium channels on secretory responses of human pancreatic duct cells Capan-1

    Sørensen, Christiane Elisabeth, Trauzold, A., Christensen, Nynne, Tawfik, D., Szczepanowski, M. & Novak, Ivana, 2023, In: Pflügers Archiv - European Journal of Physiology. 475, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Living on the edge – first survey of loriciferans along the Atacama Trench

    Sørensen, Martin Vinther, Herranz, Maria, Grzelak, K., Shimabukuro, M., Kristensen, Reinhardt Møbjerg & Zeppilli, D., 2023, In: European Journal of Taxonomy. 879, p. 162-187

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Every refuge has its price: Ostreobium as a model for understanding how algae can live in rock and stay in business

    Tandon, K., Pasella, M. M., Iha, C., Ricci, F., Hu, J., O'Kelly, C. J., Medina, M., Kühl, Michael & Verbruggen, H., 2023, In: Seminars in Cell and Developmental Biology. 134, p. 27-36 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  19. Published

    High-latitude vegetation changes will determine future plant volatile impacts on atmospheric organic aerosols

    Tang, Jing, Zhou, P., Miller, P. A., Schurgers, Guy, Gustafson, A., Makkonen, R., Fu, Y. H. & Rinnan, Riikka, 2023, In: npj Climate and Atmospheric Science. 6, 1, 13 p., 147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Comment on “Intrinsic protein disorder uncouples affinity from binding specificity”

    Teilum, Kaare, Olsen, Johan Gotthardt & Kragelund, Birthe Brandt, 2023, In: Protein Science. 32, 4, 2 p., e4602.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  21. Published

    Possible signs of recovery of the nearly extirpated Spitsbergen bowhead whales: calves observed in east Greenland

    Tervo, O. M., Louis, Marie Georgette Yolande J, Sinding, Mikkel Holger Strander, Heide-Jørgensen, M. P. & Hansen, R. G., 2023, In: Polar Research. 42, 4 p., 8809.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

    Tesei, Giulio & Lindorff-Larsen, Kresten, 2023, In: Open Research Europe. 2, 94, 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    DeepPeptide predicts cleaved peptides in proteins using conditional random fields

    Teufel, Felix Georg, Refsgaard, J. C., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Bioinformatics (Oxford, England). 39, 10, 6 p., btad616.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Deorphanizing Peptides Using Structure Prediction

    Teufel, Felix Georg, Refsgaard, J. C., Kasimova, M. A., Deibler, K., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Journal of Chemical Information and Modeling. 63, 9, 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    GraphPart: homology partitioning for biological sequence analysis

    Teufel, Felix Georg, Gíslason, M. H., Almagro Armenteros, J. J., Johansen, A. R., Winther, Ole & Nielsen, H., 2023, In: NAR Genomics and Bioinformatics. 5, 4, 9 p., lqad088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Drying of Springs in the Himalayan Region of Nepal: Perspectives of Local Government Leaders on Causes, Consequences, and Conservation Efforts

    Thapa, B., Bhattarai, C., Dahal, N., Tiwari, S. & Jacobsen, Dean, 2023, In: Mountain Research and Development. 43, 4, p. R9-R15 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    How genomics can help biodiversity conservation

    The European Reference Genome Atlas Consortium, T. E. R. G. A. C., 2023, In: Trends in Genetics. 39, 7, 15 p.

    Research output: Contribution to journal › Review › Research › peer-review

  28. Published

    Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations

    Thomasen, Emil, Cuneo, M. J., Mittag, T. & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 23 p., e84147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Flock social behaviour and vocal communication in Eupsittula conures

    Thomsen, Heidi Maria, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria

    Thorsen, Jonathan Jan Ilve, Li, Xuan Ji, Peng, Shuang, Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, Christina Egeø, Leal Rodriguez, C., Widdowson, Michael Lawrence, Neumann, A. U., Trivedi, Urvish, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Nature Communications. 14, 12 p., 6668.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A novel splice-affecting HNF1A variant with large population impact on diabetes in Greenland

    Thuesen, A. C. B., Stæger, F. F., Kaci, A., Solheim, M. H., Aukrust, I., Jørsboe, E., Santander, C. G., Andersen, M. K., Li, Z., Gilly, A., Stinson, S. E., Gjesing, A. P., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Grarup, N., Jørgensen, M. E., Zeggini, E., Bjørkhaug, L., Njølstad, P. R. & 3 others, Albrechtsen, Anders, Moltke, Ida & Hansen, Torben, 2023, In: The Lancet Regional Health - Europe. 24, 12 p., 100529.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Interpreting the molecular mechanisms of disease variants in human transmembrane proteins

    Tiemann, Johanna Katarina Sofie, Zschach, Henrike, Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Biophysical Journal. 122, 11, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The cellular 3D printer of a marine bristle worm—chaetogenesis in Platynereis dumerilii (Audouin & Milne Edwards, 1834) (Annelida)

    Tilic, E., Herkenrath, T., Kirfel, G. & Bartolomaeus, T., 2023, In: Cell and Tissue Research. 391, p. 305-322

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Use of Probiotics to Control Biofilm Formation in Food Industries

    Tomé, A. R., Carvalho, F. M., Teixeira-Santos, R., Burmølle, Mette, Mergulhão, F. J. M. & Gomes, L. C., 2023, In: Antibiotics. 12, 4, 17 p., 754.

    Research output: Contribution to journal › Review › Research › peer-review

  35. Published

    Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?

    Tong, Shuai, Ashikari, M., Nagai, K. & Pedersen, Ole, 2023, In: Rice. 16, 1, 20 p., 13.

    Research output: Contribution to journal › Review › Research › peer-review

  36. Published

    Responses of key root traits in the genus Oryza to soil flooding mimicked by stagnant, deoxygenated nutrient solution

    Tong, Shuai, Kjær, Johan Emil, Peralta Ogorek, Lucas León, Pellegrini, Elisa, Song, Zhiwei, Pedersen, Ole & Herzog, Max, 2023, In: Journal of Experimental Botany. 74, 6, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    The resilience journey of rice: Root traits, genome editing and silicon-mediated strategies for enhanced abiotic stress tolerance in rice

    Tong, Shuai, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Editorial: Drivers of host-microbiome interactions in the rhizosphere

    Topalovic, Olivera, Koorem, K. & Wilschut, R. A., 2023, In: Frontiers in Plant Science. 14, 3 p., 1294388.

    Research output: Contribution to journal › Editorial › Research › peer-review

  40. Published

    Nematodes as suppressors and facilitators of plant performance

    Topalovic, Olivera & Geisen, S., 2023, In: New Phytologist. 238, 6, p. 2305-2312

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    The histone demethylase KDM5C functions as a tumor suppressor in AML by repression of bivalently marked immature genes

    Trempenau, M. L., Schuster, Mikkel Bruhn, Pundhir, Sachin, Araújo Pereira, Mafalda, Kalvisa, A., Tapia, Marta Cecylia, Su, Jinyu, Ge, Y., de Boer, Bauke, Balhuizen, Alexander, Bagger, F. O., Shliaha, P., Sroczynska, P., Walfridsson, J., Grønbæk, Kirsten, Theilgaard-Mønch, Kim, Jensen, O. N., Helin, K. & Porse, Bo Torben, 2023, In: Leukemia. 37, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Parental exposure to heat waves improves offspring reproductive investment in Tetranychus urticae (Acari: Tetranychidae), but not in its predator, Phytoseiulus persimilis (Acari: Phytoseiidae)

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B., Scalmani, I. & Walzer, A., 2023, In: Ecology and Evolution. 13, 11, 20 p., e10748.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Reproducing during Heat Waves: Influence of Juvenile and Adult Environment on Fecundity of a Pest Mite and Its Predator

    Tscholl, T., Nachman, Gøsta Støger, Spangl, B., Serve, H. C. & Walzer, A., 2023, In: Biology. 12, 4, 22 p., 554.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Comparative molecular and morphological species delineation of Halammohydra Remane, 1927 (Hydrozoa): with the description of four new species

    Tödter, L., Worsaae, Katrine & Schmidt-Rhaesa, A., 2023, In: Organisms Diversity and Evolution. 23, p. 455-476 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Cold-stimulated brown adipose tissue activation is related to changes in serum metabolites relevant to NAD+ metabolism in humans

    U-Din, M., de Mello, V. D., Tuomainen, M., Raiko, J., Niemi, T., Fromme, T., Klåvus, A., Gautier, N., Haimilahti, K., Lehtonen, M., Kristiansen, Karsten, Newman, J. W., Pietiläinen, K. H., Pihlajamäki, J., Amri, E. Z., Klingenspor, M., Nuutila, P., Pirinen, E., Hanhineva, K. & Virtanen, K. A., 26 Sep 2023, In: Cell Reports. 42, 9, 23 p., 113131.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Emerging roles of the CIP2A–TopBP1 complex in genome integrity

    Ummethum, Henning Ole, Li, Jiayi, Lisby, Michael & Østergaard, Vibe Hallundbæk, 2023, In: NAR Cancer. 5, 4, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Accurate protein stability predictions from homology models

    Valanciute, A., Nygaard, L., Zschach, Henrike, Maglegaard Jepsen, M., Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 66-73 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Evaluation of population structure inferred by principal component analysis or the admixture model

    Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Plant traits and associated data from a warming experiment, a seabird colony, and along elevation in Svalbard

    Vandvik, V., Halbritter, A. H., Althuizen, I. H. J., Christiansen, C. T., Henn, J. J., Jónsdóttir, I. S., Klanderud, K., Macias-Fauria, M., Malhi, Y., Maitner, B. S., Michaletz, S., Roos, R. E., Telford, R. J., Bass, P., Björnsdóttir, K., Bustamante, L. L. V., Chmurzynski, A., Chen, S., Haugum, S. V., Kemppinen, J. & 15 others, Lepley, K., Li, Y., Linabury, M., Matos, I. S., Neto-Bradley, B. M., Ng, M., Niittynen, P., Östman, S., Pánková, K., Roth, N., Castorena, M., Spiegel, M., Thomson, E., Vågenes, A. S. & Enquist, B. J., 2023, In: Scientific Data. 10, 1, 21 p., 578.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Structural characterization of human tryptophan hydroxylase 2 reveals that L-Phe is superior to L-Trp as the regulatory domain ligand

    Vedel, I. M., Prestel, Andreas, Zhang, Z., Skawinska, N. T., Stark, H., Harris, Pernille, Kragelund, Birthe Brandt & Peters, G. H. J., 2023, In: Structure (London, England : 1993). 31, 6, p. 689-699e6 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Decoupled phylogenetic and functional diversity in European grasslands

    Večeřa, M., Axmanová, I., Chytrý, M., Divíšek, J., Ndiribe, C., Mones, G. V., Čeplová, N., Aćić, S., Bahn, M., Bergamini, A., Boenisch, G., Biurrun, I., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Cornelissen, J. H. C., Dengler, J., Jansen, F., Jansen, S. & 17 others, Kattge, J., Kozub, Ł., Kuzemko, A., Minden, V., Mitchell, R. M., Moeslund, J. E., Mori, A. S., Niinemets, Ü., Ruprecht, E., Rusina, S., Šilc, U., Soudzilovskaia, N. A., van Bodegom, P. M., Vassilev, K., Weiher, E., Wright, I. J. & Lososová, Z., 2023, In: Preslia. 95, 4, p. 413-445 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes

    Vold, Victoria Amstrup, Glanville, S., Klærke, Dan Arne & Pedersen, Per Amstrup, 2023, In: PLoS ONE. 18, 2, 16 p., e0281868.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants

    von Bülow, Sören, Sikora, M., Blanc, F. E. C., Covino, R. & Hummer, G., 2023, In: PLOS Computational Biology. 19, 1, 15 p., e1010822.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Multi-level combinatoriality in magpie non-song vocalizations

    Walsh, S. L., Engesser, Sabrina, Townsend, S. W. & Ridley, A. R., 2023, In: Journal of the Royal Society Interface. 20, 199, 11 p., 20220679.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    RNA trafficking and subcellular localization—a review of mechanisms, experimental and predictive methodologies

    Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2023, In: Briefings in Bioinformatics. 24, 5, 14 p., bbad249.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Cooperative antibiotic resistance facilitates horizontal gene transfer

    Wang, Q., Wei, S., Silva, A. F. & Madsen, Jonas Stenløkke, 2023, In: ISME Journal. 17, 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Enhanced foliar 15N enrichment with increasing nitrogen addition rates: Role of plant species and nitrogen compounds

    Wang, Y., Niu, G., Wang, R., Rousk, Kathrin, Li, A., Hasi, M., Wang, C., Xue, J., Yang, G., Lü, X., Jiang, Y., Han, X. & Huang, J., 2023, In: Global Change Biology. 29, 6, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Lactate and Lactylation: Clinical Applications of Routine Carbon Source and Novel Modification in Human Diseases

    Wang, Z., Hao, Dan, Zhao, S., Zhang, Z., Zeng, Z. & Wang, X., 2023, In: Molecular and Cellular Proteomics. 22, 10, 16 p., 100641.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland

    Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, Kirsten Seestern & Jeppesen, E., 2023, In: Frontiers in Ecology and Evolution. 11, 15 p., 1177638.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

    Weng, Z., Ruan, F., Chen, W., Chen, Z., Xie, Y., Luo, M., Xie, Z., Zhang, C., Wang, J., Sun, Y., Fang, Y., Guo, M., Tan, C., Chen, W., Tong, Y., Li, Y., Wang, H. & Tang, C., 2023, In: Genome Biology. 24, 1, 29 p., 61.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

    Wenger, Alice, Biran, Alva Ada, Alcaraz, N., Riveiro, Alba, Sell, Annika Charlotte, Krautz, Robert, Flury, Valentin, Reveron-Gomez, Nazaret, Solis-Mezarino, V., Völker-Albert, M., Imhof, A., Andersson, Robin, Brickman, Joshua Mark & Groth, Anja, 2023, In: Nature Genetics. 55, 9, p. 1567-1578 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Impact of Holocene environmental change on the evolutionary ecology of an Arctic top predator

    Westbury, Michael Vincent, Brown, S. C., Lorenzen, J., O'Neill, S., Scott, M. B., McCuaig, J., Cheung, C., Armstrong, E., Valdes, P. J., Castruita, J. A. S., Cabrera, Andrea A., Blom, Stine Keibel, Dietz, R., Sonne, C., Louis, Marie Georgette Yolande J, Galatius, A., Fordham, D. A., dos Santos Ribeiro, Sofia Isabel, Szpak, P. & Lorenzen, Eline, 2023, In: Science Advances. 9, 45, 12 p., eadf3326.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Unique horizontal gaze control in the box jellyfish, Tripedalia cystophora

    Wiisbye, S. H. & Garm, Anders Lydik, 2023, In: Vision Research. 203, 8 p., 108159.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Pelagic Nitrogen Fixation and Diazotrophs in the Eurasian Arctic Ocean: A Missing Piece of the Arctic Nitrogen Puzzle

    Winberg von Friesen, Lisa, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 192 p.

    Research output: Book/Report › Ph.D. thesis › Research

  65. Published

    Editorial: Long-read sequencing—Pitfalls, benefits and success stories

    Wohlers, I., Garg, S. & Hehir-Kwa, J. Y., 2023, In: Frontiers in Genetics. 13, 3 p., 1114542.

    Research output: Contribution to journal › Editorial › Research › peer-review

  66. Published

    Evolution of Bilateria from a Meiofauna Perspective—Miniaturization in the Focus

    Worsaae, Katrine, Vinther, J. & Sørensen, Martin Vinther, 2023, New Horizons in Meiobenthos Research: Profiles, Patterns and Potentials. 1 ed. Springer, Cham, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  67. Published

    Cooperative microbial interactions drive spatial segregation in porous environments

    Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Next Generation Sequencing Library Preparation Technologies and Applications

    Wu, Zongze, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  69. Published

    When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli

    Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Global dispersal and adaptive evolution of domestic cattle: a genomic perspective

    Xia, X., Qu, K., Wang, Y., Sinding, Mikkel Holger Strander, Wang, F., Hanif, Q., Ahmed, Z., Lenstra, J. A., Han, J., Lei, C. & Chen, N., 2023, In: Stress Biology. 3, 1, 13 p., 8.

    Research output: Contribution to journal › Review › Research › peer-review

  71. Published

    Identification and functional analysis of circulating extrachromosomal circular DNA in schizophrenia implicate its negative effect on the disorder

    Xiang, X., Pan, Xiaoguang, Lv, W., Chen, S., Li, J., Zhang, H., Liao, Y., Yu, J., Li, J., Dang, Y., You, Z., Wang, L., Chen, W., Han, Peng & Tang, J., 2023, In: Clinical and Translational Medicine. 13, 11, 7 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  72. Published

    ERK and USP5 govern PD-1 homeostasis via deubiquitination to modulate tumor immunotherapy

    Xiao, X., Shi, J., He, C., Bu, X., Sun, Y., Gao, M., Xiang, B., Xiong, W., Dai, P., Mao, Q., Xing, X., Yao, Y., Yu, H., Xu, G., Li, S., Ren, Y., Chen, B., Jiang, C., Meng, G., Lee, Y. R. & 4 others, Wei, W., Freeman, G. J., Xie, C. & Zhang, J., 2023, In: Nature Communications. 14, 1, 19 p., 2859.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Novel tRNA Gene Rearrangements in the Mitochondrial Genomes of Poneroid Ants and Phylogenetic Implication of Paraponerinae (Hymenoptera: Formicidae)

    Xiong, Z., He, Ding, Guang, X. & Li, Q., 2023, In: Life. 13, 10, 17 p., 2068.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    The Discovery of Anti-defense Genes in Archaea

    Xu, Shuanshuan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  75. Published

    Deepened snow in combination with summer warming increases growing season nitrous oxide emissions in dry tundra, but not in wet tundra

    Xu, W., Frendrup, L. L., Michelsen, Anders, Elberling, Bo & Ambus, Per Lennart, 2023, In: Soil Biology and Biochemistry. 180, 12 p., 109013.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Global beta-diversity of angiosperm trees is shaped by Quaternary climate change

    Xu, W. B., Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Enquist, B. J., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A. & 39 others, Dias, A. S., Giroldo, A. B., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Komac, B., Kraft, N. J. B., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Ma, K. P., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Onstein, R. E., Peñuelas, J., Pillar, V. D., Pisek, J., Pound, M. J., Robroek, B. J. M., Schamp, B., Slot, M., Sun, M., Sosinski, Ê. E., Soudzilovskaia, N. A., Thiffault, N., van Bodegom, P. M., van der Plas, F., Zheng, J., Svenning, J. C. & Ordonez, A., 2023, In: Science Advances. 9, 14, 19 p., eadd8553.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance

    Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.

    Research output: Book/Report › Ph.D. thesis › Research

  78. Published

    Surprising leopard restoration in fragmented ecosystems reveals connections as the secret to conservation success

    Yanwen, F., Guojing, Z., Wenqian, D., Yue, W., Jiawei, L., Mengyu, T., Yan, L., Haoran, L., Bing, X., Xiao, J., Enyu, F., Lulu, Z., Jian, C., Lei, Y., Chenghao, W., Yongfeng, C., Guoqiang, C., Yong, Z., Kezi, L., Haitao, Y. & 4 others, Xuemei, H., Jianping, G., Jun, Z. & Limin, F., 2023, In: Science of the Total Environment. 858, 8 p., 159790.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    The combined effect of pH and dissolved inorganic carbon concentrations on the physiology of plastidic ciliate Mesodinium rubrum and its cryptophyte prey

    Yde Eriksen, C. S., Desmaret Walli, M., Van de Waal, D. B., Helmsing, N. R., Dahl, E. O., Sørensen, Helle & Hansen, Per Juel, 2023, In: Harmful Algae. 129, 11 p., 102509.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Genetic architecture of spatial electrical biomarkers for cardiac arrhythmia and relationship with cardiovascular disease

    Young, W. J., Haessler, J., Benjamins, J-W., Repetto, L., Yao, J., Isaacs, A., Harper, A. R., Ramirez, J., Garnier, S., van Duijvenboden, S., Baldassari, A. R., Concas, M. P., Duong, T., Foco, L., Isaksen, J. L., Mei, H., Noordam, R., Nursyifa, C., Richmond, A., Santolalla, M. L. & 74 others, Sitlani, C. M., Soroush, N., Thériault, S., Trompet, S., Aeschbacher, S., Ahmadizar, F., Alonso, A., Brody, J. A., Campbell, A., Correa, A., Darbar, D., De Luca, A., Deleuze, J., Ellervik, Christina, Fuchsberger, C., Goel, A., Grace, C., Guo, X., Hansen, Torben, Heckbert, S. R., Jackson, R. D., Kors, J. A., Lima-Costa, M. F., Linneberg, Allan René, Macfarlane, P. W., Morrison, A. C., Navarro, P., Porteous, D. J., Pramstaller, P. P., Reiner, A. P., Risch, L., Schotten, U., Shen, X., Sinagra, G., Soliman, E. Z., Stoll, M., Tarazona-Santos, E., Tinker, A., Trajanoska, K., Villard, E., Warren, H. R., Whitsel, E. A., Wiggins, K. L., Arking, D. E., Avery, C. L., Conen, D., Girotto, G., Grarup, Niels, Hayward, C., Jukema, J. W., Mook-Kanamori, D. O., Olesen, Morten Steen Salling, Padmanabhan, S., Psaty, B. M., Pattaro, C., Ribeiro, A. L. P., Rotter, J. I., Stricker, B. H., van der Harst, P., van Duijn, C. M., Verweij, N., Wilson, J. G., Orini, M., Charron, P., Watkins, H., Kooperberg, C., Lin, H. J., Wilson, J. F., Kanters, Jørgen K., Sotoodehnia, N., Mifsud, B., Lambiase, P. D., Tereshchenko, L. G. & Munroe, P. B., 14 Mar 2023, In: Nature Communications. 14, 1, 16 p., 1411.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Human epidermal growth factor receptor 2 status in urothelial bladder carcinoma: Frequency, genomic patterns and clinical significance

    Yu, T., Tao, H., Lv, W., Liang, N., Cui, X., Sui, X., Pan, Y., Wu, S., Xiang, C., Li, Y., Zeng, Y., Li, Conghui, Wang, F., Han, Peng, Wang, W., Yu, G. & Lin, C., 2023, In: Clinical and Translational Discovery. 3, 5, 4 p., e245.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  82. E-pub ahead of print

    A brief history of metal recruitment in protozoan predation

    Yu, Y., Li, Y. P., Ren, K., Hao, X., Fru, E. C., Rønn, Regin, Rivera, W. L., Becker, K., Feng, R., Yang, J. & Rensing, C., 2023, (E-pub ahead of print) In: Trends in Microbiology.

    Research output: Contribution to journal › Review › Research › peer-review

  83. Published

    Warming, permafrost thaw and increased nitrogen availability as drivers for plant composition and growth across the Tibetan Plateau

    Yun, Hanbo, Zhu, Q., Tang, Jing, Zhang, W., Chen, D., Ciais, P., Wu, Q. & Elberling, Bo, 2023, In: Soil Biology and Biochemistry. 182, 9 p., 109041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Development and validation of a minimally invasive and image-guided tape stripping method to sample atopic skin in children

    Yélamos, O., Andersen, D., Pont, M., Iglesias, P., Potrony, M., Domínguez, M., Herrero, A., Alejo, B., Mateu, J., Røpke, Mads Almose, Danneskiold-Samsøe, Niels Banhos, Malvehy, J., Guy, R. H., Brix, S. & Puig, S., 2023, In: Clinical and Experimental Dermatology. 48, 2, p. 80-88 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Unraveling the genetic basis of neurological diseases and thalassemia: the clinical utility of high throughput sequencing

    ZHANG, W., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  86. Published

    Development and application of new bioinformatic tools for large-scale population genomic study

    ZHANG, YONG, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 103 p.

    Research output: Book/Report › Ph.D. thesis › Research

  87. Published

    Cultivation and sequencing of commensal bacteria of the human gut through culture-based and metagenomics analyses

    ZOU, Y., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  88. Published

    Quantification of gene copy numbers is valuable in marine microbial ecology: a comment to Meiler et al. (2022).

    Zehr, J. P. & Riemann, Lasse, 2023, In: Limnology and Oceanography. 68, 6, 7 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  89. Published

    Comparative genomics reveals the hybrid origin of a macaque group

    Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, Roos, C., Qi, X. G., Li, M., Liu, Z., Schierup, M. H., Cooper, D. N., Liu, J., Zheng, Y. T., KU, thw266 & Wu, D. D., 2023, In: Science Advances. 9, 22, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力

    Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    On the origin and evolution of RNA editing in metazoans

    Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma

    Zhang, R., Feng, Y., Ma, W., Guo, Y., Luo, M., Li, Y., Zang, Y., Dong, X., Lu, S., Guo, Q., Xu, Q., Chen, H., Li, Y., Liu, L., CHEN, Ao, Chen, G. & Xu, X., 2023, In: Fundamental Research. 3, 4, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment

    Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization

    Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, Yang, H., Wang, J., Seim, I. & Fan, G., 2023, In: Nature Communications. 14, 1, 15 p., 5630.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Metagenome-Genome wide association studies for analysis of complex diseases

    Zhang, T., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 39 p.

    Research output: Book/Report › Ph.D. thesis › Research

  96. Published

    Sea animal colonies enhance carbonyl sulfide emissions from coastal Antarctic tundra

    Zhang, W., Zhu, R., Jiao, Yi, Rhew, R. C., Sun, B., Rinnan, Riikka & Zhou, Z., 2023, In: Communications Earth and Environment. 4, 1, 11 p., 326.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

    Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Recent decrease of the impact of tropical temperature on the carbon cycle linked to increased precipitation

    Zhang, Wenmin, Schurgers, Guy, Peñuelas, J., Fensholt, Rasmus, Yang, H., Tang, Jing, Tong, Xiaowei, Ciais, P. & Brandt, Martin Stefan, 2023, In: Nature Communications. 14, 1, 9 p., 965.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report

    Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification

    Zhang, Z., Duan, C., Liu, Y., Li, A., Hu, X., Chen, J., Zhang, S., Li, X., Che, R., Li, S., Ekelund, Flemming & Cui, X., 2023, In: Bioresource Technology. 380, 10 p., 129014.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Next generation sequencing facilitates the mining of genomic information in a clinical pathogen (Clostridium difficile) and the viromes of wildlife bats and rodents

    Zhao, Hailong, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 127 p.

    Research output: Book/Report › Ph.D. thesis › Research

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