Karsten Kristiansen

Karsten Kristiansen

Professor

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    ORCID: 0000-0002-6024-0917

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    1. CLONING AND CHARACTERIZATION OF THE GENE ENCODING THE HIGHLY EXPRESSED RIBOSOMAL PROTEIN L3 OF THE CILIATED PROTOZOAN TETRAHYMENA THERMOPHILA . EVIDENCE FOR DIFFERENTIAL CODON USAGE IN HIGHLY EXPRESSED GENES

      Larsen, L. K., Andreasen, P. H., Dreisig, H., Palm, L., Nielsen, H., Engberg, J. & Kristiansen, Karsten, 1999, In: Cell Biology International. 23, 8, p. 551-560

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. CARCINOMA IN SITU OF THE TESTIS AND SEMINOMA EXPRESS A HIGH LEVEL OF LACTATE DEHYDROGENASE (LD) SUBUNIT B BUT NO LD SUBUNIT C

      BYRIALSEN, A., VON EYBEN, F. E. & Kristiansen, Karsten, 1998, In: Journal of Tumor Marker Oncology. 13, 2, p. 79-86

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Building the sequence map of the human pan-genome

      Li, R., Li, Y., Zheng, H., Luo, R., Zhu, H., Li, Q., Qian, W., Ren, Y., Tian, G., Li, J., Zhou, G., Zhu, X., Wu, H., Qin, J., Jin, X., Li, D., Cao, H., Hu, X., Blanche, H., Cann, H. & 7 others, Zhang, X., Li, S., Bolund, L., Kristiansen, Karsten, Yang, H., Wang, J. & Wang, J., 2010, In: Nature Biotechnology. 28, 1, p. 57-63 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Body fluid from the parasitic worm Ascaris suum inhibits broad-acting pro-inflammatory programs in dendritic cells

      Arora, P., Moll, J. M., Andersen, D., Workman, C. T., Williams, Andrew Richard, Kristiansen, Karsten & Brix, S., 2020, In: Immunology. 159, 3, p. 322-334

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Bioactive components from flowers of Sambucus nigra L. increase glucose uptake in primary porcine myotube cultures and reduce fat accumulation in Caenorhabditis elegans

      Bhattacharya, S., Christensen, K. B., Olsen, L. C. B., Christensen, L. P., Grevsen, K., Færgeman, N. J., Kristiansen, Karsten, Young, J. F. & Oksbjerg, N., 2013, In: Journal of Agricultural and Food Chemistry. 61, 46, p. 11033-11040 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

      Matey-Hernandez, M. L., Danish Pan Genome Consortium, D. P. G. C., Brunak, Søren, Izarzugaza, J. M. G., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J., Eiberg, Hans Rudolf Lytchoff & Kristiansen, Karsten, 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Automatic inducer addition and harvesting of recombinant Escherichia coli cultures based on indirect on-line estimation of biomass concentration and specific growth rate

      Eriksen, N. T., Kratchmarova, I., Neve, S., Kristiansen, Karsten & Iversen, J. J., 2001, In: Biotechnology and Bioengineering (Print). 75, 3, p. 355-61 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

      Fang, Chao, Zhong, H., Lin, Y., Chen, B., Han, Mo, Ren, H., Lu, H., Luber, J. M., Xia, M., Li, W., Stein, S., Xu, X., Zhang, W., Drmanac, R., Wang, J., Yang, H., Hammarström, L., Kostic, A. D., Kristiansen, Karsten & Li, J., 2017, In: GigaScience. 7, 3, p. 1-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Assessment of fecal DNA extraction protocols for metagenomic studies

      Yang, F., Sun, J., Luo, H., Ren, H., Zhou, H., Lin, Y., Han, Mo, Chen, B., Liao, H., Brix, S., Li, J., Yang, H., Kristiansen, Karsten & Zhong, H., 2020, In: GigaScience. 9, 7, 12 p., giaa071.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Assembly and analysis of 100 full MHC haplotypes from the Danish population

      Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R. & 39 others, Ye, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., Beusekom, J. V., Espeseth, T., Flindt, E., Halager, A. E., Hellard, S. L., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, Torben, Bolund, L., Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Gupta, R., Rasmussen, Simon, Børglum, A. D., Wang, J., Eiberg, Hans Rudolf Lytchoff, Kristiansen, Karsten, Brunak, Søren & Schierup, M. H., Sep 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Arachidonic acid-dependent inhibition of adipocyte differentiation requires PKA activity and is associated with sustained expression of cyclooxygenases

      Petersen, R. K., Jørgensen, C., Rustan, A. C., Frøyland, L., Muller-Decker, K., Furstenberger, G., Berge, R. K., Kristiansen, Karsten & Madsen, L., 2003, In: Journal of Lipid Research. 44, 12, p. 2320-30 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Applied Hologenomics: Feasibility and Potential in Aquaculture

      Limborg, Morten Tønsberg, Alberdi, Antton, Kodama, M., Roggenbuck, M., Kristiansen, Karsten & Gilbert, M Thomas P, 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Aniline is rapidly converted into Paracetamol impairing male reproductive development

      Holm, J. B., Chalmey, C., Modick, H., Jensen, L. S., Dierkes, G., Weiss, T., Jensen, Benjamin Anderschou Holbech, Nørregard, M. M., Borkowski, K., Styrishave, Bjarne, Koch, H. M., Mazaud-Guittot, S., Jegou, B., Kristiansen, Karsten & Kristensen, D. M., 2015, In: Toxicological Sciences. 148, 1, p. 288-298 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Ancient human genome sequence of an extinct Palaeo-Eskimo

      Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Analysis of beta-catenin, Ki-ras, and microsatellite stability in azoxymethane-induced colon tumors of BDIX/Orl Ico rats

      Sørensen, N. M., Kobaek-Larsen, M., Bonne, A., van Zutphen, B., Fenger, C., Kristiansen, Karsten & Ritskes-Hoitinga, M., 2003, In: Comparative Medicine. 53, 6, p. 633-8 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

      Skov, L., Schierup, M. H., Danish Pan Genome Consortium, D. P. G. C., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Rasmussen, Simon, Kristiansen, Karsten & Brunak, Søren, 2017, In: PLOS Genetics. 13, 8, p. e1006834

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Analyses of gut microbiota and plasma bile acids enable stratification of patients for antidiabetic treatment

      Gu, Y., Wang, X., Li, J., Zhang, Y., Zhong, H., Liu, R., Zhang, D., Feng, Q., Xie, X., Hong, J., Ren, H., Liu, W., Ma, J., Su, Q., Zhang, H., Yang, J., Wang, X., Zhao, X., Gu, W., Bi, Y. & 11 others, Peng, Y., Xu, X., Xia, H., Li, F., Xu, X., Yang, H., Xu, G., Madsen, L., Kristiansen, Karsten, Ning, G. & Wang, W., 27 Nov 2017, In: Nature Communications. 8, 12 p., 1785.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. An intron in a ribosomal protein gene from Tetrahymena

      Nielsen, H., Andreasen, P. H., Dreisig, H., Kristiansen, Karsten & Engberg, J., 1986, In: EMBO Journal. 5, 10, p. 2711-2717 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      An integrated catalog of reference genes in the human gut microbiome

      Li, J., Jia, H., Cai, X., Zhong, H., Feng, Q., Sunagawa, S., Arumugam, M., Kultima, J. R., Prifti, E., Nielsen, T., Juncker, A., Manichanh, C., Chen, B., Zhang, W., Levenez, F., Wang, J., Xu, X., Xiao, L., Liang, S., Zhang, D. & 17 others, Zhang, Z., Chen, W., Zhao, H., Al-Aama, J. Y., Edris, S., Yang, H., Wang, J., Hansen, Torben, Nielsen, H. B., Brunak, S., Kristiansen, Karsten, Guarner, F., Pedersen, Oluf Borbye, Doré, J., Ehrlich, S. D., Bork, P. & Wang, J., 2014, In: Nature Biotechnology. 32, 8, p. 834-845 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. An improved PCR-based method for site directed mutagenesis using megaprimers

      Brøns-Poulsen, J., Petersen, N. E., Hørder, M. & Kristiansen, Karsten, 1998, In: Molecular and Cellular Probes. 12, 6, p. 345-8 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      An esophageal squamous cell carcinoma classification system that reveals potential targets for therapy

      Xiong, T., Wang, M., Zhao, J., Liu, Q., Yang, C., Luo, W., Li, X., Yang, H., Kristiansen, Karsten, Roy, B. & Zhou, Y., 25 Jul 2017, In: OncoTarget. 8, 30, p. 49851-49860 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

      Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, T. & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. An LDL receptor promoter mutation in a heterozygous FH patient with dramatically skewed ratio between the two allelic mRNA variants

      Jensen, L. G., Jensen, H. K., Nissen, H., Kristiansen, Karsten, Faergeman, O., Bolund, L. & Gregersen, N., 1996, In: Human Mutation. 7, 1, p. 82-4 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      An Expanded Gene Catalog of Mouse Gut Metagenomes

      Zhu, J., Ren, H., Zhong, H., Li, Xiaoping, Zou, Y., Han, Mo, Li, M., Madsen, L., Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      An Aboriginal Australian genome reveals separate human dispersals into Asia

      Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C. & 38 others, Moreno Mayar, J. Víctor, Muller, C., Dortch, J., Gilbert, M Thomas P, Lund, O., Wesolowska, A., Karmin, M., Weinert, L. A., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., van Driem, G., Jha, A. R., Ricaut, F., de Knijff, P., Migliano, A. B., Gallego Romero, I., Kristiansen, Karsten, Lambert, D. M., Brunak, Søren, Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, C. D., Krogh, Anders, Foley, R. A., Lahr, M. M., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Wang, J. & Willerslev, Eske, 2011, In: Science. 334, 6052, p. 94-98 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      All-trans retinoic acid increases oxidative metabolism in mature adipocytes

      Mercader, J., Madsen, L., Felipe, F., Palou, A., Kristiansen, Karsten & Bonet, M. L., 2007, In: Cellular Physiology and Biochemistry. 20, 6, p. 1061-72 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Age-dependent changes in the gut microbiota and serum metabolome correlate with renal function and human aging

      Sun, L., Li, Z., Hu, C., Ding, J., Zhou, Q., Pang, G., Wu, Z., Yang, R., Li, S., Li, J., Cai, J., Sun, Y., Li, R., Zhen, H., Sun, S., Zhang, J., Fang, M., Chen, Z., Lv, Y., Cao, Q. & 36 others, Sun, Y., Gong, R., Huang, Z., Duan, Y., Liu, H., Dong, J., Li, J., Ruan, J., Lu, H., He, B., Li, N., Li, T., Xue, W., Li, Y., Shen, J., Yang, F., Zhao, C., Liang, Q., Zhang, M., Chen, C., Gong, H., Hou, Y., Wang, J., Zhang, Y., Yang, H., Zhu, S., Xiao, L., Jin, Z., Guo, H., Zhao, P., Brix, S., Xu, X., Jia, H., Kristiansen, Karsten, Yang, Z. & Nie, C., 2023, In: Aging Cell. 22, 12, 20 p., e14028.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Age-dependent alterations of glucose clearance and homeostasis are temporally separated and modulated by dietary fat

      Damgaard, Mads Vargas, Pærregaard, S. I., Søgaard, I., Andersen, M. A., Paulson, J. N., Treebak, Jonas Thue, Sina, C., Holm, J. B., Kristiansen, Karsten & Jensen, Benjamin Anderschou Holbech, 2018, In: Journal of Nutritional Biochemistry. 54, p. 66-76 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Adipose MDM2 regulates systemic insulin sensitivity

      Hallenborg, P., Jensen, Benjamin Anderschou Holbech, Fjære, E., Petersen, R. K., Belmaâti, M. S., Rasmussen, S. S., Gunnarsson, J. P., Lauritzen, P., Cheng, K. K. Y., Hermansson, M., Sonne, Si Brask, Ejsing, C. S., Xu, A., Kratchmarova, I., Krüger, M., Madsen, L., Kristiansen, Karsten & Blagoev, B., 2021, In: Scientific Reports. 11, 17 p., 21839.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Adipocyte differentiation of 3T3-L1 preadipocytes is dependent on lipoxygenase activity during the initial stages of the differentiation process

      Madsen, L., Petersen, R. K., Sørensen, M. B., Jørgensen, C., Hallenborg, P., Pridal, L., Fleckner, J., Amri, E., Krieg, P., Furstenberger, G., Berge, R. K. & Kristiansen, Karsten, 2003, In: Biochemical Journal. 375, Pt 3, p. 539-49 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      Adipocyte differentiation of 3T3-L1 preadipocytes is dependent on lipoxygenase activity during the initial stages of the differentiation process

      Madsen, L., Petersen, R. K., Sørensen, M. B., Jørgensen, C., Hallenborg, P., Pridal, L., Fleckner, J., Amri, E., Krieg, P., Furstenberger, G., Berge, R. K. & Kristiansen, Karsten, 2003, In: Biochemical Journal. 375, Pt 3, p. 539-49 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. Acyl-CoA-binding protein/diazepam-binding inhibitor gene and pseudogenes. A typical housekeeping gene family

      Mandrup, S., Hummel, R., Ravn, S., Jensen, G., Andreasen, P. H., Gregersen, N., Knudsen, J. & Kristiansen, Karsten, 1992, In: Journal of Molecular Biology. 228, 3, p. 1011-22 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Acyl-CoA-binding protein (ACBP) can mediate intermembrane acyl-CoA transport and donate acyl-CoA for beta-oxidation and glycerolipid synthesis

      Rasmussen, J. T., Faergeman, N. J., Kristiansen, Karsten & Knudsen, J., 1994, In: Biochemical Journal. 299 ( Pt 1), p. 165-70 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Acyl-CoA Esters Antagonize the Effects of Ligands on Peroxisome Proliferator-activated Receptor a Conformation, DNA Binding, and Interaction with Co-factors

      Elholm, M., Dam, I., Jorgensen, C., Krogsdam, A. M., Holst, D., Kratchmarova, I., Gottlicher, M., Gustafsson, J. A., Berge, R., Flatmark, T., Knudsen, J., Mandrup, S. & Kristiansen, Karsten, 2001, In: Journal of Biological Chemistry. 276, 24, p. 21410-6 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Acute infection with the intestinal parasite Trichuris muris has long-term consequences on mucosal mast cell homeostasis and epithelial integrity

      Sorobetea, D., Holm, J. B., Henningsson, H., Kristiansen, Karsten & Svensson-Frej, M., Feb 2017, In: European Journal of Immunology. 47, 2, p. 257-268 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      Activation of the angiopoietin-like 4 (ANGPLT4) gene by milk fat and casein

      Nielsen, S. D., Young, J. F., Mortensen, G., Petersen, R. K., Kristiansen, Karsten & Dalsgaard, T. K., 2014, In: International Dairy Journal. 36, 2, p. 136-142 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Activation of protein kinase A and exchange protein directly activated by cAMP promotes adipocyte differentiation of human mesenchymal stem cells

      Jia, B., Madsen, L., Petersen, R. K., Techer, N., Kopperud, R., Ma, T., Døskeland, S. O., Ailhaud, G., Wang, J., Amri, E. & Kristiansen, Karsten, 2012, In: P L o S One. 7, 3, 11 p., 0034114.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Activation of liver X receptors prevents statin-induced death of 3T3-L1 preadipocytes

      Madsen, L., Petersen, R. K., Steffensen, K. R., Pedersen, L. M., Hallenborg, P., Ma, T., Frøyland, L., Døskeland, S. O., Gustafsson, J. & Kristiansen, Karsten, 2008, In: Journal of Biological Chemistry. 283, 33, p. 22723-22736 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      Activation of PPARgamma by Metabolites from the Flowers of Purple Coneflower (Echinacea purpurea)

      Christensen, K. B., Petersen, R. K., Petersen, S., Kristiansen, Karsten & Christensen, L. P., 2009, In: Journal of Natural Products. 72, 5, p. 933–937

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Published

      Aberrant intestinal microbiota in individuals with prediabetes

      Allin, K. H., Tremaroli, V., Caesar, R., Jensen, Benjamin Anderschou Holbech, Damgaard, Mads Vargas, Bahl, M. I., Licht, T. R., Hansen, T. H., Nielsen, T., Dantoft, T. M., Linneberg, Allan René, Jørgensen, T., drb459, drb459, Kristiansen, Karsten, Franks, P. W., IMI-DIRECT consortium, I. C., Hansen, Torben, Bäckhed, G. F. & Pedersen, Oluf Borbye, Apr 2018, In: Diabetologia. 61, 4, p. 810-820 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      ADD1/SREBP1c activates the PGC1-alpha promoter in brown adipocytes

      Hao, Q., Hansen, Jacob B., Petersen, R. K., Hallenborg, P., Jørgensen, C., Cinti, S., Larsen, P. J., Steffensen, K. R., Wang, H., Collins, S., Wang, J., Gustafsson, J., Madsen, L. & Kristiansen, Karsten, 2010, In: BBA General Subjects. 1801, 4, p. 421-9 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. A val-val sequence found in a human monocytic leukemia lysozyme

      Thomsen, J., Lund, E., Kristiansen, Karsten, Brunfeldt, K. & Malmquist, J., 1972, In: FEBS Letters. 22, 1, p. 34-36 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Published

      A transomic cohort as a reference point for promoting a healthy human gut microbiome

      Jie, Z., Liang, S., Ding, Q., Li, F., Tang, S., Wang, D., Lin, Y., Chen, P., Cai, K., Qiu, X., Li, Q., Liao, Y., Zhou, D., Lian, H., Zuo, Y., Chen, X., Rao, W., Ren, Y., Wang, Y., Zi, J. & 17 others, Wang, R., Zhou, H., Lu, H., Wang, X., Zhang, W., Zhang, T., Xiao, L., Zong, Y., Liu, W., Yang, H., Wang, J., Hou, Y., Liu, X., Kristiansen, Karsten, Zhong, H., Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 8, 10 p., 100039.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. E-pub ahead of print

      A spatiotemporal atlas of mouse liver homeostasis and regeneration

      Xu, J., Guo, P., Hao, S., Shangguan, S., Shi, Q., Volpe, G., Huang, K., Zuo, J., An, J., Yuan, Y., Cheng, M., Deng, Q., Zhang, X., Lai, G., Nan, H., Wu, B., Shentu, X., Wu, L., Wei, X., Jiang, Y. & 38 others, Huang, X., Pan, F., Song, Y., Li, R., Wang, Z., Liu, C., Liu, S., Li, Y., Yang, T., Xu, Z., Du, W., Li, L., Ahmed, T., You, K., Dai, Z., Li, L., Qin, B., Li, Y., Lai, L., Qin, D., Chen, J., Fan, R., Li, Y., Hou, J., Ott, M., Sharma, A. D., Cantz, T., Schambach, A., Kristiansen, Karsten, Hutchins, A. P., Göttgens, B., Maxwell, P. H., Hui, L., Xu, X., Liu, L., CHEN, Ao, Lai, Y. & Esteban, M. A., 2024, (E-pub ahead of print) In: Nature Genetics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies: [plus] Erratum

      Cao, H., Wang, Y., Zhang, W., Chai, X., Zhang, X., Chen, S., Yang, F., Zhang, C., Guo, Y., Liu, Y., Tang, Z., Chen, C., Xue, Y., Zhen, H., Xu, Y., Rao, B., Liu, T., Zhao, M., Zhang, W., Li, Y. & 6 others, Zhang, X., Tellier, L. C. A. M., Krogh, Anders, Kristiansen, Karsten, Wang, J. & Li, J., 2013, In: Human Mutation. 34, 12, p. 1715-1720 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Published

      A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation

      Danneskiold-Samsøe, Niels Banhos, Andersen, D., Radulescu, I. D., Hansen, Ann Normann, Brejnrod, A. D., Kragh, M., Madsen, T., Nielsen, C., Josefsen, K. E., Fretté, X., Fjære, E., Madsen, L., Hellgren, L. I., Brix, S. & Kristiansen, Karsten, May 2017, In: Molecular Nutrition & Food Research. 61, 5, 11 p., 1600528.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      A reference gene catalogue of the pig gut microbiome

      Xiao, L., Estellé, J., Kiilerich, P., Ramayo-Caldas, Y., Xia, Z., Feng, Q., Liang, S., Pedersen, A. Ø., Kjeldsen, N. J., Liu, C., Maguin, E., Doré, J., Pons, N., Le Chatelier, E., Prifti, E., Li, J., Jia, H., Liu, X., Xu, X., Ehrlich, S. D. & 4 others, Madsen, L., Kristiansen, Karsten, Rogel-Gaillard, C. & Wang, J., 2016, In: Nature Microbiology. 1, 6 p., 16161.

      Research output: Contribution to journal › Letter › Research › peer-review

    48. Published

      A randomised, controlled, crossover study of the effect of diet on angiopoietin-like protein 4 (ANGPTL4) through modification of the gut microbiome

      Blædel, T., Holm, J. B., Sundekilde, U. K., Schmedes, M. S., Hess, A. L., Lorenzen, J. K., Kristiansen, Karsten, Dalsgaard, T. K., Astrup, A. & Larsen, L. H., 2016, In: Journal of Nutritional Science. 5, 10 p., e45.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes

      Kratchmarova, I., Kalume, D. E., Blagoev, B., Scherer, P. E., Podtelejnikov, A. V., Molina, H., Bickel, P. E., Andersen, J. S., Fernandez, M. M., Bunkenborg, J., Roepstorff, P., Kristiansen, Karsten, Lodish, H. F., Mann, M. & Pandey, A., 2002, In: Molecular and Cellular Proteomics. 1, 3, p. 213-22 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      A porcine brain-wide RNA editing landscape

      Huang, J., Lin, L., Dong, Z., Yang, L., Zheng, T., Gu, W., Zhang, Y., Yin, T., Sjöstedt, E., Mulder, J., Uhlén, M., Kristiansen, Karsten, Bolund, L. & Luo, Y., 2021, In: Communications Biology . 4, 12 p., 717.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Published

      A pilot study of assessing whole genome sequencing in newborn screening in unselected children in China

      Jian, M., Wang, X., Sui, Y., Fang, M., Feng, C., Huang, Y., Liu, C., Guo, R., Guan, Y., Gao, Y., Wang, Z., Li, S., Cheng, B., Sun, L., Cui, F., Guo, J., Zhan, Y., Zhang, G., Zheng, L., Su, F. & 14 others, Xue, W., Qian, P., Gao, S., Chen, J., Guan, L., Lu, H., Kristiansen, Karsten, Jin, X., Chen, F., Zhao, Y., Hammarström, L., Jiang, X., Liu, J. & Gao, Y., 2022, In: Clinical and Translational Medicine. 12, 6, 12 p., e843.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    52. Published

      A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses

      Han, Mo, Hao, L., Lin, Y., Li, F., Wang, J., Yang, H., Xiao, L., Kristiansen, Karsten, Jia, H. & Li, J., 2018, In: Microbiome. 6, 7 p., 43.

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. Published

      A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

      Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Published

      A metagenome-wide association study of gut microbiota in type 2 diabetes

      Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., Peng, Y., Zhang, D., Jie, Z., Wu, W., Qin, Y., Xue, W., Li, J., Han, L., Lu, D., Wu, P. & 36 others, Dai, Y., Sun, X., Li, Z., Tang, A., Zhong, S., Li, X., Chen, W., Xu, R., Wang, M., Feng, Q., Gong, M., Yu, J., Zhang, Y., Zhang, M., Hansen, Torben, Sanchez, G., Raes, J., Falony, G., Okuda, S., Almeida, M., LeChatelier, E., Renault, P., Pons, N., Batto, J., Zhang, Z., Chen, H., Yang, R., Zheng, W., Li, S., Yang, H., Wang, J., Ehrlich, S. D., Nielsen, R., Pedersen, Oluf Borbye, Kristiansen, Karsten & Wang, J., 2012, In: Nature. 490, 7418, p. 55-60 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    55. Published

      A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults

      Hansen, L. B. S., Roager, H. M., Søndertoft, N. B., Gøbel, R. J., Kristensen, M. B., Vallès-Colomer, M., Vieira-Silva, S., Ibrügger, S., Lind, M. V., Mærkedahl, R. B., Bahl, M. I., Madsen, M. L., Havelund, J., Falony, G., Tetens, I., Nielsen, T., Allin, K. H., Frandsen, H. L., Hartmann, B., Holst, J. J. & 32 others, Sparholt, M. H., Holck, J., Blennow, Andreas, Moll, J. M., Meyer, A. S., Hoppe, C., Poulsen, J. H., Carvalho, V., Sagnelli, D., Dalgaard, M. D., Christensen, A. F., Lydolph, M., Ross, A. B., Villas-Bôas, S. G., Brix, S., Sicheritz-Pontén, T., Buschard, K., Linneberg, Allan René, Rumessen, J. J., Ekstrøm, Claus Thorn, Ritz, C., Kristiansen, Karsten, Nielsen, H. B., drb459, drb459, Færgeman, N. J., Raes, J., Frøkiær, Hanne, Hansen, Torben, Lauritzen, Lotte, Gupta, R., Licht, T. R. & Pedersen, Oluf Borbye, 2018, In: Nature Communications. 9, 13 p., 4630.

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. A human homologue of Escherichia coli ClpP caseinolytic protease: recombinant expression, intracellular processing and subcellular localization

      Corydon, T. J., Bross, P., Holst, H. U., Neve, S., Kristiansen, Karsten, Gregersen, N. & Bolund, L., 1998, In: Biochemical Journal. 331 ( Pt 1), p. 309-16 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Published

      A human gut microbial gene catalogue established by metagenomic sequencing

      MetaHIT Consortium, M. C., 2010, In: Nature. 464, 7285, p. 59-65 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. Published

      A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases

      Liu, X., Tang, S., Zhong, H., Tong, X., Jie, Z., Ding, Q., Wang, D., Guo, R., Xiao, L., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W., Liu, X., Zhang, Y., Brix, S., Kristiansen, K., Hou, Y., Jia, H. & 1 others, Zhang, T., 2021, In: Cell Discovery. 7, 15 p., 9.

      Research output: Contribution to journal › Journal article › Research › peer-review

    59. Published

      A gene catalogue of the Sprague-Dawley rat gut metagenome

      Pan, H., Guo, R., Zhu, J., Wang, Q., Ju, Y., Xie, Y., Zheng, Y., Wang, Z., Li, T., Liu, Z., Lu, L., Li, F., Tong, B., Xiao, L., Xu, X., Li, R., Yuan, Z., Yang, H., Wang, J., Kristiansen, K. & 2 others, Jia, H. & Liu, L., 2018, In: GigaScience. 7, 5, 8 p., giy055.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Published

      A consortium of three-bacteria isolated from human feces inhibits formation of atherosclerotic deposits and lowers lipid levels in a mouse model

      Jie, Z., Zhu, Q., Zou, Y., Wu, Q., Qin, M., He, D., Lin, X., Tong, X., Zhang, J., Jie, Z., Luo, W., Xiao, X., Chen, S., Wu, Y., Guo, G., Zheng, S., Li, Y., Lai, W., Yang, H., Wang, J. & 6 others, Xiao, L., Chen, J., Zhang, T., Kristiansen, Karsten, Jia, H. & Zhong, S., 2023, In: iScience. 26, 6, 22 p., 106960.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Published

      A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens)

      Hildebrand, F., Ebersbach, T., Nielsen, H. B., Li, X., Sonne, Si Brask, dos Santos, M. B. Q., Dimitrov, P., Madsen, L., Qin, J., Wang, J., Raes, J., Kristiansen, Karsten & Licht, T. R., 2012, In: B M C Genomics. 13, 514, 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    62. A common W556S mutation in the LDL receptor gene of Danish patients with familial hypercholesterolemia encodes a transport-defective protein

      Jensen, H. K., Holst, H., Jensen, L. G., Jørgensen, M. M., Andreasen, P. H., Jensen, T. G., Andresen, B. S., Heath, F., Hansen, P. S., Neve, S., Kristiansen, Karsten, Faergeman, O., Kølvraa, S., Bolund, L. & Gregersen, N., 1997, In: Atherosclerosis. 131, 1, p. 67-72 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    63. Published

      A catalog of the mouse gut metagenome: [incl. Author Correction]

      Xiao, L., Feng, Q., Liang, S., Sonne, S. B., Xia, Z., Qiu, X., Li, X., Long, H., Zhang, J., Zhang, D., Liu, C., Fang, Z., Chou, J., Glanville, J., Hao, Q., Kotowska, D. E., Colding, C. S., Licht, T. R., Wu, D., Yu, J. & 17 others, Sung, J. J. Y., Liang, Q., Li, J., Jia, H., Lan, Z., Tremaroli, V., Dworzynski, P., Nielsen, H. B., Bäckhed, G. F., Dore, J., Le Chatelier, E., Ehrlich, S. D., Lin, J. C., Arumugam, Mani, Wang, J., Madsen, L. & Kristiansen, Karsten, 2015, In: Nature Biotechnology. 33, 10, p. 1103-1108 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. Published

      A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

      Li, J., Zhong, H., Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estellé, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Yang, F., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X. & 7 others, Yang, H., Wang, J., Madsen, L., Kristiansen, Karsten, Henrissat, B., Ehrlich, S. D. & Morgavi, D. P., 2020, In: GigaScience. 9, 6, 15 p., giaa057.

      Research output: Contribution to journal › Journal article › Research › peer-review

    65. Published

      A catalog of bacterial reference genomes from cultivated human oral bacteria

      Li, W., Liang, H., Lin, X., Hu, T., Wu, Z., He, W., Wang, M., Zhang, J., Jie, Zhuye, Jin, X., Xu, X., Wang, J., Yang, H., Zhang, W., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: npj Biofilms and Microbiomes. 9, 1, 13 p., 45.

      Research output: Contribution to journal › Journal article › Research › peer-review

    66. Published

      A Sleeping Beauty DNA transposon-based genetic sensor for functional screening of vitamin D3 analogues

      Staunstrup, N. H., Sharma, N., Bak, R. O., Svensson, L., Petersen, T. K., Aarenstrup, L., Kristiansen, Karsten, Bolund, L. & Mikkelsen, J. G., 2011, In: B M C Biotechnology. 11, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. Published

      A Mixture of cod and scallop protein reduces adiposity and improves glucose tolerance in high-fat fed male C57BL/6J mice

      Tastesen, H. S., Rønnevik, A. K., Borkowski, K., Madsen, L., Kristiansen, Karsten & Liaset, B., 2014, In: P L o S One. 9, 11, 12 p., e112859.

      Research output: Contribution to journal › Journal article › Research › peer-review

    68. Published

      A Gluten-Free Diet during Pregnancy and Early Life Increases Short Chain Fatty Acid-Producing Bacteria and Regulatory T Cells in Prediabetic NOD Mice

      Johansen, Valdemar Brimnes Ingemann, Færø, D., Buschard, K., Kristiansen, Karsten, Pociot, Flemming, Kiilerich, P., Josefsen, K., Haupt-jorgensen, M. & Antvorskov, J. C., 2023, In: Cells. 12, 12, 15 p., 1567.

      Research output: Contribution to journal › Journal article › Research › peer-review

    69. Published

      A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data

      Han, B., Jing, Y., Dai, J., Zheng, T., Gu, F., Zhao, Q., Zhu, F., Song, X., Deng, H., Wei, P., Song, C., Liu, D., Jiang, X., Wang, F., Chen, Y., Sun, C., Yao, H., Zhang, L., Chen, N., Chen, S. & 17 others, Li, X., Wei, Y., Ouyang, Z., Yan, H., Lu, J., Wang, H., Guo, L., Kong, L., Zhao, J., Li, S., Luo, L., Kristiansen, Karsten, Feng, Z., Sun, S., Chen, C., Yue, Z. & Chen, N., 2020, In: Genome Biology and Evolution. 12, 12, p. 2486-2490 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    70. Published

      Prevotella-to-Bacteroides ratio predicts body weight and fat loss success on 24-week diets varying in macronutrient composition and dietary fiber: results from a post-hoc analysis

      Hjorth, Mads Fiil, Blædel, T., Bendtsen, L. Q., Lorenzen, J. K., Holm, J. B., Kiilerich, P., Roager, Henrik Munch, Kristiansen, Karsten, Larsen, L. H. & Astrup, A., 1 Jan 2019, In: International Journal of Obesity. 43, 1, p. 149-157

      Research output: Contribution to journal › Journal article › Research › peer-review

    71. Published

      In vitro digestion mimicking conditions in young and elderly reveals marked differences between profiles and potential bioactivity of peptides from meat and soy proteins

      Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Research International. 157, 11 p., 111215.

      Research output: Contribution to journal › Journal article › Research › peer-review

    72. Published

      De novo assembly of a haplotype-resolved human genome

      Cao, H., Wu, H., Luo, R., Huang, S., Sun, Y., Tong, X., Xie, Y., Liu, B., Yang, H., Zheng, H., Li, J., Li, B., Wang, Y., Yang, F., Sun, P., Liu, S., Gao, P., Huang, H., Sun, J., Chen, D. & 21 others, He, G., Huang, W., Huang, Z., Li, Y., Tellier, L. C. A. M., Liu, X., Feng, Q., Xu, X., Zhang, X., Bolund, L., Krogh, Anders, Kristiansen, Karsten, Drmanac, R., Drmanac, S., Nielsen, R., Li, S., Wang, J., Yang, H., Li, Y., Wong, G. K. & Wang, J., 2015, In: Nature Biotechnology. 33, 6, p. 617-626 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    73. 7-Deaza purine bases offer a higher ion stability in the analysis of dna by matrix-assisted laser desorption/ionization mass spectrometry

      Kirpekar, F., Nordhoff, E., Kristiansen, Karsten, Roepstorff, P., Hahner, S. & Hillenkamp, F., 1995, In: Rapid Communications in Mass Spectrometry. 9, 6, p. 525 - 531

      Research output: Contribution to journal › Journal article › Research › peer-review

    74. Published

      2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice

      Andersen, C., Schjoldager, J. G., Tortzen, C., Vegge, A., Hufeldt, M. R., Skaanild, M. T., Vogensen, Finn Kvist, Kristiansen, Karsten, Hansen, Axel Kornerup & Nielsen, J., 2013, In: Journal of Biomedicine and Biotechnology. 2013, 13 p., 926942.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. Published

      2-(2-Bromophenyl)-formononetin and 2-heptyl-formononetin are PPARγ partial agonists and reduce lipid accumulation in 3T3-L1 adipocytes

      Andersen, C., Kotowska, D. E., Tortzen, C., Kristiansen, Karsten, Nielsen, J. & Petersen, R. K., 2014, In: Bioorganic and Medicinal Chemistry. 22, 21, p. 6105-6111 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    76. 1alpha,25-dihydroxyvitamin D3 stimulates activator protein 1 DNA-binding activity by a phosphatidylinositol 3-kinase/Ras/MEK/extracellular signal regulated kinase 1/2 and c-Jun N-terminal kinase 1-dependent increase in c-Fos, Fra1, and c-Jun expression in human keratinocytes

      Johansen, C., Kragballe, K., Henningsen, J., Westergaard, M., Kristiansen, Karsten & Iversen, L., 2003, In: Journal of Investigative Dermatology. 120, 4, p. 561-70 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. Published

      1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

      Zou, Y., Xue, W., Luo, G., Deng, Z., Qin, P., Guo, R., Sun, H., Xia, Y., Liang, S., Dai, Y., Wan, D., Jiang, R., Su, L., Feng, Q., Jie, Z., Guo, T., Xia, Z., Liu, C., Yu, J., Lin, Y. & 11 others, Tang, S., Huo, G., Xu, X., Hou, Y., Liu, X., Wang, J., Yang, H., Kristiansen, Karsten, Li, J., Jia, H. & Xiao, L., 2019, In: Nature Biotechnology. 37, 2, p. 179-185

      Research output: Contribution to journal › Journal article › Research › peer-review

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