Publications from

Total publications from unit:

2022

1.

Yusuke Himeoka, Bertil Gummesson, Michael A Sørensen, Sine Lo Svenningsen and Namiko Mitarai. (2022) Distinct Survival, Growth Lag, and rRNA Degradation Kinetics during Long-Term Starvation for Carbon or Phosphate mSphere 7(3).

2.

Janine Zara Bowring, Yue Su, Ahlam Alsaadi, Sine L. Svenningsen, Julian Parkhill and Hanne Ingmer. (2022) Screening for Highly Transduced Genes in Staphylococcus aureus Revealed Both Lateral and Specialized Transduction Microbiology Spectrum 10(1).

3.

Mikkel Skjoldan Svenningsen, Sine Lo Svenningsen, Michael Askvad Sørensen and Namiko Mitarai. (2022) Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse Life Science Alliance 5(2).

2021

4.

Kristoffer Skovbo Winther, Michael Askvad Sørensen and Sine Lo Svenningsen. (2021) Polyamines are Required for tRNA Anticodon Modification in Escherichia coli Journal of Molecular Biology 433(15).

5.

Na Li, Yigang Zeng, Bijie Hu, Tongyu Zhu, Sine Lo Svenningsen, Mathias Middelboe and Demeng Tan. (2021) Interactions between the Prophage 919TP and Its Vibrio cholerae Host: Implications of gmd Mutation for Phage Resistance, Cell Auto-Aggregation, and Motility Viruses 13(12).

6.

Thomas Søndergaard Stenum, Mette Kongstad, Erik Holmqvist, Birgitte Kallipolitis, Sine Lo Svenningsen and Michael Askvad Sørensen. (2021) Three Ribosomal Operons of Escherichia coli Contain Genes Encoding Small RNAs That Interact With Hfq and CsrA in vitro Frontiers in Microbiology 12.

7.

Thomas Prossliner, Kenn Gerdes, Michael Askvad Sørensen and Kristoffer Skovbo Winther. (2021) Hibernation factors directly block ribonucleases from entering the ribosome in response to starvation: [+ erratum] Nucleic Acids Research 49(4):2226-2239.

2020

8.

Bertil Gummesson, Shiraz Ali Shah, Alexander Skov Borum, Mathias Fessler, Namiko Mitarai, Michael Askvad Sørensen and Sine Lo Svenningsen. (2020) Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing Frontiers in Genetics 11.

9.

Demeng Tan, Mads Frederik Hansen, Luís Nunes de Carvalho, Henriette Lyng Røder, Mette Burmølle, Mathias Middelboe and Sine Lo Svenningsen. (2020) High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum The ISME Journal 14(7):1731-1742.

10.

Jesper Juel Mauritzen, Daniel Castillo, Demeng Tan, Sine Lo Svenningsen and Mathias Middelboe. (2020) Beyond Cholera: Characterization of zot-Encoding Filamentous Phages in the Marine Fish Pathogen Vibrio anguillarum Viruses 12(7).

11.

Mathias Fessler, Bertil Gummesson, Godefroid Charbon, Sine Lo Svenningsen and Michael Askvad Sørensen. (2020) Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid, or phosphate Molecular Microbiology 113(5):951-963.

2019

12.

Daniel Castillo, Nanna Rørbo, Jóhanna Jørgensen, Janina Lange, Demeng Tan, Panos G. Kalatzis, Sine Lo Svenningsen and Mathias Middelboe. (2019) Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum FEMS Microbiology Ecology 95(3).

13.

Mads Frederik Hansen, Sine Lo Svenningsen, Henriette Lyng Røder, Mathias Middelboe and Mette Burmølle. (2019) Big Impact of the Tiny: Bacteriophage–Bacteria Interactions in Biofilms Trends in Microbiology 27(9):739-752.

2018

14.

Rasmus Skytte Eriksen, Sine Lo Svenningsen, Kim Sneppen and Namiko Mitarai. (2018) A growing microcolony can survive and support persistent propagation of virulent phages Proceedings of the National Academy of Sciences USA (PNAS) 115(2):337-342.

15.

Michael Askvad Sørensen, Annaleigh Ohrt Fehler and Sine Lo Svenningsen. (2018) Transfer RNA instability as a stress response in Escherichia coli: rapid dynamics of the tRNA pool as a function of demand RNA Biology 15:586-593.

16.

Ryan William Paerl, John Sundh, Demeng Tan, Sine Lo Svenningsen, Samuel Hylander, Jarone Pinhassi, Anders F. Andersson and Lasse Riemann. (2018) Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability Proceedings of the National Academy of Sciences of the United States of America 115(44):E10447-E10456.

17.

Sine Lo Svenningsen. (2018) Small RNA-Based Regulation of Bacterial Quorum Sensing and Biofilm Formation Microbiology Spectrum 6(4).

18.

Thomas Prossliner, Kristoffer Skovbo Winther, Michael Askvad Sørensen and Kenn Gerdes. (2018) Ribosome Hibernation Annual Review of Genetics 52:321-348.

2017

19.

Thomas Søndergaard Stenum, Michael Askvad Sørensen and Sine Lo Svenningsen. (2017) Quantification of the abundance and charging levels of transfer RNAs in Escherichia coli Journal of Visualized Experiments 126.

20.

Vaibhhav Sinha, Akshit Goyal, Sine Lo Svenningsen, Szabolcs Semsey and Sandeep Krishna. (2017) In silico evolution of lysis-lysogeny strategies reproduces observed lysogeny propensities in temperate bacteriophages Frontiers in Microbiology 8.

21.

Alexander Harms, Cinzia Fino, Michael Askvad Sørensen, Szabolcs Semsey and Kenn Gerdes. (2017) Prophages and growth dynamics confound experimental results with antibiotic-tolerant persister cells mBio 8(6).

22.

Sine Lo Svenningsen, Mette Kongstad, Thomas Søndergaard Stenum, Ana Josefa Muñoz Gomez and Michael Askvad Sørensen. (2017) Transfer RNA is highly unstable during early amino acid starvation in Escherichia coli Nucleic Acids Research 45(2):793-804.

2016

23.

Chengzhe Tian, Mohammad Roghanian, Mikkel Girke Jørgensen, Kim Sneppen, Michael Askvad Sørensen, Kenn Gerdes and Namiko Mitarai. (2016) Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases Journal of Bacteriology 198(14):1918-1926.

2015

24.

Sabine Hansen, Sandeep Krishna, Szabolcs Semsey and Sine Lo Svenningsen. (2015) Effects of Four Different Regulatory Mechanisms on the Dynamics of Gene Regulatory Cascades Scientific Reports 5.

25.

Szabolcs Semsey, Christopher Campion, Abdu Mohamed and Sine Lo Svenningsen. (2015) How long can bacteriophage ? change its mind? Bacteriophage 5(1):e1012930.

26.

Demeng Tan, Sine Lo Svenningsen and Mathias Middelboe. (2015) Quorum sensing determines the choice of antiphage defense strategy in Vibrio anguillarum mBio 6(3).

2014

27.

Rebecca Bolt Ettlinger, Michael Askvad Sørensen and Lene Broeng Oddershede. (2014) Force spectroscopy of DNA and RNA: structure and kinetics from single-molecule experiments Nucleic Acid Nanotechnology 29:23-52.

28.

Sine Lo Svenningsen and Szabolcs Semsey. (2014) Commitment to lysogeny is preceded by a prolonged period of sensitivity to the late lytic regulator Q in bacteriophage ? Journal of Bacteriology 196(20):3582-3588.

2013

29.

Mette Eriksen, Peter Horvath, Michael Askvad Sørensen, Szabolcs Semsey, Lene Broeng Oddershede and Liselotte Jauffred Pedersen. (2013) A novel complex: a quantum dot conjugated to an active T7 RNA Polymerase Journal of Nanomaterials 2013.

30.

Nina Molin Høyland-Kroghsbo, Rasmus Baadsgaard Mærkedahl and Sine Svenningsen. (2013) A quorum-sensing-induced bacteriophage defense mechanism mBio 4(1):1-9.

2012

31.

Jesper Tholstrup Hansen, Lene Broeng Oddershede and Michael Askvad Sørensen. (2012) mRNA pseudoknot structures can act as ribosomal roadblocks Nucleic Acids Research 40(1):303-313.

2011

32.

Brian K Hammer and Sine Lo Svenningsen. (2011) Small RNA target genes and regulatory connections in the Vibrio cholerae quorum sensing system Quorum sensing - Methods and protocols 692:189-206.

33.

Kristian Moss Bendtsen, Janos Erdossy, Zsolt Csiszovski, Sine Lo Svenningsen, Kim Sneppen, Sandeep Krishna and Szabolcs Semsey. (2011) Direct and indirect effects in the regulation of overlapping promoters Nucleic Acids Research 39(16):6879-6885.

34.

Margit Pedersen, Søren Nissen, Namiko Mitarai, Sine Lo Svenningsen, Kim Sneppen and Steen Pedersen. (2011) The functional half-life of an mRNA depends on the ribosome spacing in an early coding region Journal of Molecular Biology 407(1):35-44.

2010

35.

Kimberly C. Tu, Tao Long, Sine Lo Svenningsen, Ned S. Wingreen and Bonnie L. Bassler. (2010) Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi qourum-sensing response Molecular Cell 37(4):567-579.

2009

36.

Sine L Svenningsen, Kimberly C Tu and Bonnie L Bassler. (2009) Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing EMBO Journal 28(4):429-39.

2008

37.

Sine L. Svenningsen. (2008) Small RNA control of cell-to-cell communication in Vibrio harveyi and Vibrio cholerae small RNA control of quorum sensing Evolution from Cellular to Social Scales:45-59.

38.

Kimberly C. Tu, Christopher M. Waters, Sine L. Svenningsen and Bonnie L. Bassler. (2008) A small-RNA-mediated negative feedback loop controls quorum-sensing dynamics in Vibrio harveyi Molecular Microbiology 70(4):896-907.

39.

Sine L. Svenningsen, Christopher M. Waters and Bonnie L. Bassler. (2008) A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode Genes and Development 22(2):226-238.

40.

Sine Lo Svenningsen. (2008) A small-RNA-mediated negative feedback loop controls quorum-sensing dynamics inVibrio harveyi Molecular Microbiology 70(4):896-907.

41.

Sine Lo Svenningsen. (2008) A negative feedback loop involving small RNAs accelerates Vibrio cholerae'stransition out of quorum-sensing mode Genes & Development 22(2):226-38.

2007

42.

Morten Ejby, Michael A Sørensen and Steen Pedersen. (2007) Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination. Proceedings of the National Academy of Science of the United States of America 104(49):19410-5.

43.

Thomas Møller Hansen, S Nader S Reihani, Lene B Oddershede and Michael A Sørensen. (2007) Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting. Proceedings of the National Academy of Science of the United States of America 104(14):5830-5.

2005

44.

K. A. Dittmar, Michael Askvad Sørensen, J. Elf, M. Ehrenberg and Tao Pan. (2005) Selective charging of tRNA isoacceptors induced by amino-acid starvation EMBO Reports 6(2):151–157.

45.

Michael Askvad Sørensen, J. Elf, E. Bouakaz, T. Tenson, S. Sanyal, G. R. Björk and M. Ehrenberg. (2005) Over Expression of a tRNALeu Isoacceptor Changes Charging Pattern of Leucine tRNAs and Reveals New Codon Reading Journal of Molecular Biology 354(1):16-24.

46.

Sine Lo Svenningsen, Nina Constantino, Donald L Court and Sankar Adhya. (2005) On the role of Cro in lambda prophage induction Proceedings of the National Academy of Science of the United States of America 102(12):4465-4469.

2003

47.

Kristoffer Torbjørn Bæk, Sine Lo Svenningsen, Harvey Eisen, Kim Sneppen and Stanley Brown. (2003) Single-cell Analysis of Lambda Immunity Regulation Journal of Molecular Biology 334(3):363-372.

2001

48.

M.A. Sørensen. (2001) Charging Levels of Four tRNA Species in Escherichia coli Rel+ and REL- Strains during Amino Acid Starvation: A Simple Model for the Effect of ppGpp on Translational Accuracy Journal of Molecular Biology 307(3):785-798.

1998

49.

Malene K. Krüger, Steen Pedersen, Tord G. Hagervall and Michael A. Sørensen. (1998) The modification of the wobble base of tRNA(Glu) modulates the translation rate of glutamic acid codons in vivo Journal of Molecular Biology 284(3):621-631.

50.

M.A. Sørensen, J. Fricke and Steen Pedersen. (1998) Ribosomal Protein S1 required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo Journal of Molecular Biology(280):561-569.

51.

Malene Kappen Krüger and M.A. Sørensen. (1998) Aminoacylation of hypomodified tRNAGlu in vivo Journal of Molecular Biology 284(3):609-620.

52.

Malene Kappen Krüger, Steen Pedersen, T.G. Hagervall and M.A. Sørensen. (1998) The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo J. Mol. Biol.(284):609-620.

1994

53.

M.A. Sørensen, K.F. Jensen and Steen Pedersen. (1994) High Concentrations of ppGpp Decrease the RNA Chain Growth Rate. Implications for Protein Synthesis and Translation Fidelity During Amino Acid Starvation in Escherichia coli Journal of Molecular Biology:441-454.

1993

54.

J. Vind, M.A. Sørensen, M.D. Rasmussen and Steen Pedersen. (1993) Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes Journal of Molecular Biology:678-688.

55.

M.D. Rasmussen, M.A. Sørensen and Steen Pedersen. (1993) Isolation and characterization of mutants with impaired regulation of rpsA, the gene encoding ribosomal protein S1 of Escherichia coli Molecular Genetics and Genomics 240:23-28.

1992

56.

U. Vogel, M.A. Sørensen, Steen Pedersen, Kaj Frank Jensen and M. Kilstrup. (1992) Decreasing transcription elongation rate in Escherichia coli exposed to amino acid starvation Molecular Microbiology 6(15):2191-2200.

1991

57.

M.A. Sørensen and Steen Pedersen. (1991) Absolute in vivo translation rates of individual codons in Escherichia coli: The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate Journal of Molecular Biology 222(2):265-280.

58.

M.A. Sørensen and Steen Pedersen. (1991) Cysteine, Even in Low Concentrations, Induces Transient Amino Acid Starvation in Escherichia coli J. Bacteriol.:5244-46.

1989

59.

Michael Askvad Sørensen, C G Kurland and Steen Pedersen. (1989) Codon usage determines translation rate in Escherichia coli Journal of Molecular Biology 207(2):365-77.

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