Department of Biology

 

 
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  1. 2020
  2. Published

    The Draft Genome of Red Lechwe, Kobus leche leche

    Wang, B., Wang, Z., Zhou, J., Liu, W., Lin, Z., Zhang, C., Liu, G., Zhou, B., Wan, W., Zhao, R., Wang, W., Heller, Rasmus & Chen, L., 2020, In: Frontiers in Genetics. 11, 7 p., 582638.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Comparative transcriptomic analyses of chlorogenic acid and luteolosides biosynthesis pathways at different flowering stages of diploid and tetraploid Lonicera japonica

    Wang, H., Li, Y., Wang, S., Kong, D., Sahu, S. K., Bai, M., Li, H., Li, L., Xu, Y., Liang, H., Liu, Huan & Wu, H., 2020, In: PeerJ. 8, 24 p., e8690.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    863 genomes reveal the origin and domestication of chicken

    Wang, M. S., Thakur, M., Peng, M-S., Jiang, Y., Frantz, L. A. F., Li, M., Zhang, J-J., Wang, S., Peters, J., Otecko, N. O., Suwannapoom, C., Guo, X., Zheng, Z-Q., Esmailizadeh, A., Hirimuthugoda, N. Y., Ashari, H., Suladari, S., Zein, M. S. A., Kusza, S., Sohrabi, S. & 37 others, Kharrati-Koopaee, H., Shen, Q., Zeng, L., Yang, M., Wu, Y., Yang, X., Lu, X., Jia, X., Nie, Q., Lamont, S. J., Lasagna, E., Ceccobelli, S., Gunwardana, H. G. T. N., Senasige, T. M., Feng, S., Si, J., Zhang, H., Jin, J., Li, M., Liu, Y., Chen, H., Ma, C., Dai, S., Bhuiyan, A. K. F. H., Khan, M. S., Silva, G. L. L. P., Le, T., Mwai, O. A., Ibrahim, M. N. M., Supple, M., Shapiro, B., Hanotte, O., KU, thw266, Larson, G., Han, J., Wu, D. & Zhang, Y., 2020, In: Cell Research. 30, 8, p. 693-701 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain

    Wang, M., Liu, Y., Wen, T., Liu, W., Gao, Q., Zhao, J., Xiong, Z., Wang, Z., Jiang, W., Yu, Y., Wu, L., Yuan, Y., Wei, X., Xu, J., Cheng, M., Zhang, P., Li, P., Hou, Y., Yang, H., Zhang, G. & 3 others, Li, Q., Liu, C. & Liu, L., 2020, In: Scientific Data. 7, 10 p., 217.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Genomes of early-diverging streptophyte algae shed light on plant terrestrialization

    Wang, S., Li, L., Li, H., Sahu, S. K., Wang, H., Xu, Y., Xian, W., Song, B., Liang, H., Cheng, S., Chang, Y., Song, Y., Çebi, Z., Wittek, S., Reder, T., Peterson, M., Yang, H., Wang, J., Melkonian, B., Van de Peer, Y. & 5 others, Xu, X., Wong, G. K., Melkonian, M., Liu, Huan & Liu, X., 2020, In: Nature Plants. 6, 2, p. 95-106

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Seven-year dynamics of testate amoeba communities driven more by stochastic than deterministic processes in two subtropical reservoirs

    Wang, W., Ren, K., Chen, H., Gao, X., Rønn, Regin & Yang, J., 2020, In: Water Research. 185, 11 p., 116232.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Bionic 3D printed corals

    Wangpraseurt, D., You, S., Azam, F., Jacucci, G., Gaidarenko, O., Hildebrand, M., Kühl, Michael, Smith, A. G., Davey, M. P., Smith, A., Deheyn, D. D., Chen, S. & Vignolini, S., 2020, In: Nature Communications. 11, 8 p., 1748.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The extracellular juncture domains in the intimin passenger adopt a constitutively extended conformation inducing restraints to its sphere of action

    Weikum, J., Kulakova, A., Tesei, Giulio, Yoshimoto, S., Jægerum, L. V., Schütz, M., Hori, K., Skepö, M., Harris, Pernille, Leo, J. C. & Morth, J. P., 2020, In: Scientific Reports. 10, 18 p., 21249.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Hyena paleogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena

    Westbury, Michael Vincent, Hartmann, S., Barlow, A., Preick, M., Ridush, B., Nagel, D., Rathgeber, T., Ziegler, R., Baryshnikov, G., Sheng, G., Ludwig, A., Wiesel, I., Dalen, L., Bibi, F., Werdelin, L., Heller, Rasmus & Hofreiter, M., 2020, In: Science Advances. 6, 11, 11 p., eaay0456.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Biogenic Volatile Organic Compounds in Arctic Soil: A Field Study of Concentrations and Variability With Vegetation Cover

    Larsen, Lærke Wester, Kramshøj, M., Albers, C. N. & Rinnan, Riikka, 2020, In: Journal of Geophysical Research: Biogeosciences. 125, 7, 15 p., e2019JG005551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Annelida (excluding Clitellata and Oligochaeta)

    Worsaae, Katrine, 2020, Guide to the Identification of Marine Meiofauna. Schmidt-Rhaesa, A. (ed.). Verlag Dr. Friedrich Pfeil, p. 239-270

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    The neuromuscular system of the cyclostome bryozoan Crisia eburnea (Linnaeus, 1758)

    Worsaae, Katrine, Frykman, T. & Nielsen, Claus, 2020, In: Acta Zoologica. 101, 2, p. 133-146

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A Two-Layered Targeting Mechanism Underlies Nuclear RNA Sorting by the Human Exosome

    Wu, G., Schmid, M., Rib, Leonor, Polak, P., Meola, N., Sandelin, Albin Gustav & Jensen, T. H., 2020, In: Cell Reports. 30, 7, p. 2387-2401, e1-e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The RNA exosome shapes the expression of key protein-coding genes

    Wu, M., Karadoulama, Evdoxia, Lloret-llinares, M., Rouviere, J. O., Vaagensø, C. S., Moravec, M., Li, B., Wang, J., Wu, G., Gockert, M. A. M., Pelechano, V., Jensen, T. H. & Sandelin, Albin Gustav, 2020, In: Nucleic Acids Research. 48, 15, p. 8509-8528

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis

    Wu, S., Nguyen, T. T. T. N., Moroz, O. V., Turkenburg, J. P., Nielsen, J. E., Wilson, K. S., Rand, Kasper Dyrberg & Teilum, Kaare, 2020, In: PeerJ. 8, 17 p., e9408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Noninvasive prenatal paternity testing by maternal plasma DNA sequencing in twin pregnancies

    Xie, Y., Qu, N., Lin, S., Jiang, H., Zhang, Y., Zhang, X., Liang, H., Chen, F. & Ou, X., 2020, In: Electrophoresis. 41, 12, p. 1095-1102

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Distinct nutritional and endocrine regulation of prothoracic gland activities underlies divergent life history strategies in Manduca sexta and Drosophila melanogaster

    Xu, L. C., Nunes, C., Wang, V. R., Saito, A., Chen, T., Basak, P., Chang, J. J., Koyama, Takashi & Suzuki, Y., 2020, In: Insect Biochemistry and Molecular Biology. 119, 13 p., 103335.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Life cycles of the rhizocephalan Boschmaella japonica Deichmann & Høeg, 1990 (Cirripedia: Chthamalophilidae) and its host barnacle Chthamalus challengeri Hoek, 1883 (Cirripedia: Chthamalidae)

    Yabuta, M., Høeg, Jens Thorvald, Yamato, S. & Yusa, Y., 2020, In: Journal of Crustacean Biology. 40, 6, p. 825-832 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    A draft genome assembly of spotted hyena, Crocuta crocuta

    Yang, C., Li, F., Xiong, Z., Koepfli, K., Ryder, O., Perelman, P., Li, Q. & KU, thw266, 2020, In: Scientific Data. 7, 10 p., 126.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Assessment of fecal DNA extraction protocols for metagenomic studies

    Yang, F., Sun, J., Luo, H., Ren, H., Zhou, H., Lin, Y., Han, Mo, Chen, B., Liao, H., Brix, S., Li, J., Yang, H., Kristiansen, Karsten & Zhong, H., 2020, In: GigaScience. 9, 7, 12 p., giaa071.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Prophage-Related Gene VpaChn25_0724 Contributes to Cell Membrane Integrity and Growth of Vibrio parahaemolyticus CHN25

    Yang, L., Wang, Y., Yu, P., Ren, S., Zhu, Z., Jin, Y., Yan, J., Peng, Xu & Chen, L., 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 18 p., 595709.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo

    Yang, M., Woolfenden, H. C., Zhang, Y., Fang, X., Liu, Q., Vigh, Maria Louisa, Cheema, J., Yang, X., Norris, M., Yu, S., Carbonell, A., Brodersen, Peter, Wang, J. & Ding, Y., 2020, In: Nucleic Acids Research. 48, 15, p. 8767-8781 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Cancer Cell Acid Adaptation Gene Expression Response is Correlated to Tumor-Specific Tissue Expression Profiles and Patient Survival

    Yao, Jiayi, Czaplinska, D., Ialchina, Renata, Schnipper, J., Liu, B., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2020, In: Cancers. 12, 8, 27 p., 2183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites

    Yim, B., Baumann, A., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Zühlke, S., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Horticulture Research. 7, 16 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The draft genome of mandrill (Mandrillus sphinx): an Old World monkey

    Yin, Y., Yang, T., Liu, Huan, Huang, Z., Zhang, Y., Song, Y., Wang, W., Guang, X., Sahu, S. K. & Kristiansen, Karsten, 2020, In: Scientific Reports. 10, 8 p., 2431.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Haplotyping by CRISPR-mediated DNA circularization (CRISPR-hapC) broadens allele-specific gene editing

    Yu, J., Xiang, X., Huang, J., Liang, X., Pan, X., Dong, Z., Petersen, T. S., Qu, K., Yang, L., Zhao, X., Li, S., Zheng, T., Xu, Z., Liu, C., Han, P., Xu, F., Yang, H., Liu, X., Zhang, X., Bolund, L. & 2 others, Luo, Y. & Lin, L., 2020, In: Nucleic Acids Research. 48, 5, 13 p., e25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Sponge symbiosis is facilitated by adaptive evolution of larval sensory and attachment structures in barnacles

    Yu, M., Dreyer, N., Kolbasov, G. A., Høeg, Jens Thorvald & Chan, B. K. K., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1927, 9 p., 20200300.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Mixed-species biofilms in the food industry: current knowledge and novel control strategies

    Yuan, L., Hansen, Mads Frederik, Røder, Henriette Lyng, Wang, N., Burmølle, Mette & He, G., 2020, In: Critical Reviews in Food Science and Nutrition. 60, 13, p. 2277-2293

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus

    Zadel, U., Nesme, Joseph, Michalke, B., Vestergaard, G., Płaza, G. A., Schröder, P., Radl, V. & Schloter, M., 2020, In: Science of the Total Environment. 711, 10 p., 134433.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Bezlotoxumab for prevention of Clostridium difficile infection recurrence: Distinguishing relapse from reinfection with whole genome sequencing

    Zeng, Z., Zhao, Hailong, Dorr, M. B., Shen, J., Wilcox, M. H., Poxton, I. R., Guris, D., Li, J. & Shaw, P. M., 2020, In: Anaerobe. 61, 6 p., 102137.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands

    Zethof, J. H. T., Bettermann, A., Vogel, C., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Woche, S. K., Sørensen, Søren Johannes, Smalla, K. & Kalbitz, K., 2020, In: Frontiers in Environmental Science. 8, 19 p., 51.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    STEEP mediates STING ER exit and activation of signaling

    Zhang, B., Nandakumar, R., Reinert, L. S., Huang, J., Laustsen, A., Gao, Z., Sun, C., Jensen, S. B., Troldborg, A., Assil, S., Berthelsen, M. F., Scavenius, C., Zhang, Y., Windross, S. J., Olagnier, D., Prabakaran, T., Chiranjeevi, B., Narita, R., Cai, Y., Zhang, C. & 11 others, Stenmark, H., Doucet, C. M., Noda, T., Guo, Z., Goldbach-Mansky, R., Hartmann, R., Chen, Z. J., Enghild, J. J., Bak, R. O., Thomsen, M. K. & Paludan, S. R., 2020, In: Nature Immunology. 21, 8, p. 868-+ 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species

    Zhang, P., Zhao, Y., Li, C., Lin, M., Dong, L., Zhang, R., Liu, M., Li, K., Zhang, H., Liu, X., Zhang, Y., Yuan, Y., Liu, H., Seim, I., Sun, S., Du, X., Chang, Y., Li, F., Liu, S., Lee, S. M. Y. & 13 others, Wang, K., Wang, D., Wang, X., McGowen, M. R., Jefferson, T. A., Olsen, Morten Tange, Stiller, Josefin, KU, thw266, Xu, X., Yang, H., Fan, G., Liu, X. & Li, S., 2020, In: iScience. 23, 10, 52 p., 101640.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    PIRD: Pan Immune Repertoire Database

    Zhang, W., Wang, L., Liu, K., Wei, X., Yang, K., Du, W., Wang, S., Guo, N., Ma, C., Luo, L., Wu, J., Lin, L., Yang, F., Gao, F., Wang, X., Li, T., Zhang, R., Saksena, N. K., Yang, H., Wang, J. & 4 others, Fang, L., Hou, Y., Xu, X. & Liu, X., 2020, In: Bioinformatics. 36, 3, p. 897-903 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles

    Zhang, Yong, Chen, Y., Xu, H., Fang, J., Zhao, Z., Hu, W., Yang, X., Ye, J., Cheng, Y., Wang, J., Sun, W., Wang, J., Yang, H., Yan, J. & Fang, L., 2020, In: BMC Bioinformatics. 21, 9 p., 295.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Comparative transcriptome studies reveal mitochondrial role in lung cancer classification and mechanism in cancer-resistant species: Transcriptomics studies on cancer-resistant species

    Zhao, J., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    Reply to: Transformation of naked mole-rat cells

    Zhao, J., Tian, X., Zhu, Y., Zhang, Z., Rydkina, E., Yuan, Y., Zhang, H., Roy, B., Cornwell, A., Nevo, E., Shang, X., Huang, R., Kristiansen, Karsten, Seluanov, A., Fang, X. & Gorbunova, V., 2020, In: Nature. 583, 7814, p. E8-E13

    Research output: Contribution to journal › Letter › Research › peer-review

  39. Published

    A Membrane-Associated DHH-DHHA1 Nuclease Degrades Type III CRISPR Second Messenger

    Zhao, R., Yang, Y., Zheng, F., Zeng, Z., Feng, W., Jin, X., Wang, J., Yang, K., Liang, Y. X., She, Q. & Han, W., 2020, In: Cell Reports. 32, 11, 16 p., 108133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Engineering of phi29 DNA polymerase with elevated thermostability and replication activity

    Zheng, Y., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    The origin of domestication genes in goats

    Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., Wang, Y., Liu, J., Cai, Y., Chen, Q., Okpeku, M., Colli, L., Cai, D., Wang, K., Huang, S., Sonstegard, T. S. & 16 others, Esmailizadeh, A., Zhang, W., Zhang, T., Xu, Y., Xu, N., Yang, Y., Han, J., Chen, L., Lesur, J., Daly, K. G., Bradley, D. G., Heller, Rasmus, KU, thw266, Wang, W., Chen, Y. & Jiang, Y., 2020, In: Science Advances. 6, 21, eaaz5216.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Multi-omics association studies on type 2 diabetes

    Zhong, H., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Maternal and paternal contribution to the development of human preimplantation embryos

    Zhou, Q., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  44. Published

    Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds

    Zhu, C., Miller, M., Lusskin, N., Bergk Pinto, B., Maccario, Lorrie, Häggblom, M., Vogel, T., Larose, C. & Bromberg, Y., 2020, In: MicrobiologyOpen. 9, 9, e1100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Metagenome-wide association of gut microbiome features for schizophrenia

    Zhu, F., Ju, Y., Wang, W., Wang, Q., Guo, R., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Feng, J., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Nature Communications. 11, 10 p., 1612.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice

    Zhu, F., Guo, R., Wang, W., Ju, Y., Wang, Q., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Liu, B., Guo, L., He, X., Chen, Y., Chen, C. & 10 others, Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Molecular Psychiatry. 25, 11, p. 2905-2918 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Comparative Proteomics and Secretomics Revealed Virulence and Antibiotic Resistance-Associated Factors in Vibrio parahaemolyticus Recovered From Commonly Consumed Aquatic Products

    Zhu, Z., Yang, L., Yu, P., Wang, Y., Peng, Xu & Chen, L., 2020, In: Frontiers in Microbiology. 11, 31 p., 1453.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Effect of caloric restriction on BMI, gut microbiota, and blood amino acid levels in non-obese adults

    Zou, H., Wang, D., Ren, H., Cai, K., Chen, P., Fang, Chao, Shi, Z., Zhang, P., Wang, J., Yang, H. & Zhong, H., 2020, In: Nutrients. 12, 3, 15 p., 631.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases

    Zou, M., Jie, Z., Cui, B., Wang, H., Feng, Q., Zou, Y., Zhang, X., Yang, H., Wang, J., Zhang, F. & Jia, H., 2020, In: FEBS Open Bio. 10, 1, p. 41-55

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Free Energy Profile and Kinetics of Coupled Folding and Binding of the Intrinsically Disordered Protein p53 with MDM2

    Zou, R., Zhou, Y., Wang, Y., Kuang, G., Ågren, H., Wu, J. & Tu, Y., 2020, In: Journal of Chemical Information and Modeling. 60, 3, p. 1551-1558 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    The evolutionary history of extinct and living lions

    de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Electronic monitoring in fisheries: lessons from global experiences and future opportunities

    van Helmond, A. T. M., Mortensen, L. O., Plet-Hansen, K. S., Ulrich, C., Needle, C. L., Oesterwind, D., Kindt-Larsen, L., Catchpole, T., Mangi, S., Zimmermann, C., Olesen, H. J., Bailey, N., Bergsson, H., Dalskov, J., Elson, J., Hosken, M., Peterson, L., McElderry, H., Ruiz, J., Pierre, J. P. & 2 others, Dykstra, C. & Poos, J. J., 2020, In: Fish and Fisheries. 21, 1, p. 162-189

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Nitrogen Fixation in a Changing Arctic Ocean: An Overlooked Source of Nitrogen?

    Winberg von Friesen, Lisa & Riemann, Lasse, 2020, In: Frontiers in Microbiology. 11, 9 p., 596426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Ecophysiology with barley eceriferum (cer) mutants: the effects of humidity and wax crystal structure on yield and vegetative parameters

    von Wettstein, Penny, 2020, In: Annals of Botany. 126, 2, p. 301-313 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. 2021
  57. Published

    Commercially available kelp and seaweed products – valuable iodine source or risk of excess intake?

    Aakre, I., Solli, D. D., Markhus, M. W., Mæhre, H. K., Dahl, L., Henjum, S., Alexander, J., Korneliussen, P., Madsen, L. & Kjellevold, M., 2021, In: Food & Nutrition Research. 65, 17 p., 7584.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Molekylære stavefejl

    Abildgaard, A. B., Winther, Jakob R., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 28 Jan 2021, In: Weekendavisen, Ideer.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  59. Published

    VM i molekylære puslespil

    Abildgaard, A. B., Winther, Jakob R., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 16 Apr 2021, In: Weekendavisen: Ideer. 15, p. 11

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  60. Published

    Charge Engineering Reveals the Roles of Ionizable Side Chains in Electrospray Ionization Mass Spectrometry

    Abramsson, M. L., Sahin, C., Hopper, J. T. S., Branca, R. M. M., Danielsson, J., Xu, M., Chandler, S. A., Österlund, N., Ilag, L. L., Leppert, A., Costeira-Paulo, J., Lang, L., Teilum, K., Laganowsky, A., Benesch, J. L. P., Oliveberg, M., Robinson, C. V., Marklund, E. G., Allison, T. M., Winther, J. R. & 1 others, Landreh, M., 2021, In: JACS Au. 1, 12, p. 2385-2393 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Hairs distinguish castes and sexes: identifying the early ontogenetic building blocks of a fungus-farming superorganism (Hymenoptera: Formicidae)

    Adams, R. M. M., Larsen, Rasmus Stenbak, Stylianidi, N., Cheung, D., Qiu, Bitao, Murray, S. K., KU, thw266 & Boomsma, Jacobus J., 2021, In: Myrmecological News. 31, p. 201-216 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    COVID-19 drug practices risk antimicrobial resistance evolution

    MetaSUB Consortium, M. C., 2021, In: The Lancet Microbe. 2, 4, p. e135-e136

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  63. Published

    Circulating Free Fatty Acid and Phospholipid Signature Predicts Early Rapid Kidney Function Decline in Patients With Type 1 Diabetes

    Afshinnia, F., Rajendiran, T. M., He, C., Byun, J., Montemayor, D., Darshi, M., Tumova, J., Kim, J., Limonte, C. P., Miller, R. G., Costacou, T., Orchard, T. J., Ahluwalia, Tarun Veer Singh, Rossing, Peter, Snell-Bergeon, J. K., de Boer, I. H., Natarajan, L., Michailidis, G., Sharma, K. & Pennathur, S., 2021, In: Diabetes Care. 44, 9, p. 2098-2106 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Potent Inhibitor of Human Trypsins from the Aeruginosin Family of Natural Products

    Ahmed, M. N., Wahlsten, M., Jokela, J., Nees, M., Stenman, U., Alvarenga, Danillo Oliveira, Strandin, T., Sivonen, K., Poso, A., Permi, P., Metsä-Ketelä, M., Koistinen, H. & Fewer, D. P., 2021, In: ACS chemical biology. 16, 11, p. 2537–2546 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Refinement of α-Synuclein Ensembles Against SAXS Data: Comparison of Force Fields and Methods

    Ahmed, M. C., Skaanning, L. K., Jussupow, A., Newcombe, Estella Anne, Kragelund, Birthe Brandt, Camilloni, C., Langkilde, Annette Eva & Lindorff-Larsen, Kresten, 2021, In: Frontiers in Molecular Biosciences. 8, 13 p., 654333.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Macroecology of macrophytes in the freshwater realm: Patterns, mechanisms and implications

    Alahuhta, J., Lindholm, M., Båstrup-Spohr, Lars, García-Girón, J., Toivanen, M., Heino, J. & Murphy, K., 2021, In: Aquatic Botany. 168, 10 p., 103325.

    Research output: Contribution to journal › Review › Research › peer-review

  67. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Calmodulin downregulation in conditional knockout HeLa cells inhibits cell migration

    Alcalde, J., Munk, M., González-Muñoz, M., Panina, S., Berchtold, Martin Werner & Villalobo, A., 2021, In: Archives of Biochemistry and Biophysics. 697, 9 p., 108680.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Immune challenges increase network centrality in a queenless ant

    Alciatore, G., Ugelvig, Line Vej, Frank, E., Bidaux, J., Gal, A., Schmitt, T., Kronauer, D. J. C. & Ulrich, Y., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1958, 9 p., 20211456.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Divergent expression of hypoxia response systems under deoxygenation in reef-forming corals aligns with bleaching susceptibility

    Alderdice, R., Suggett, D. J., Cárdenas, A., Hughes, D. J., Kühl, Michael, Pernice, M. & Voolstra, C. R., 2021, In: Global Change Biology. 27, 2, p. 312-326 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Genome editing in archaeal viruses and endogenous viral protein purification

    Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Muscular adaptations in swimming scale worms (Polynoidae, Annelida)

    Allentoft-Larsen, M. C., Gonzalez, B. C., Daniels, J., Katija, K., Osborn, K. & Worsaae, Katrine, 2021, In: Royal Society Open Science. 8, 10, 22 p., 210541.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Limits to the cellular control of sequestered cryptophyte prey in the marine ciliate Mesodinium rubrum: [incl. correction]

    Altenburger, A., Cai, H., Li, Q., Drumm, Kirstine, Kim, M., Zhu, Y., Garcia-Cuetos, L., Zhan, X., Hansen, Per Juel, John, U., Li, S. & Lundholm, Nina, 2021, In: The ISME Journal. 15, 4, p. 1056-1072 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Indirect effects of climate change inhibit N2 fixation associated with the feathermoss Hylocomium splendens in subarctic tundra

    Alvarenga, Danillo Oliveira & Rousk, Kathrin, 2021, In: Science of the Total Environment. 795, 7 p., 148676.

    Research output: Contribution to journal › Letter › Research › peer-review

  75. Published

    Amazonocrinis nigriterrae gen. nov., sp. nov., Atlanticothrix silvestris gen. nov., sp. nov. and Dendronalium phyllosphericum gen. nov., sp. nov., nostocacean cyanobacteria from Brazilian environments

    Alvarenga, Danillo Oliveira, Andreote, A. P. D., Branco, L. H. Z., Delbaje, E., Cruz, R. B., Varani, A. D. M. & Fiore, M. F., 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 5, 12 p., 004811.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    High-throughput screening alternative to crystal violet biofilm assay combining fluorescence quantification and imaging

    Amador Hierro, Cristina Isabel, Stannius, R. O., Røder, Henriette Lyng & Burmølle, Mette, 2021, In: Journal of Microbiological Methods. 190, 5 p., 106343.

    Research output: Contribution to journal › Letter › Research › peer-review

  77. Published

    A complex of BRCA2 and PP2A-B56 is required for DNA repair by homologous recombination

    Ambjørn, Sara Marie, Duxin, Julien, Hertz, Emil Peter Thrane, Nasa, I., Duro, Joana Maria, Kruse, Thomas, Lopez-Mendez, B., Rymarczyk, B., Cressey, L. E., van Overeem Hansen, T., Kettenbach, A. N., Østergaard, Vibe Hallundbæk, Lisby, Michael & Nilsson, Jakob, 2021, In: Nature Communications. 12, 1, 11 p., 5748.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Systems-wide effects of short-term feed deprivation in obese mice

    Andersen, D., Roager, Henrik Munch, Zhang, L., Moll, J. M., Frandsen, H. L., Danneskiold-Samsøe, Niels Banhos, Hansen, Axel Kornerup, Kristiansen, Karsten, Licht, T. R. & Brix, Susanne, 2021, In: Scientific Reports. 11, 11 p., 5716.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Metabolic reprogramming by driver mutation-tumor microenvironment interplay in pancreatic cancer: new therapeutic targets

    Andersen, Henriette Berg, Ialchina, Renata, Pedersen, Stine Helene Falsig & Czaplinska, D., 2021, In: Cancer and Metastasis Reviews. 40, 4, p. 1093-1114 22 p.

    Research output: Contribution to journal › Review › Research › peer-review

  80. Published

    Functional Feeding Groups of Macrofauna and Detritus Decomposition along a Gradient of Glacial Meltwater Influence in Tropical High-Andean Streams

    Andino, P., Espinosa, R., Crespo-Pérez, V., Cauvy-Fraunié, S., Dangles, O. & Jacobsen, Dean, 2021, In: Water. 13, 22, 16 p., 3303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

    Andrade, P., Gazda, M. A., Araújo, P. M., Afonso, S., Rasmussen, Jacob Agerbo, Marques, C. I., Lopes, R. J., Gilbert, M Thomas P & Carneiro, M., 2021, In: PLOS Genetics. 17, 2, 16 p., 1009404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles

    Andreu-Sánchez, S., Chen, W., Stiller, Josefin & KU, thw266, 2021, In: GigaScience. 10, 1, 11 p., giaa161.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Polyketide synthase genes and molecular trade-offs in the ichthyotoxic species Prymnesium parvum

    Anestis, K., Kohli, G. S., Wohlrab, S., Varga, E., Larsen, T. O., Hansen, Per Juel & John, U., 2021, In: Science of the Total Environment. 795, 10 p., 148878.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Substitutional landscape of a split fluorescent protein fragment using high-density peptide microarrays

    Antonescu, O. N., Rasmussen, A., Damm, N. A. M., Heidemann, Ditte Fogh, Popov, R., Nesterov-Mueller, A., Johansson, Kristoffer Enøe & Winther, Jakob R., 2021, In: PLoS ONE. 16, 2, 17 p., e0241461.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Diversity and Evolution of Entomocorticium (Russulales, Peniophoraceae), a Genus of Bark Beetle Mutualists Derived from Free-Living, Wood Rotting Peniophora

    Araújo, J. P. M., Li, Y., Six, D., Rajchenberg, M., Smith, M. E., Johnson, A. J., Klepzig, K. D., Crous, P. W., A. Leal-Dutra, Caio, Skelton, J., Adams, S. N. & Hulcr, J., 2021, In: Journal of Fungi. 7, 12, 26 p., 1043.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Metabolomics unveils the influence of dietary phytochemicals on residual pesticide concentrations in honey bees

    Ardalani, H., Vidkjær, Nanna Hjort, Kryger, P., Fiehn, O. & Fomsgaard, I. S., 2021, In: Environment International. 152, 10 p., 106503.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Small Intestinal Tuft Cell Activity Associates With Energy Metabolism in Diet-Induced Obesity

    Arora, P., Andersen, D., Moll, J. M., Danneskiold-Samsøe, Niels Banhos, Xu, L., Zhou, B., Kladis, G., Rausch, P., Workman, C. T., Kristiansen, Karsten & Brix, S., 2021, In: Frontiers in Immunology. 12, 13 p., 629391.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Isolation, characterization, and genome assembly of Barnettozyma botsteinii sp. nov. and novel strains of Kurtzmaniella quercitrusa isolated from the intestinal tract of the termite Macrotermes bellicosus

    Arrey Tané, Gerard, Li, G., Murphy, Rob, Guimaraes, L., Alizadeh, S., Poulsen, Michael & Regenberg, Birgitte, 2021, In: G3: Genes, Genomes, Genetics. 11, 12, 13 p., jkab342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

    Arribas Hernandez, Laura, Rennie, Sarah, Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, Robin & Brodersen, Peter, 2021, In: eLife. 10, 33 p., e72375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

    Arribas Hernandez, Laura, Rennie, Sarah, Schon, M., Porcelli, C., Enugutti, B., Andersson, Robin, Nodine, M. D. & Brodersen, Peter, 2021, In: eLife. 10, 27 p., e72377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Juvenile hormone pathway in honey bee larvae: A source of possible signal molecules for the reproductive behavior of Varroa destructor

    Aurori, C. M., Giurgiu, A. I., Conlon, B. H., Kastally, C., Dezmirean, D. S., Routtu, J. & Aurori, A., 2021, In: Ecology and Evolution. 11, 2, p. 1057-1068 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Topoisomerase II deficiency leads to a postreplicative structural shift in all Saccharomyces cerevisiae chromosomes

    Ayra-Plasencia, J., Ramos-Pérez, C., Santana-Sosa, S., Quevedo, O., Medina-Suárez, S., Matos-Perdomo, E., Zamora-Dorta, M., Brown, G. W., Lisby, Michael & Machín, F., 2021, In: Scientific Reports. 11, 16 p., 14940.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Mercury bioaccumulation pathways in tusk (Brosme brosme) from Sognefjord, Norway: Insights from C and N isotopes

    Azad, A. M., Frantzen, S., Bank, M. S., Madsen, L. & Maage, A., 2021, In: Environmental Pollution. 269, 10 p., 115997.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Functions of TopBP1 in preserving genome integrity during mitosis

    Bagge, J., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2021, In: Seminars in Cell and Developmental Biology. 113, p. 57-64 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  96. Published

    Phenological stage of tundra vegetation controls bidirectional exchange of BVOCs in a climate change experiment on a subarctic heath

    Baggesen, N., Li, Tao, Seco, Roger, Holst, T., Michelsen, Anders & Rinnan, Riikka, 2021, In: Global Change Biology. 27, 12, p. 2928-2944 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Bidirectional exchange of biogenic volatile organic compounds between subarctic heath tundra and the atmosphere

    Baggesen, N. S., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 202 p.

    Research output: Book/Report › Ph.D. thesis › Research

  98. Published

    Detecting bird’s eggs in the diet of raccoon dog (Nyctereutes procyonoides)

    Bahlke, S. Ø., Nash, David Richard, Pedersen, Jes Søe, Hansen, Mette Sif, Chriél, M. & Pagh, S., 2021, In: Genetics and Biodiversity Journal. 5, 2, p. 127-139 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Bending during seedling emergence: Mechanochemical insight

    Bai, B., 2021, In: Trends in Plant Science. 26, 9, p. 879-881 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  100. Published

    Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

    Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, Joseph, Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Monsters in the dark: systematics and biogeography of the stygobitic genus Godzillius (Crustacea: Remipedia) from the Lucayan Archipelago

    Ballou, L., Iliffe, T. M., Kakuk, B., Gonzalez, B. C., Osborn, K. J., Worsaae, Katrine, Meland, K., Broad, K., Bracken-Grissom, H. & Olesen, Jørgen, 2021, In: European Journal of Taxonomy. 751, p. 115-139 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil

    Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.

    Research output: Contribution to journal › Journal article › Research › peer-review

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