Department of Biology

 

 
  1. 2023
  2. Published

    Limited genetic variations of the Rh5-CyRPA-Ripr invasion complex in Plasmodium falciparum parasite population in selected malaria-endemic regions, Kenya

    Waweru, H., Kanoi, B. N., Kuja, J. O., Maranga, M., Kongere, J., Maina, M., Kinyua, J. & Gitaka, J., 2023, In: Frontiers in Tropical Diseases. 4, 9 p., 1102265.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland

    Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, Kirsten Seestern & Jeppesen, E., 2023, In: Frontiers in Ecology and Evolution. 11, 15 p., 1177638.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

    Weng, Z., Ruan, F., Chen, W., Chen, Z., Xie, Y., Luo, M., Xie, Z., Zhang, C., Wang, J., Sun, Y., Fang, Y., Guo, M., Tan, C., Chen, W., Tong, Y., Li, Y., Wang, H. & Tang, C., 2023, In: Genome Biology. 24, 1, 29 p., 61.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

    Wenger, Alice, Biran, Alva Ada, Alcaraz, N., Redó-Riveiro, A., Sell, Annika Charlotte, Krautz, Robert, Flury, Valentin, Reveron-Gomez, Nazaret, Solis-Mezarino, V., Völker-Albert, M., Imhof, A., Andersson, Robin, Brickman, Joshua Mark & Groth, Anja, 2023, In: Nature Genetics. 55, 9, p. 1567-1578 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Impact of Holocene environmental change on the evolutionary ecology of an Arctic top predator

    Westbury, Michael Vincent, Brown, S. C., Lorenzen, J., O'Neill, S., Scott, M. B., McCuaig, J., Cheung, C., Armstrong, E., Valdes, P. J., Castruita, J. A. S., Cabrera, Andrea A., Blom, Stine Keibel, Dietz, R., Sonne, C., Louis, Marie Georgette Yolande J, Galatius, A., Fordham, D. A., dos Santos Ribeiro, Sofia Isabel, Szpak, P. & Lorenzen, Eline, 2023, In: Science Advances. 9, 45, 12 p., eadf3326.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Unique horizontal gaze control in the box jellyfish, Tripedalia cystophora

    Wiisbye, S. H. & Garm, Anders Lydik, 2023, In: Vision Research. 203, 8 p., 108159.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Pelagic Nitrogen Fixation and Diazotrophs in the Eurasian Arctic Ocean: A Missing Piece of the Arctic Nitrogen Puzzle

    Winberg von Friesen, Lisa, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 192 p.

    Research output: Book/ReportPh.D. thesisResearch

  9. Published

    Editorial: Long-read sequencing—Pitfalls, benefits and success stories

    Wohlers, I., Garg, S. & Hehir-Kwa, J. Y., 2023, In: Frontiers in Genetics. 13, 3 p., 1114542.

    Research output: Contribution to journalEditorialResearchpeer-review

  10. Published

    Evolution of Bilateria from a Meiofauna Perspective—Miniaturization in the Focus

    Worsaae, Katrine, Vinther, J. & Sørensen, Martin Vinther, 2023, New Horizons in Meiobenthos Research: Profiles, Patterns and Potentials. 1 ed. Springer, Cham, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearch

  11. Published

    Cooperative microbial interactions drive spatial segregation in porous environments

    Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Next Generation Sequencing Library Preparation Technologies and Applications

    Wu, Zongze, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/ReportPh.D. thesisResearch

  13. Published

    When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli

    Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Global dispersal and adaptive evolution of domestic cattle: a genomic perspective

    Xia, X., Qu, K., Wang, Y., Sinding, Mikkel Holger Strander, Wang, F., Hanif, Q., Ahmed, Z., Lenstra, J. A., Han, J., Lei, C. & Chen, N., 2023, In: Stress Biology. 3, 1, 13 p., 8.

    Research output: Contribution to journalReviewResearchpeer-review

  15. Published

    Identification and functional analysis of circulating extrachromosomal circular DNA in schizophrenia implicate its negative effect on the disorder

    Xiang, X., Pan, Xiaoguang, Lv, W., Chen, S., Li, J., Zhang, H., Liao, Y., Yu, J., Li, J., Dang, Y., You, Z., Wang, L., Chen, W., Han, Peng & Tang, J., 2023, In: Clinical and Translational Medicine. 13, 11, 7 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  16. Published

    ERK and USP5 govern PD-1 homeostasis via deubiquitination to modulate tumor immunotherapy

    Xiao, X., Shi, J., He, C., Bu, X., Sun, Y., Gao, M., Xiang, B., Xiong, W., Dai, P., Mao, Q., Xing, X., Yao, Y., Yu, H., Xu, G., Li, S., Ren, Y., Chen, B., Jiang, C., Meng, G., Lee, Y. R. & 4 others, Wei, W., Freeman, G. J., Xie, C. & Zhang, J., 2023, In: Nature Communications. 14, 1, 19 p., 2859.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Novel tRNA Gene Rearrangements in the Mitochondrial Genomes of Poneroid Ants and Phylogenetic Implication of Paraponerinae (Hymenoptera: Formicidae)

    Xiong, Z., He, Ding, Guang, X. & Li, Q., 2023, In: Life. 13, 10, 17 p., 2068.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    The Discovery of Anti-defense Genes in Archaea

    Xu, Shuanshuan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/ReportPh.D. thesisResearch

  19. Published

    Deepened snow in combination with summer warming increases growing season nitrous oxide emissions in dry tundra, but not in wet tundra

    Xu, W., Frendrup, L. L., Michelsen, Anders, Elberling, Bo & Ambus, Per Lennart, 2023, In: Soil Biology and Biochemistry. 180, 12 p., 109013.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Global beta-diversity of angiosperm trees is shaped by Quaternary climate change

    Xu, W. B., Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Enquist, B. J., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A. & 39 others, Dias, A. S., Giroldo, A. B., Gutiérrez, A. G., Hattingh, W., He, T., Hietz, P., Hough-Snee, N., Jansen, S., Kattge, J., Komac, B., Kraft, N. J. B., Kramer, K., Lavorel, S., Lusk, C. H., Martin, A. R., Ma, K. P., Mencuccini, M., Michaletz, S. T., Minden, V., Mori, A. S., Niinemets, Ü., Onoda, Y., Onstein, R. E., Peñuelas, J., Pillar, V. D., Pisek, J., Pound, M. J., Robroek, B. J. M., Schamp, B., Slot, M., Sun, M., Sosinski, Ê. E., Soudzilovskaia, N. A., Thiffault, N., van Bodegom, P. M., van der Plas, F., Zheng, J., Svenning, J. C. & Ordonez, A., 2023, In: Science Advances. 9, 14, 19 p., eadd8553.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance

    Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.

    Research output: Book/ReportPh.D. thesisResearch

  22. Published

    Surprising leopard restoration in fragmented ecosystems reveals connections as the secret to conservation success

    Yanwen, F., Guojing, Z., Wenqian, D., Yue, W., Jiawei, L., Mengyu, T., Yan, L., Haoran, L., Bing, X., Xiao, J., Enyu, F., Lulu, Z., Jian, C., Lei, Y., Chenghao, W., Yongfeng, C., Guoqiang, C., Yong, Z., Kezi, L., Haitao, Y. & 4 others, Xuemei, H., Jianping, G., Jun, Z. & Limin, F., 2023, In: Science of the Total Environment. 858, 8 p., 159790.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    The combined effect of pH and dissolved inorganic carbon concentrations on the physiology of plastidic ciliate Mesodinium rubrum and its cryptophyte prey

    Yde Eriksen, C. S., Desmaret Walli, M., Van de Waal, D. B., Helmsing, N. R., Dahl, E. O., Sørensen, Helle & Hansen, Per Juel, 2023, In: Harmful Algae. 129, 11 p., 102509.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Genetic architecture of spatial electrical biomarkers for cardiac arrhythmia and relationship with cardiovascular disease

    Young, W. J., Haessler, J., Benjamins, J-W., Repetto, L., Yao, J., Isaacs, A., Harper, A. R., Ramirez, J., Garnier, S., van Duijvenboden, S., Baldassari, A. R., Concas, M. P., Duong, T., Foco, L., Isaksen, J. L., Mei, H., Noordam, R., Nursyifa, C., Richmond, A., Santolalla, M. L. & 74 others, Sitlani, C. M., Soroush, N., Thériault, S., Trompet, S., Aeschbacher, S., Ahmadizar, F., Alonso, A., Brody, J. A., Campbell, A., Correa, A., Darbar, D., De Luca, A., Deleuze, J., Ellervik, Christina, Fuchsberger, C., Goel, A., Grace, C., Guo, X., Hansen, Torben, Heckbert, S. R., Jackson, R. D., Kors, J. A., Lima-Costa, M. F., Linneberg, Allan René, Macfarlane, P. W., Morrison, A. C., Navarro, P., Porteous, D. J., Pramstaller, P. P., Reiner, A. P., Risch, L., Schotten, U., Shen, X., Sinagra, G., Soliman, E. Z., Stoll, M., Tarazona-Santos, E., Tinker, A., Trajanoska, K., Villard, E., Warren, H. R., Whitsel, E. A., Wiggins, K. L., Arking, D. E., Avery, C. L., Conen, D., Girotto, G., Grarup, Niels, Hayward, C., Jukema, J. W., Mook-Kanamori, D. O., Olesen, Morten Steen Salling, Padmanabhan, S., Psaty, B. M., Pattaro, C., Ribeiro, A. L. P., Rotter, J. I., Stricker, B. H., van der Harst, P., van Duijn, C. M., Verweij, N., Wilson, J. G., Orini, M., Charron, P., Watkins, H., Kooperberg, C., Lin, H. J., Wilson, J. F., Kanters, Jørgen K., Sotoodehnia, N., Mifsud, B., Lambiase, P. D., Tereshchenko, L. G. & Munroe, P. B., 14 Mar 2023, In: Nature Communications. 14, 1, 16 p., 1411.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Human epidermal growth factor receptor 2 status in urothelial bladder carcinoma: Frequency, genomic patterns and clinical significance

    Yu, T., Tao, H., Lv, W., Liang, N., Cui, X., Sui, X., Pan, Y., Wu, S., Xiang, C., Li, Y., Zeng, Y., Li, Conghui, Wang, F., Han, Peng, Wang, W., Yu, G. & Lin, C., 2023, In: Clinical and Translational Discovery. 3, 5, 4 p., e245.

    Research output: Contribution to journalComment/debateResearchpeer-review

  26. Published

    Warming, permafrost thaw and increased nitrogen availability as drivers for plant composition and growth across the Tibetan Plateau

    Yun, Hanbo, Zhu, Q., Tang, Jing, Zhang, W., Chen, D., Ciais, P., Wu, Q. & Elberling, Bo, 2023, In: Soil Biology and Biochemistry. 182, 9 p., 109041.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Development and validation of a minimally invasive and image-guided tape stripping method to sample atopic skin in children

    Yélamos, O., Andersen, D., Pont, M., Iglesias, P., Potrony, M., Domínguez, M., Herrero, A., Alejo, B., Mateu, J., Røpke, Mads Almose, Danneskiold-Samsøe, Niels Banhos, Malvehy, J., Guy, R. H., Brix, S. & Puig, S., 2023, In: Clinical and Experimental Dermatology. 48, 2, p. 80-88 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Unraveling the genetic basis of neurological diseases and thalassemia: the clinical utility of high throughput sequencing

    ZHANG, W., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/ReportPh.D. thesisResearch

  29. Published

    Development and application of new bioinformatic tools for large-scale population genomic study

    ZHANG, YONG, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 103 p.

    Research output: Book/ReportPh.D. thesisResearch

  30. Published

    Cultivation and sequencing of commensal bacteria of the human gut through culture-based and metagenomics analyses

    ZOU, Y., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/ReportPh.D. thesisResearch

  31. Published

    Quantification of gene copy numbers is valuable in marine microbial ecology: a comment to Meiler et al. (2022).

    Zehr, J. P. & Riemann, Lasse, 2023, In: Limnology and Oceanography. 68, 6, 7 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  32. Published

    Comparative genomics reveals the hybrid origin of a macaque group

    Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, Roos, C., Qi, X. G., Li, M., Liu, Z., Schierup, M. H., Cooper, D. N., Liu, J., Zheng, Y. T., KU, thw266 & Wu, D. D., 2023, In: Science Advances. 9, 22, 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力

    Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    On the origin and evolution of RNA editing in metazoans

    Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma

    Zhang, R., Feng, Y., Ma, W., Guo, Y., Luo, M., Li, Y., Zang, Y., Dong, X., Lu, S., Guo, Q., Xu, Q., Chen, H., Li, Y., Liu, L., CHEN, Ao, Chen, G. & Xu, X., 2023, In: Fundamental Research. 3, 4, 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment

    Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization

    Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, Yang, H., Wang, J., Seim, I. & Fan, G., 2023, In: Nature Communications. 14, 1, 15 p., 5630.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Metagenome-Genome wide association studies for analysis of complex diseases

    Zhang, T., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 39 p.

    Research output: Book/ReportPh.D. thesisResearch

  39. Published

    Sea animal colonies enhance carbonyl sulfide emissions from coastal Antarctic tundra

    Zhang, W., Zhu, R., Jiao, Yi, Rhew, R. C., Sun, B., Rinnan, Riikka & Zhou, Z., 2023, In: Communications Earth and Environment. 4, 1, 11 p., 326.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

    Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Recent decrease of the impact of tropical temperature on the carbon cycle linked to increased precipitation

    Zhang, Wenmin, Schurgers, Guy, Peñuelas, J., Fensholt, Rasmus, Yang, H., Tang, Jing, Tong, Xiaowei, Ciais, P. & Brandt, Martin Stefan, 2023, In: Nature Communications. 14, 1, 9 p., 965.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report

    Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification

    Zhang, Z., Duan, C., Liu, Y., Li, A., Hu, X., Chen, J., Zhang, S., Li, X., Che, R., Li, S., Ekelund, Flemming & Cui, X., 2023, In: Bioresource Technology. 380, 10 p., 129014.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Next generation sequencing facilitates the mining of genomic information in a clinical pathogen (Clostridium difficile) and the viromes of wildlife bats and rodents

    Zhao, Hailong, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 127 p.

    Research output: Book/ReportPh.D. thesisResearch

  45. Published

    The effect of experimental warming on fine root functional traits of woody plants: Data synthesis

    Zhao, X., Tian, Q., Michelsen, Anders, Lu, M., Ren, B., Huang, L. & Zhao, R., 2023, In: Science of the Total Environment. 894, 9 p., 165003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    The effects of mycorrhizal associations on fine root decomposition in temperate and (sub)tropical forests

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Zhao, R., Yuan, X., Chen, L., Zuo, J. & Liu, F., 2023, In: Plant and Soil. 487, 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations

    Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Expression of genes and enzymes involved in ovarian steroidogenesis in relation to human follicular development

    Zheng, M., tcg964, tcg964, Rasmussen, F. R., Cadenas, J., Christensen, Søren Tvorup & Mamsen, L. S., 2023, In: Frontiers in Endocrinology. 14, 17 p., 1268248.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Eighty million years of rapid evolution of the primate Y chromosome

    Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, Wu, D. D., Schierup, M. H. & KU, thw266, 2023, In: Nature Ecology and Evolution. 7, 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

    Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

    de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Variation of extrachromosomal circular DNA in cancer cell lines

    dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Geochemical landscapes as drivers of wildlife reproductive success: Insights from a high-Arctic ecosystem

    van Beest, F. M., Schmidt, N. M., Stewart, L., Hansen, L. H., Michelsen, Anders, Mosbacher, J. B., Gilbert, H., Le Roux, G. & Hansson, S. V., 2023, In: Science of the Total Environment. 903, 12 p., 166567.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Deciphering regulatory mechanisms underlying gene co-activity

    van Duin, Lucas, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/ReportPh.D. thesisResearch

  55. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis

    von Eyben, F. E., Kristiansen, Karsten, Kapp, D. S., Hu, R., Preda, O. & Nogales, F. F., 2023, In: International Journal of Molecular Sciences. 24, 4, 28 p., 4148.

    Research output: Contribution to journalReviewResearchpeer-review

  57. Published

    Glacial meltwater and seasonality influence community composition of diazotrophs in Arctic coastal and open waters

    Winberg von Friesen, Lisa, Paulsen, M. L., Müller, O., Gründger, F. & Riemann, Lasse, 2023, In: F E M S Microbiology Ecology. 99, 8, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Integrative taxonomy of Central European Planetella (Diptera: Cecidomyiidae) indicates high species diversity, intraspecific variation and low host specificity

    Ševčík, J., Hippa, H., Burdíková, N., Sopuch, K., Skuhravá, M. & Bruun, Hans Henrik, 2023, In: Acta Entomologica Musei Nationalis Pragae. 63, 2, p. 413-450 38 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. 2022
  60. Published

    The mechanisms behind degradation of misfolded proteins

    Abildgaard, A. B., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/ReportPh.D. thesisResearch

  61. Published

    The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

    Afgan, E., Nekrutenko, A., Grüning, B. A., Blankenberg, D., Goecks, J., Schatz, M. C., Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., Desanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B. A. & 85 others, Langhorst, B. W., Carr, B., Raubenolt, B. A., Hyde, C. J., Bromhead, C. J., Barnett, C. B., Royaux, C., Gallardo, C., Blankenberg, D., Fornika, D. J., Baker, D., Bouvier, D., Clements, D., De Lima Morais, D. A., Tabernero, D. L., Lariviere, D., Nasr, E., Afgan, E., Zambelli, F., Heyl, F., Psomopoulos, F., Coppens, F., Price, G. R., Cuccuru, G., Corguillé, G. L., Von Kuster, G., Akbulut, G. G., Rasche, H., Hans-Rudolf, H., Eguinoa, I., Makunin, I., Ranawaka, I. J., Taylor, J. P., Joshi, J., Hillman-Jackson, J., Chilton, J. M., Kamali, K., Suderman, K., Poterlowicz, K., Yvan, L. B., Lopez-Delisle, L., Sargent, L., Bassetti, M. E., Tangaro, M. A., Van Den Beek, M., Cech, M., Bernt, M., Fahrner, M., Tekman, M., Föll, M. C., Schatz, M. C., Crusoe, M. R., Roncoroni, M., Kucher, N., Coraor, N., Stoler, N., Rhodes, N., Soranzo, N., Pinter, N., Goonasekera, N. A., Moreno, P. A., Videm, P., Melanie, P., Mandreoli, P., Jagtap, P. D., Gu, Q., Weber, R. J. M., Lazarus, R., Vorderman, R. H. P., Hiltemann, S., Golitsynskiy, S., Garg, S., Bray, S. A., Gladman, S. L., Leo, S., Mehta, S. P., Griffin, T. J., Jalili, V., Yves, V., Wen, V., Nagampalli, V. K., Bacon, W. A., De Koning, W., Maier, W. & Briggs, P. J., 2022, In: Nucleic Acids Research. 50, W1, p. W345-W351 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Telomeric C-circles localize at nuclear pore complexes in Saccharomyces cerevisiae

    Aguilera, P., Dubarry, M., Hardy, J., Lisby, Michael, Simon, M. & Géli, V., 2022, In: EMBO Journal. 41, 6, 14 p., e108736.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Tripartite Symbiotic Digestion of Lignocellulose in the Digestive System of a Fungus-Growing Termite

    Ahmad, F., Yang, G., Zhu, Y., Poulsen, Michael, Li, W., Yu, T. & Mo, J., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e01234-22.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems

    Ahmerkamp, S., Jalaluddin, F. M., Cui, Y., Brumley, D. R., Pacherres, Cesar, Berg, J. S., Stocker, R., Kuypers, M. M. M., Koren, K. & Behrendt, L., 2022, In: Cell Reports Methods. 2, 5, 18 p., 100216.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    A structural biology community assessment of AlphaFold2 applications

    Akdel, M., Pires, D. E., Porta Pardo, E., Jänes, J., Zalevsky, A. O., Meszaros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., Shenoy, A., Zhu, W., Kundrotas, P., Serra, V. R., Rodrigues, C. H. M., Dunham, A. S., Burke, D., Borkakoti, N., Velankar, S., Frost, A. & 14 others, Basquin, J., Lindorff-Larsen, Kresten, Bateman, A., Kajava, A., Valencia, A., Ovchinnikov, S., Durairaj, J., Ascher, D. B., Thornton, J. M., Davey, N. E., Stein, Amelie, Elofsson, A., Croll, T. & Beltrao, P., 2022, In: Nature Structural & Molecular Biology. 29, 11, 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Methods for fighting emerging pathogens

    Alcantara, L. C. J., Amenga-Etego, L., Andersson, Robin, Bhaumik, M., Choi, Y. K., Decaluwe, H., Geoghegan, J., Haagmans, B. L., López, S., Mukhtar, M. M., Nelwan, E., Rahal, E. A., Sato, K., Sklan, E. H. & Fang, Y. S. C., 2022, In: Nature Methods. 19, 4, p. 395-397 3 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  68. Published

    Deoxygenation lowers the thermal threshold of coral bleaching: [Inkl. Correction]

    Alderdice, R., Perna, G., Cárdenas, A., Hume, B. C. C., Wolf, M., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Scientific Reports. 12, 14 p., 18273.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience

    Alderdice, R., Hume, B. C. C., Kühl, Michael, Pernice, M., Suggett, D. J. & Voolstra, C. R., 2022, In: Frontiers in Marine Science. 9, 14 p., 834332.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    Hypoxia as a physiological cue and pathological stress for coral larvae

    Alderdice, R., Pernice, M., Cárdenas, A., Hughes, D. J., Harrison, P. L., Boulotte, N., Chartrand, K., Kühl, Michael, Suggett, D. J. & Voolstra, C. R., 2022, In: Molecular Ecology. 31, 2, p. 571-587 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    A family of conserved bacterial virulence factors dampens interferon responses by blocking calcium signaling

    Alphonse, N., Wanford, J. J., Voak, A. A., Gay, J., Venkhaya, S., Burroughs, O., Mathew, S., Lee, T., Evans, S. L., Zhao, W., Frowde, K., Alrehaili, A., Dickenson, R. E., Munk, M., Panina, S., Mahmood, I. F., Llorian, M., Stanifer, M. L., Boulant, S., Berchtold, M. W. & 4 others, Bergeron, J. R. C., Wack, A., Lesser, C. F. & Odendall, C., 2022, In: Cell. 185, 13, p. 2354-2369.e17

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Unraveling host - microbe interactions and ecosystem functions in moss-bacteria symbioses

    Alvarenga, Danillo Oliveira & Rousk, Kathrin, 2022, In: Journal of Experimental Botany. 73, 13, p. 4473–4486 14 p.

    Research output: Contribution to journalReviewResearchpeer-review

  73. Published

    An adipose lncRAP2-Igf2bp2 complex enhances adipogenesis and energy expenditure by stabilizing target mRNAs

    Alvarez-Dominguez, J. R., Winther, Sally, Hansen, Jacob B., Lodish, H. F. & Knoll, M., 2022, In: iScience. 25, 1, 25 p., 103680.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Ecdysone coordinates plastic growth with robust pattern in the developing wing

    Alves, A. N., Oliveira, M. M., Koyama, Takashi, Shingleton, A. & Mirth, C. K., Mar 2022, In: eLife. 11, 24 p., e72666.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    C-locked analogs of the antimicrobial peptide BP214

    Andersen, I. K. L., Thomsen, T. T., Rashid, J., Bobak, T. R., Oddo, A., Franzyk, Henrik, Løbner-Olesen, Anders & Hansen, Paul Robert, 2022, In: Antibiotics. 11, 8, 10 p., 1080.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Loss of sucrase-isomaltase function increases acetate levels and improves metabolic health in Greenlandic cohorts

    Andersen, M. K., Skotte, L., Jørsboe, E., Polito, R., Stæger, F. F., Aldiss, P., Hanghøj, K., Waples, R. K., Santander, C. G., Grarup, N., Dahl-Petersen, I. K., Diaz, L. J., Overvad, M., Senftleber, N. K., Søborg, B., Larsen, C. V. L., Lemoine, C., Pedersen, O., Feenstra, B., Bjerregaard, P. & 9 others, Melbye, M., Jørgensen, M. E., Færgeman, N. J., Koch, A., Moritz, Thomas, Gillum, M. P., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2022, In: Gastroenterology. 162, 4, p. 1171-1182.e3

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Patterns of free amino acids in tundra soils reflect mycorrhizal type, shrubification, and warming

    Andresen, L. C., Bodé, S., Björk, R. G., Michelsen, Anders, Aerts, R., Boeckx, P., Cornelissen, J. H. C., Klanderud, K., van Logtestijn, R. S. P. & Rütting, T., 2022, In: Mycorrhiza. 32, 3-4, p. 305-313 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights

    Andrew DeWoody, J., Jeon, J. Y., Bickham, J. W., Heenkenda, E. J., Janjua, S., Lamka, G. F., Mularo, A. J., Black, A., Brüniche-Olsen, Anna & Willoughby, J. R., 2022, In: PNAS. 119, 35, 2 p., e2210685119.

    Research output: Contribution to journalLetterResearchpeer-review

  79. Published

    Germin like protein genes exhibit modular expression during salt and drought stress in elite rice cultivars

    Anum, J., O'Shea, Charlotte, Hyder, M. Z., Farrukh, S., Skriver, Karen, Malik, S. I. & Yasmin, T., 2022, In: Molecular Biology Reports. 49, 1, p. 293-302 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Sodium, Glucose and Dysregulated Glucagon Secretion: The Potential of Sodium Glucose Transporters

    Armour, Sarah Louise, Früh, Alexander Erwin & Knudsen, Jakob Grunnet, 2022, In: Frontiers in Pharmacology. 13, 6 p., 837664.

    Research output: Contribution to journalReviewResearchpeer-review

  81. Published

    A unifying model for extrachromosomal circular DNA load in eukaryotic cells

    Arrey Tané, Gerard, Keating, S. T. & Regenberg, Birgitte, 2022, In: Seminars in Cell and Developmental Biology. 128, p. 40-50 11 p.

    Research output: Contribution to journalReviewResearchpeer-review

  82. Published

    The rebellious circles: Phenotypic consequences of circular DNAs in eukaryotic genomes

    Arrey Tané, Gerard, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 200 p.

    Research output: Book/ReportPh.D. thesisResearch

  83. Published

    A DNA barcode survey of insect biodiversity in Pakistan

    Ashfaq, M., Khan, A. M., Rasool, A., Akhtar, S., Nazir, N., Ahmed, N., Manzoor, F., Sones, J., Perez, K., Sarwar, G., Khan, A. A., Akhter, M., Saeed, S., Sultana, R., Tahir, H. M., Rafi, M. A., Iftikhar, R., Naseem, M. T., Masood, M., Tufail, M. & 8 others, Kumar, S., Afzal, S., McKeown, J., Samejo, A. A., Khaliq, I., D'Souza, M. L., Mansoor, S. & Hebert, P. D. N., 2022, In: PeerJ. 10, 19 p., e13267.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Unexpected diversity among small-scale sample replicates of defined plant root compartments

    Attia, S., Russel, J., Mortensen, M. S., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    A Comparative Analysis of Weizmannia coagulans Genomes Unravels the Genetic Potential for Biotechnological Applications

    Aulitto, M., Martinez Alvarez, Laura, Fiorentino, G., Limauro, D., Peng, Xu & Contursi, P., 2022, In: International Journal of Molecular Sciences . 23, 6, 23 p., 3135.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Genomics, Transcriptomics, and Proteomics of SSV1 and Related Fusellovirus: A Minireview

    Aulitto, M., Martinez Alvarez, Laura, Fusco, S., She, Q., Bartolucci, S., Peng, Xu & Contursi, P., 2022, In: Viruses. 14, 10, 18 p., 2082.

    Research output: Contribution to journalReviewResearchpeer-review

  87. Published

    Naturpligt skal sikre mere og vildere natur i Danmark

    Baaner, Lasse, Bruun, Hans Henrik, Vejre, Henrik, Møller, Peter Rask, Båstrup-Spohr, Lars, Krøijer, Stine, Larsen, K. C., Kjøller, Rasmus, Strange, Niels, Jepsen, Martin Rudbeck & Heilmann-Clausen, Jacob, 3 Jun 2022, Altinget.dk.

    Research output: Other contributionNet publication - Internet publicationCommunication

  88. Published

    Stream restoration and ecosystem functioning in lowland streams

    Baattrup-Pedersen, A., Alnoe, A. B., Rasmussen, J. J., Levi, P. S., Friberg, N. & Riis, T., 2022, In: Ecological Engineering. 184, 9 p., 106782.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Investigating the value of immersive virtual reality tools for organizational training: An applied international study in the biotech industry

    Baceviciute, S., Cordoba, A. L., Wismer, P., Jensen, T. V., Klausen, M. & Makransky, Guido, Apr 2022, In: Journal of Computer Assisted Learning. 38, 2, p. 470-487

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Sperm Storage Costs Determine Survival and Immunocompetence in Newly Mated Queens of the Leaf-Cutting Ant Atta colombica

    Baer-Imhoof, B., Beckers, Susanne den Boer, Boomsma, Jacobus J. & Baer, B., 2022, In: Frontiers in Ecology and Evolution. 9, 10 p., 759183.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    Bidirectional Exchange of Biogenic Volatile Organic Compounds in Subarctic Heath Mesocosms During Autumn Climate Scenarios

    Baggesen, N. S., Davie-Martin, Cleo Lisa, Seco, Roger, Holst, T. & Rinnan, Riikka, 2022, In: Journal of Geophysical Research: Biogeosciences. 127, 6, 20 p., e2021JG006688.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    An update on principles of m6A targeting

    Bai, B., 2022, In: Trends in Plant Science. 27, 3, p. 224-226 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

    Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Paracetamol Use During Pregnancy - A Call for Precautionary Action

    Bauer, A. Z., Swan, S. H., Kriebel, D., Liew, Z., Taylor, H. S., Bornehag, C., Andrade, A. M., Olsen, J., Jensen, Rigmor Højland, Mitchell, R. T., Skakkebæk, Niels Erik, Jégou, B. & Kristensen, D. M., 2022, In: Obstetrical and Gynecological Survey. 77, 3, p. 133-134 2 p.

    Research output: Contribution to journalReviewResearchpeer-review

  95. Published

    Reply to ‘Paracetamol use in pregnancy — caution over causal inference from available data’; ‘Handle with care — interpretation, synthesis and dissemination of data on paracetamol in pregnancy’

    Bauer, A. Z., Swan, S. H., Kriebel, D., Liew, Z., Taylor, H. S., Bornehag, C., M. Andrade, A., Olsen, J., Jensen, Rigmor Højland, Mitchell, R. T., Skakkebæk, Niels Erik & Kristensen, D. M., 2022, In: Nature Reviews Endocrinology. 18, 3, p. 192 1 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  96. Published

    Reply to ‘Paracetamol use in pregnancy — neglecting context promotes misinterpretation’

    Bauer, A. Z., Swan, S. H., Kriebel, D., Liew, Z., Taylor, H. S., Bornehag, C., Andrade, A. M., Olsen, J., Jensen, Rigmor Højland, Mitchell, R. T., Skakkebæk, Niels Erik & Kristensen, D. M., 2022, In: Nature Reviews Endocrinology. 18, 1 p., 386.

    Research output: Contribution to journalLetterResearchpeer-review

  97. Published

    Possible Functional Roles of Patellamides in the Ascidian-Prochloron Symbiosis

    Baur, P., Kühl, Michael, Comba, P. & Behrendt, L., 2022, In: Marine Drugs. 20, 2, 20 p., 119.

    Research output: Contribution to journalReviewResearchpeer-review

  98. Published

    Guidelines for evaluating the conservation value of African lion (Panthera leo) translocations

    Becker, M. S., Almeida, J., Begg, C., Bertola, L., Breitenmoser, C., Breitenmoser, U., Coals, P., Funston, P., Gaylard, A., Groom, R., Henschel, P., Ikanda, D., Jorge, A., Kruger, J., Lindsey, P., Maimbo, H., Mandisodza-Chikerema, R., Maude, G., Mbizah, M., Miller, S. M. & 17 others, Mudongo, E., Mwape, H., Mweetwa, T., Naude, V., Nyirenda, V. R., Parker, A., Parker, D., Reid, C., Robson, A., Sayer, E., Selier, S. J., Sichande, M., Simukonda, C., Uiseb, K., Williams, V. L., Zimba, D. & Hunter, L., 2022, In: Frontiers in Conservation Science. 3, 13 p., 963961.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    LPJ-GUESS/LSMv1.0: a next-generation land surface model with high ecological realism

    Belda, D. M., Anthoni, P., Wårlind, D., Olin, S., Schurgers, Guy, Tang, Jing, Smith, B. & Arneth, A., 2022, In: Geoscientific Model Development. 15, 17, p. 6709-6745 37 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Sinking Trichodesmium fixes nitrogen in the dark ocean

    Benavides, M., Bonnet, S., Le Moigne, F. A. C., Armin, G., Inomura, K., Hallstrøm, S., Riemann, Lasse, Berman-Frank, I., Poletti, E., Garel, M., Grosso, O., Leblanc, K., Guigue, C., Tedetti, M. & Dupouy, C., 2022, In: The ISME Journal. 16, 10, p. 2398-2405 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published

    The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates

    Bergeron, Lucie Adrienne, Besenbacher, S., Turner, T. N., Versoza, C. J., Wang, R. J., Price, A. L., Armstrong, E., Riera, M., Carlson, J., Chen, Hwei-Yen, Hahn, M. W., Harris, K., Kleppe, A. S., López-Nandam, E. H., Moorjani, P., Pfeifer, S. P., Tiley, G. P., Yoder, A. D., KU, thw266 & Schierup, M. H., 2022, In: eLife. 11, 28 p., e73577.

    Research output: Contribution to journalJournal articleResearchpeer-review

  102. Published

    Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments

    Bergonzo, C., Grishaev, A. & Bottaro, S., 2022, In: RNA. 28, 7, p. 937-946 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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