Department of Biology

 

 
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  1. Published

    A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

    Davis, J. I., Stevenson, D. W., Petersen, G., Seberg, Ole, Campbell, L. M., Freudenstein, J. V., Goldman, D. H., Hardy, C. R., Michelangeli, F. A., Simmons, M. P., Specht, C. D., Vergara-Silva, F. & Gandolfo, M., 2004, In: Systematic Botany. 29, 3, p. 467-510

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A Potential Tool for Swift Fox (Vulpes velox) Conservation: Individuality of Long-Range Barking Sequences

    Darden, S. K., Dabelsteen, Torben & Pedersen, S. B., 2003, In: Journal of Mammalogy. 84, 4, p. 1417-1427

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A Probabilistic Programming Approach to Protein Structure Superposition

    Sanz Moreta, Lys, Al-Sibahi, A. S., Theobald, D., Bullock, W., Rommes, B. N., Manoukian, Andreas & Hamelryck, Thomas Wim, 2019, 2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2019. Baruzzo, G., Daberdaku, S., Di Camillo, B., Furini, S., Giordano, E. D. & Nicosia, G. (eds.). IEEE, 5 p. 8791469

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  4. Published

    A Proposal for an Elyms-core Collection

    Seberg, Ole, 1997, In: Plant Genetic Resources Newsletter. 111, p. 77-81

    Research output: Contribution to journal › Journal article › Research

  5. Published

    A Quantitative Framework for the Thylacine-Canid Comparison: Integrating Development, Morphology, Genomics and Evolutionary History

    Hipsley, Christy Anna, Jun 2019, p. S61-S61. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  6. Published

    A Redescription of Balanion comatum Wulff, 1919 (Prorodontida, Ciliophora) with Notes on its Cultivation and Behaviour

    Jakobsen, H. H. & Montagnes, D. J. S., 1999, In: J.Eukariot.Microbiol.. 46(2), p. 198-205

    Research output: Contribution to journal › Journal article › Research

  7. Published

    A Relationship between the Characteristics of the Oval Nucleus of the Mesopallium and Parrot Vocal Response to Playback

    Walløe, S., Chakraborty, M., Balsby, T. J. S., Jarvis, E. D., Dabelsteen, Torben & Pakkenberg, B., 2021, In: Brain, Behavior and Evolution. 96, 1, p. 37-48 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

    Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, Leise, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5949-5956

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A Roundtable on the Skjern River Delta and New Narratives in Nature Restoration: A Swampy and Impenetrable Landscape with Unpredictable Natural Dynamics

    Bruun, Hans Henrik, Ejrnæs, R., Brunbjerg, A. K., Larsen, R. E., Dalgas, G. S. & Carstensen, J. S., 2023, Critical Coast. Arkitektens Forlag, 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication

  10. Published

    A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees

    Nielsen, Rasmus, Bustamente, C., Clark, A. G., Glanowski, S., Sackton, T. B., Hubisz, M. J., Fledel-Alon, A., Tanenbaum, D. M., Civello, D., White, T. J., Sninsky, J. J., Adams, M. D. & Cargill, M., 2005, In: PLoS - Biology. 3, 6, p. e170

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A Screen Identifies the Oncogenic Micro-RNA miR-378a-5p as a Negative Regulator of Oncogene-Induced Senescence

    Kooistra, S. M., Rudkjær, L. C., Lees, M. J., Steinhauer, C., Johansen, Jens Vilstrup & Helin, K., 2014, In: PLOS ONE. 9, 3, p. 1-7 7 p., e91034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A Serial Analysis of Gene Expression (SAGE) Database Analysis of Chemosensitivity: Comparing Solid Tumors with Cell Lines and Comparing Solid Tumors from Different Tissue Origins: comparing solid tumors with cell lines and comparing solid tumors from different tissue origins

    Stein, W. D., Litman, Thomas, Fojo, T. & Bates, S. E., 15 Apr 2004, In: Cancer Research. 64, 8, p. 2805-2816 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    A Sex-Linked Enzyme Polymorphism in the Marine Isopod Jaera ischiosetosa

    Siegismund, Hans Redlef & Christensen, B., 1992, In: Journal of Heredity. 83, 5, p. 388-392

    Research output: Contribution to journal › Comment/debate › Research

  14. Published

    A Shift from Reflex Habituation to Potentiation With Increased Stimulus Strength of the Tentacle in Helix Pomatia is Traced to a Synaptic Shift from Depression to Facilitation.

    Nielsen, L. E., Schilhab, T., Christoffersen, G. R. J. & Olsen, J., 1994, In: Europ. J. of Neuroscience. Suppl. 7, p. 1

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A Simple and Safe Device for Spreading Ultrathin Sections with Chloroform

    Edén, U. M. & Olson, L., 1993, In: Biotechnic & histochemistry. 68 (2), p. 1

    Research output: Contribution to journal › Journal article › Research

  16. Published

    A Sleeping Beauty DNA transposon-based genetic sensor for functional screening of vitamin D3 analogues

    Staunstrup, N. H., Sharma, N., Bak, R. O., Svensson, L., Petersen, T. K., Aarenstrup, L., Kristiansen, Karsten, Bolund, L. & Mikkelsen, J. G., 2011, In: B M C Biotechnology. 11, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A Study of the Morphology and Biology of Thompsonia littoralis (Crustacea: Cirripedia: Rhizocephala)

    Lützen, J. & Jespersen, Å., 1992, In: Acta Zoologica. 73, 1, p. 1-23 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A Targeted Multiomics Approach to Identify Biomarkers Associated with Rapid eGFR Decline in Type 1 Diabetes

    Limonte, C. P., Valo, E., Montemayor, D., Afshinnia, F., Ahluwalia, T. S., Costacou, T., Darshi, M., Forsblom, C., Hoofnagle, A. N., Groop, P-H., Miller, R. G., Orchard, T. J., Pennathur, S., Rossing, P., Sandholm, N., Snell-Bergeon, J. K., Ye, H., Zhang, J., Natarajan, L., De Boer, I. H. & 1 others, Sharma, K., 2020, In: American Journal of Nephrology. 51, 10, p. 839-848 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A Two-Layered Targeting Mechanism Underlies Nuclear RNA Sorting by the Human Exosome

    Wu, G., Schmid, M., Rib, Leonor, Polak, P., Meola, N., Sandelin, Albin Gustav & Jensen, T. H., 2020, In: Cell Reports. 30, 7, p. 2387-2401, e1-e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding

    Han, W., Stella, S., Zhang, Y., Guo, T., Sulek, K., Peng-Lundgren, L., Montoya, Guillermo & She, Q., 2018, In: Nucleic Acids Research. 46, 19, p. 10319-10330 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A Unified Nomenclature for Protein Subunits of Mediator Complexes Linking Transcriptional Regulators to RNA Polymerase II

    Bourbon, H. M., Aguilera, A., Ansari, A. Z., Asturias, F. J., Berk, A. J., Bjorklund, S., Blackwell, T. K., Borggrefe, T., Carey, M., Carlson, M., Conaway, J. W., Conaway, R. C., Emmons, S. W., Fondell, J. D., Freedman, L. P., Fukasawa, T., Gustafsson, C. M., Han, M., He, X., Herman, P. K. & 27 others, Hinnebusch, A. G., Holmberg, Steen, Holstege, F. C., Jaehning, J. A., Kim, Y., Kuras, L., Leutz, A., Lis, J. T., Meisterernest, M., Naar, A. M., Nasmyth, K., Parvin, J. D., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, P. W., Stillman, D. J., Strich, R., Struhl, K., Svejstrup, J. Q., Tuck, S., Winston, F., Roeder, R. G. & Kornberg, R. D., 2004, In: Molecular Cell. 14, 5, p. 553-557

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A Unified Resource for Tracking Anti-CRISPR Names

    Bondy-Denomy, J., Davidson, A. R., Doudna, J. A., Fineran, P. C., Maxwell, K. L., Moineau, S., Peng, Xu, Sontheimer, E. J. & Wiedenheft, B., 2018, In: CRISPR Journal. 1, 5, p. 304-305

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  23. Published

    A Visual Guide for Studying Behavioral Defenses to Pathogen Attacks in Leaf-Cutting Ants

    Nilsson-Møller, S., Poulsen, Michael & Innocent, T. M., 2018, In: Journal of visualized experiments : JoVE. 140, p. 1-12

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    A YTHDF–PABP interaction is required for m6A-mediated organogenesis in plants

    Tankmar, Mathias Due, Reichel, M., Arribas Hernandez, Laura & Brodersen, Peter, 2023, In: EMBO Reports. 24, 12, 19 p., e57741.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A backward view from 16S rRNA to archaea to the universal tree of life to progenotes Reminiscences of Carl Woese

    Garrett, Roger Antony, 2014, In: R N A Biology. 11, 3, p. 232-235 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  26. Published

    A bacterial ras-like small GTP-binding protein and its cognate GAP establish a dynamic spatial polarity axis to control directed motility

    ZHANG, YONG, Franco, M., Ducret, A. & Mignot, T., Jul 2010, In: PLOS Biology. 8, 7

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A biogeographical perspective on species abundance distributions: recent advances and opportunities for future research

    Matthews, T. J., Borges, P. A. V., de Azevedo, E. B. & Whittaker, R. J., Aug 2017, In: Journal of Biogeography. 44, 8, p. 1705-1710 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A biography of Einer Steemann Nielsen: the man and his science

    Søndergaard, M., 2002, Phytoplankton productivity - Carbon assimilation in marine and freshwater ecosystems. Oxford: Blackwell Publishing, p. 1-15

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  29. Published

    A biosemiotic approach to the question of meaning

    Hoffmeyer, J., 2010, In: Zygon. 45, 2, p. 367-390 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    A birder's guide to the behaviour of European and North American birds

    Dabelsteen, Torben, 2005, In: Dansk Ornitologisk Forenings Tidsskrift. 99, 3, p. 163-164

    Research output: Contribution to journal › Literature review › Communication

  31. Published

    A bloom of Mallomonas acaroides, a silica-scaled chrysophyte, in the crater pond of a pingo, Northwest Greenland

    Kristiansen, J., Wilken, L. & Jürgensen, T., 1995, In: Polar Biology. 15, p. 319-324

    Research output: Contribution to journal › Journal article › Research

  32. Published

    A bovine in vitro blood-brain barrier model under oxygenglucose deprivation (OGD) condition

    Tornabene, E., Helms, H. C. C., Berndt, P., Blasig, I., Pedersen, Stine Helene Falsig, Waagepetersen, Helle S. & Larsen, Birger Brodin, 2016.

    Research output: Contribution to conference › Poster › Research

  33. E-pub ahead of print

    A brief history of metal recruitment in protozoan predation

    Yu, Y., Li, Y. P., Ren, K., Hao, X., Fru, E. C., Rønn, Regin, Rivera, W. L., Becker, K., Feng, R., Yang, J. & Rensing, C., 2023, (E-pub ahead of print) In: Trends in Microbiology.

    Research output: Contribution to journal › Review › Research › peer-review

  34. Published

    A calcium permeable cation channel activated by membrane stretch and cell swelling in renal a6 and frog skin epithelia.

    Urbach, V., Andersen, H., Hall, J. A. & Harvey, B., 1993, In: Journal of Physiology. 467, p. 273P

    Research output: Contribution to journal › Journal article › Research

  35. Published

    A carbon budget for the Amundsen Sea Polynya, Antarctica: estimating net community production and export in a highly productive polar ecosystem

    Yager, P. L., Sherrell, R. M., Stammerjohn, S. E., Ducklow, H. W., Schofield, O. M. E., Ingall, E. D., Wilson, S. E., Lowry, K. E., Williams, C. M., Riemann, L., Bertilsson, S., Alderkamp, A-C., Dinasquet, J. V., Logares, R., Richert, I., Sipler, R. E., Melara, A. J., Mu, L., Newstead, R. G., Post, A. F. & 2 others, Swalethorp, R. & van Dijken, G. L., 2016, In: Elementa : Science of the Anthropocene. 4, 36 p., 000140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A case of Naegleria fowleri related primary amoebic meningoencephalitis in China diagnosed by next-generation sequencing

    Wang, Q., Li, J., Ji, J., Yang, L., Chen, L., Zhou, R., Yang, Y., Zheng, H., Yuan, J., Li, L., Bi, Y., Gao, G. F., Ma, J. & Liu, Y., 2018, In: BMC Infectious Diseases. 18, 5 p., 349.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A catalog of 48,425 nonredundant viruses from oral metagenomes expands the horizon of the human oral virome

    Li, S., Guo, R., Zhang, Y., Li, P., Chen, F., Wang, X., Li, J., Jie, Zhuye, Lv, Q., Jin, H., Wang, G. & Yan, Q., 2022, In: iScience. 25, 6, 18 p., 104418.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A catalog of bacterial reference genomes from cultivated human oral bacteria

    Li, W., Liang, H., Lin, X., Hu, T., Wu, Z., He, W., Wang, M., Zhang, J., Jie, Zhuye, Jin, X., Xu, X., Wang, J., Yang, H., Zhang, W., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: npj Biofilms and Microbiomes. 9, 1, 13 p., 45.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

    Li, J., Zhong, H., Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estellé, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Yang, F., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X. & 7 others, Yang, H., Wang, J., Madsen, L., Kristiansen, Karsten, Henrissat, B., Ehrlich, S. D. & Morgavi, D. P., 2020, In: GigaScience. 9, 6, 15 p., giaa057.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A catalog of the mouse gut metagenome: [incl. Author Correction]

    Xiao, L., Feng, Q., Liang, S., Sonne, S. B., Xia, Z., Qiu, X., Li, X., Long, H., Zhang, J., Zhang, D., Liu, C., Fang, Z., Chou, J., Glanville, J., Hao, Q., Kotowska, D. E., Colding, C. S., Licht, T. R., Wu, D., Yu, J. & 17 others, Sung, J. J. Y., Liang, Q., Li, J., Jia, H., Lan, Z., Tremaroli, V., Dworzynski, P., Nielsen, H. B., Bäckhed, G. F., Dore, J., Le Chatelier, E., Ehrlich, S. D., Lin, J. C., Arumugam, Mani, Wang, J., Madsen, L. & Kristiansen, Karsten, 2015, In: Nature Biotechnology. 33, 10, p. 1103-1108 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A cell cycle-regulated Slx4-Dpb11 complex promotes the resolution of DNA repair intermediates linked to stalled replication

    Gritenaite, D., Princz, L. N., Szakal, B., Bantele, S. C. S., Wendeler, L., Schilbach, S., Habermann, B. H., Matos, J., Lisby, Michael, Branzei, D. & Pfander, B., 2014, In: Genes & Development. 28, 14, p. 1604-1619 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A cell shrinkage-induced non-selective cation conductance with a novel pharmacology in Ehrlich-Lettre-ascites tumour cells.

    Lawonn, P., Hoffmann, E. K., Hougaard, C. & Wehner, F., 2003, In: FEBS Letters. 539, 1-3, p. 115-9 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A centenary in chrysophyte research: Gunnar Nygaard 1903-2002

    Kristiansen, J. & Kristiansen, J., 2004, In: Memoranda pro Fauna et Flora Fennica. 80, p. 28-29

    Research output: Contribution to journal › Journal article › Research

  44. Published

    A century-long genetic record reveals that protist effective population sizes are comparable to those of macroscopic species

    Watts, P. C., Lundholm, Nina, Ribeiro, S. & Ellegaard, Marianne, 23 Dec 2013, In: Biology Letters. 9, 6, 4 p., 20130849.

    Research output: Contribution to journal › Letter › Research › peer-review

  45. Published

    A chaperone-assisted degradation pathway targets kinetochore proteins to ensure genome stability

    Kriegenburg, F., Jakopec, V., Poulsen, E. G., Nielsen, S. V., Roguev, A., Krogan, N., Gordon, C., Fleig, U. & Hartmann-Petersen, Rasmus, 2014, In: P L o S Genetics. 10, 1, 15 p., e1004140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A check-list of Rhizoctonia epithets

    Andersen, T. F., 1994, In: Mycotaxon. 51, p. 437-457

    Research output: Contribution to journal › Journal article › Research

  47. Published

    A checklist of Danish freshwater chrysophytes. Third edition

    Kristiansen, J., 1991, Danmark: Institut for Sporeplanter, København.

    Research output: Book/Report › Book › Research

  48. Published

    A chemometric analysis of ligand-induced changes in intrinsic fluorescence of folate binding protein indicates a link between altered conformational structure and physico-chemical characteristics

    Bruun, S. W., Holm, J., Hansen, S. I., Andersen, C. M. & Nørgaard, L., 2009, In: Applied Spectroscopy. 63, 12, p. 1315-1322 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics

    Chen, F., Su, L., Hu, S., Xue, J., Liu, H., Liu, G., Jiang, Y., Du, J., Qiao, Y., Fan, Y., Liu, Huan, Yang, Q., Lu, W., Shao, Z., Zhang, J., Zhang, L., Chen, F. & Cheng, Z. (., 2021, In: Horticulture Research. 8, 13 p., 141.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression

    Li, X., Lozano-Madueno, C., Martinez Alvarez, Laura & Peng, Xu, 2023, In: Nucleic acids symposium series. 51, 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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