Functional Genomics

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  1. Published

    Arresting chromosome replication upon energy starvation in Escherichia coli

    Charbon, Godefroid, Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Current Genetics. 67, 6, p. 877-882 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  2. Published

    Countermeasures to survive excessive chromosome replication in Escherichia coli

    Charbon, Godefroid, Riber, Leise & Løbner-Olesen, Anders, 2018, In: Current Genetics. 64, 1, p. 71-79 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis

    Charbon, Godefroid, Breunig, K. D., Wattiez, R., Vandenhaute, J. & Noël-Georis, I., May 2004, In: Molecular and Cellular Biology. 24, 10, p. 4083-91 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein

    Charbon, Godefroid, Mendoza-Chamizo, B., Campion, C., Li, X., Jensen, P. R., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli

    Charbon, Godefroid, Campion, C., Chan, S. H. J., Bjørn, L., Weimann, A., da Silva, L. C. N., Jensen, P. R. & Løbner-Olesen, Anders, 27 Jan 2017, In: PLoS Genetics. 13, 1, 26 p., e1006590.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Counting Replication Origins to Measure Growth of Pathogens

    Charbon, Godefroid, Haugan, M. S., Frimodt-Møller, N. & Løbner-Olesen, Anders, 2020, In: Antibiotics. 9, 5, 5 p., 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Rad52 SUMOylation functions as a molecular switch that determines a balance between the Rad5- and Rad59-dependent survivors

    Charifi, F., Churikov, D., Eckert-Boulet, N., Minguet, C., Jourquin, F., Hardy, J., Lisby, Michael, Simon, M. N. & Géli, V., 2021, In: iScience. 24, 3, 26 p., 102231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Integrity of a heterochromatic domain ensured by its boundary elements

    Charlton, Sebastian Jespersen, Jørgensen, M. M. & Thon, Genevieve, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 35, p. 21504-21511 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing

    Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    (p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium

    Chau, N. Y. E., Pérez-Morales, D., Elhenawy, W., Bustamante, V. H., ZHANG, YONG & Coombes, B. K., 2021, In: Infection and Immunity. 89, 2, 14 p., e00639-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Srs2 promotes Mus81-Mms4-mediated resolution of recombination intermediates

    Chavdarova, M., Marini, V., Sisakova, A., Sedlackova, H., Vigasova, D., Brill, S. J., Lisby, Michael & Krejci, L., 2015, In: Nucleic Acids Research. 43, 7, p. 3626-3642 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

    Chen, A., Liao, S., Cheng, M., Ma, K., Wu, L., Lai, Y., Qiu, X., Yang, J., Xu, J., Hao, S., Wang, X., Lu, H., Chen, X., Liu, X., Huang, X., Li, Z., Hong, Y., Jiang, Y., Peng, J., Liu, S. & 49 others, Shen, M., Liu, C., Li, Q., Yuan, Y., Wei, X., Zheng, H., Feng, W., Wang, Z., Liu, Y., Wang, Z., Yang, Y., Xiang, H., Han, L., Qin, B., Guo, P., Lai, G., Muñoz-Cánoves, P., Maxwell, P. H., Thiery, J. P., Wu, Q., Zhao, F., Chen, B., Li, M., Dai, X., Wang, S., Kuang, H., Hui, J., Wang, L., Fei, J., Wang, O., Wei, X., Lu, H., Wang, B., Liu, S., Gu, Y., Ni, M., Zhang, W., Mu, F., Yin, Y., Yang, H., Lisby, Michael, Cornall, R. J., Mulder, J., Uhlén, M., Esteban, M. A., Li, Y., Liu, L., Xu, X. & Wang, J., 2022, In: Cell. 185, 10, p. 1777-1792.e21

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex

    Chen, A., Sun, Y., Lei, Y., Li, C., Liao, S., Meng, J., Bai, Y., Liu, Z., Liang, Z., Zhu, Z., Yuan, N., Yang, H., Wu, Z., Lin, F., Wang, K., Li, M., Zhang, S., Yang, M., Fei, T., Zhuang, Z. & 85 others, Huang, Y., Zhang, Y., Xu, Y., Cui, L., Zhang, R., Han, L., Sun, X., Chen, B., Li, W., Huangfu, B., Ma, K., Ma, J., Li, Z., Lin, Y., Wang, H., Zhong, Y., Zhang, H., Yu, Q., Wang, Y., Liu, X., Peng, J., Liu, C., Chen, W., Pan, W., An, Y., Xia, S., Lu, Y., Wang, M., Song, X., Liu, S., Wang, Z., Gong, C., Huang, X., Yuan, Y., Zhao, Y., Chai, Q., Tan, X., Liu, J., Zheng, M., Li, S., Huang, Y., Hong, Y., Huang, Z., Li, M., Jin, M., Li, Y., Zhang, H., Sun, S., Gao, L., Bai, Y., Cheng, M., Hu, G., Liu, S., Wang, B., Xiang, B., Li, S., Li, H., Chen, M., Wang, S., Li, M., Liu, W., Liu, X., Zhao, Q., Lisby, Michael, Wang, J., Fang, J., Lin, Y., Xie, Q., He, J., Xu, H., Huang, W., Mulder, J., Yang, H., Sun, Y., Uhlen, M., Poo, M., Wang, J., Yao, J., Wei, W., Li, Y., Shen, Z., Liu, L., Liu, Z., Xu, X. & Li, C., 2023, In: Cell. 186, 17, p. 3726-3743.e24 43 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics

    Chen, F., Su, L., Hu, S., Xue, J., Liu, H., Liu, G., Jiang, Y., Du, J., Qiao, Y., Fan, Y., Liu, Huan, Yang, Q., Lu, W., Shao, Z., Zhang, J., Zhang, L., Chen, F. & Cheng, Z. (., 2021, In: Horticulture Research. 8, 13 p., 141.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    RPA coordinates DNA end resection and prevents formation of DNA hairpins

    Chen, H., Lisby, Michael & Symington, L. S., 2013, In: Molecular Cell. 50, 4, p. 589-600 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. E-pub ahead of print

    International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis

    Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Novel bacterial sulfur oxygenase reductases from bioreactors treating gold-bearing concentrates

    Chen, Z., Liu, Y., Wu, J., She, Q., Jiang, C. & Liu, S., 2007, In: Applied Microbiology and Biotechnology. 74, 3, p. 688-98 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Characterization of pMC11, a plasmid with dual origins of replication isolated from Lactobacillus casei MCJ and construction of shuttle vectors with each replicon

    Chen, Z., Lin, J., Ma, C., Zhao, S., She, Q. & Liang, Y., 2014, In: Applied Microbiology and Biotechnology. 98, 13, p. 5977-5989 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Autophagy mediate cellular reprogramming

    Chevalier, J. R., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics

    Christensen, A. S., Linnet, T. E., Borg, M., Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2013, In: PLoS ONE. 8, 12, 10 p., e84123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Mik1 levels accumulate in S phase and may mediate an intrinsic link between S phase and mitosis

    Christensen, P. U., Bentley, N. J., Martinho, R. G., Nielsen, O., Carr, A. & Nielsen, Olaf, 14 Mar 2000, In: Proceedings of the National Academy of Sciences of the United States of America. 97, 6, p. 2579-84 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Abc1: a new ABC transporter from the fission yeast Schizosaccharomyces pombe

    Christensen, P. U., Davis, K., Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Feb 1997, In: F E M S Microbiology Letters. 147, 1, p. 97-102 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The Schizosaccharomyces pombe mam1 gene encodes an ABC transporter mediating secretion of M-factor

    Christensen, P. U., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Jun 1997, In: Molecular and General Genetics MGG. 255, 2, p. 226-36 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA

    Christiansen, Jan, Kofod, M. & Nielsen, F. C., 1994, In: Nucleic Acids Research. 22, 25, p. 5709-16 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Isolation of a novel protein, P12-from adult Drosophila melanogaster that inhibits deoxyribonucleoside and protein kinase activities and activates 3'-5'-exonuclease activity

    Christiansen, L. S., Zanten, G. V., Berenstein, D., Lauridsen, M., Kjærulff, S., Søndergaard, Leif & Munch-Petersen, B., 2016, In: Nucleosides, Nucleotides and Nucleic Acids. 35, 10-12, p. 699-706 8 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  26. Published

    Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence

    Christiansen, M. W., Matthewman, C., Podzimska-Sroka, D. A., O'Shea, Charlotte, Lindemose, Søren, Møllegaard, Niels Erik, Holme, I. B., Hebelstrup, K., Skriver, Karen & Gregersen, P. L., 2016, In: Journal of Experimental Botany. 67, 17, p. 5259-5273 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    57miRNA regulation during oncogene-induced senescence


    Christoffersen, N. R., Frankel, Lisa, Klausen, M., Jacobsen, A., Krogh, Anders & Lund, Anders H., May 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  28. Published

    SUMO-dependent relocalization of eroded telomeres to nuclear pore complexes controls telomere recombination

    Churikov, D., Charifi, F., Eckert-Boulet, N. V., Pinela da Silva, S. C., Simon, M., Lisby, Michael & Géli, V., 2016, In: Cell Reports. 15, 6, p. 1242-1253 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, Jakob Skou, Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Folliculin variants linked to Birt-Hogg-Dubé syndrome are targeted for proteasomal degradation

    Bjørnkjær, Lene, Stein, Amelie, Grønbæk-Thygesen, Martin, Nygaard, L., Søltoft, C. L., Nielsen, S. V., Lisby, Michael, Ravid, T., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2020, In: PLOS Genetics. 16, 11, 28 p., e1009187.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress

    Clausing, E., Mayer, A., Chanarat, S., Müller, B., Germann, S. M., Cramer, P., Lisby, Michael & Strässer, K., 31 Dec 2010, In: Journal of Biological Chemistry. 285, 53, p. 41665-41674 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicus

    Contursi, P., Cannio, R. & She, Q., 1 Sep 2010, In: Extremophiles. 14, 5, p. 453-63 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Transcriptional Analysis of the Genetic Element pSSVx: Differential and Temporal Regulation of Gene Expression Reveals Correlation between Transcription and Replication

    Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S., 2007, In: Journal of Bacteriology. 189, 17, p. 6339-50 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Molecular biology of fuselloviruses and their satellites

    Contursi, P., Fusco, S., Cannio, R. & She, Q., 2014, In: Extremophiles. 18, 3, p. 473-489 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family

    Contursi, P., D'Ambrosio, K., Pirone, L., Pedone, E., Aucelli, T., She, Q., De Simone, G. & Bartolucci, S., 2011, In: Biochemical Journal. 435, 1, p. 157-66 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Overexpression of putative NADH oxidases from the hyperthermophilic archaeons Sulfolobus solfataricus and Pyrococcus horikoshii

    Crane III, E. J., Ward, D. E., van der Oost, J., She, Q. & Garrett, Roger Antony, 1999, Flavins and Flavoproteins 1999 (Ghisla, S., Kroneck, P., Macheroux, P., and Sund, H. ed.). Berlin, p. 281-284 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  37. Published

    Regulation of Hed1 and Rad54 binding during maturation of the meiosis-specific presynaptic complex

    Crickard, J. B., Kaniecki, K., Kwon, Y., Sung, P., Lisby, Michael & Greene, E. C., 2018, In: EMBO Journal. 37, 7, 17 p., e98728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Four additional natural 7-deazaguanine derivatives in phages and how to make them

    Cui, L., Balamkundu, S., Liu, C. F., Ye, H., Hourihan, J., Rausch, A., Hauß, C., Nilsson, E., Hoetzinger, M., Holmfeldt, K., Zhang, W., Martinez-Alvarez, L., Peng, X., Tremblay, D., Moinau, S., Solonenko, N., Sullivan, M. B., Lee, Y. J., Mulholland, A., Weigele, P. R. & 3 others, de Crécy-Lagard, V., Dedon, P. C. & Hutinet, G., 2023, In: Nucleic Acids Research. 51, 17, p. 9214-9226 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments

    Cyriaque, V., Jacquiod, S. J. A., Riber, Leise, Abu Al-Soud, W., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: Journal of Hazardous Materials. 382, 10 p., 121173.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A site-specific endonuclease encoded by a typical archaeal intron.

    Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1993, In: Proceedings of the National Academy of Science of the United States of America. 90, 12, p. 5414-5417

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum

    Dalgaard, J. & Garrett, Roger Antony, 1992, In: Gene. 121, p. 103-110

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonucleose encoded by an archaeal intron

    Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1994, In: Journal of Biological Chemistry. Vol 269, p. 28885-28892

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Identification of the transporter for the M-factor mating pheromone in fission yeast

    Davey, W. J., Christensen, P. U., Nielsen, O. & Nielsen, Olaf, 1 May 1997, In: Biochemical Society Transactions. 25, 2, p. 224S

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Mutations in cyr1 and pat1 reveal pheromone-induced G1 arrest in the fission yeast Schizosaccharomyces pombe

    Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Aug 1994, In: Current Genetics. 26, 2, p. 105-12 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

    Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Unveiling cell surface and type IV secretion proteins responsible for archaeal rudivirus entry

    Deng, Ling, He, F., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Guo, Y. & Peng, Xu, 2014, In: Journal of Virology. 88, 17, p. 10264-10268 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus

    Deng, L., Zhu, H., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Extremophiles. 13, 4, p. 735-46 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus

    Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Vesicles in electric fields: some novel aspects of membrane behavior

    Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Development and Psychometric Evaluation of an Item Bank for Computerized Adaptive Testing of the EORTC Insomnia Dimension in Cancer Patients (EORTC CAT-SL)

    Dirven, L., Petersen, Morten, Aaronson, N. K., Chie, W., Conroy, T., Costantini, A., Hammerlid, E., Velikova, G., Verdonck-de Leeuw, I. M., Young, T. & Grønvold, Mogens, 6 Dec 2019, In: Applied Research in Quality of Life. 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Theoretical analysis of epigenetic cell memory by nucleosome modification

    Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    RSK is a principal effector of the RAS-ERK pathway for eliciting a coordinate promotile/invasive gene program and phenotype in epithelial cells

    Doehn, U., Hauge, C., Frank, S. R., Jensen, C. A. J., Duda, K., Nielsen, J. V., Cohen, M. S., Johansen, Jens Vilstrup, Winther, B. R., Lund, L. R., Winther, Ole, Taunton, J., Hansen, S. H. & Frödin, Morten, 2009, In: Molecular Cell. 35, 4, p. 511-22 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Current View of the Mechanisms Controlling the Transcription of the TOL Plasmid Aromatic Degradation Pathways

    Domínguez-Cuevas, P. & Marqués, S., 2019, Aerobic Utilization of Hydrocarbons, Oils, and Lipids. Rojo, F. (ed.). Springer, p. 573-594 (Handbook of Hydrocarbon and Lipid Microbiology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  54. Published

    Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases

    Dong, O. X., Ao, K., Xu, F., Johnson, K. C. M., Wu, Y., Li, L., Xia, S., Liu, Y., Huang, Y., Rodriguez, Eleazar, Chen, X., Chen, S., Zhang, Y., Petersen, Morten & Li, X., 2018, In: Nature Plants. 4, 9, p. 699-710

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids

    Dong, S., Liu, M., Liu, Y., Chen, F., Yang, T., Chen, L., Zhang, X., Guo, X., Fang, D., Li, L., Deng, T., Yao, Z., Lang, X., Gong, Y., Wu, E., Wang, Y., Shen, Y., Gong, X., Liu, Huan & Zhang, S., 2021, In: Horticulture Research. 8, 13 p., 38.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    A context-dependent and disordered ubiquitin-binding motif

    Dreier, Jesper Elmsted, Prestel, Andreas, Martins, J. M., Brøndum, S. S., Nielsen, Olaf, Garbers, Anna Engstrøm, Suga, H., Boomsma, Wouter, Rogers, Joseph Matthew, Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2022, In: Cellular and molecular life sciences : CMLS. 79, 9, 21 p., 484.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation.

    Düring, L., Thorsen, M., Petersen, D., Køster, B., Jensen, T. H. & Holmberg, Steen, 2012, In: P L o S One. 7, 9, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    The Role of Outer Membrane Proteins and Lipopolysaccharides for the Sensitivity of Escherichia coli to Antimicrobial Peptides

    Ebbensgaard, Anna Elisabeth, Mordhorst, H., Aarestrup, F. M. & Hansen, E. B., 2018, In: Frontiers in Microbiology. 9, p. 1-13 2153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Dissection of the antimicrobial and hemolytic activity of Cap18: generation of Cap18 derivatives with enhanced specificity

    Ebbensgaard, Anna Elisabeth, Mordhorst, H., Overgaard, M. T., Aarestrup, F. M. & Hansen, E. B., May 2018, In: PLOS ONE. 13, 5, p. 1-25 e0197742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    The Role of Efflux Pumps in the Transition from Low-Level to Clinical Antibiotic Resistance

    Ebbensgaard, Anna Elisabeth, Løbner-Olesen, Anders & Frimodt-Møller, Jakob, 2020, In: Antibiotics. 9, 12, 7 p., 855.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. E-pub ahead of print

    NBR1-mediated selective autophagy of ARF7 modulates root branching

    Ebstrup, E., Ansbøl, J., Paez-Garcia, A., Culp, H., Chevalier, J., Clemmens, P., Coll, N. S., Moreno-Risueno, M. A. & Rodriguez, Eleazar, 2024, (E-pub ahead of print) In: EMBO Reports.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Regulation of ARF7 in Arabidopsis thaliana during lateral root formation and pluripotency acquisition

    Ebstrup, E. N., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 102 p.

    Research output: Book/Report › Ph.D. thesis › Research

  63. Published

    Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae

    Eckert-Boulet, N., Regenberg, Birgitte & Nielsen, J., 1 Mar 2005, In: Current Genetics. 47, 3, p. 139-149 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Regulation of rDNA stability by sumoylation

    Eckert-Boulet, N. & Lisby, Michael, 2009, In: DNA Repair. 8, 4, p. 507-16 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp 1 p and Stp2p

    Eckert-Boulet, N., Nielsen, P. S., Friis, Carsten, Moreira dos Santos, M., Nielsen, J., Kielland-Brandt, M. C. & Regenberg, Birgitte, 1 Jun 2004, In: Yeast. 21, 8, p. 635-648 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Regulation of homologous recombination at telomeres in budding yeast

    Eckert-Boulet, N. & Lisby, Michael, 10 Sep 2010, In: F E B S Letters. 584, 17, p. 3696-3702 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Cell biology of homologous recombination in yeast

    Eckert-Boulet, N. V., Rothstein, R. & Lisby, Michael, 2011, DNA recombination: methods and protocols. Tsubouchi, H. (ed.). Springer, p. 523-536 14 p. (Methods in Molecular Biology, Vol. 745).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  68. Published

    Optimization of ordered plasmid assembly by gap repair in Saccharomyces cerevisiae

    Eckert-Boulet, N. V., Pedersen, M. L., Krogh, B. O. & Lisby, Michael, 2012, In: Yeast. 29, 8, p. 323-334 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Attachment sites of primary binding proteins L1, L2 and L23 on 23 S ribosomal RNA of Escherichia coli

    Egebjerg, J., Christiansen, Jan & Garrett, Roger Antony, 1991, In: Journal of Molecular Biology. 222, 2, p. 251-264

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Assessment of pheromone production and response in fission yeast by a halo test of induced sporulation

    Egel, Richard, Willer, M., Kjaerulff, S., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Oct 1994, In: Yeast. 10, 10, p. 1347-54 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Sexual differentiation in fission yeast

    Egel, Richard, Nielsen, O., Weilguny, D. & Nielsen, Olaf, 1 Nov 1990, In: Trends in Genetics. 6, 11, p. 369-73 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Origins and emergent evolution of life: the colloid microsphere hypothesis revisited

    Egel, Richard, 2014, In: Origins of Life and Evolution of Biospheres. 44, 2, p. 87-110 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    On the misgivings of anthropomorphic consensus polling in defining the complexity of life

    Egel, Richard, 2012, In: Journal of Biomolecular Structure & Dynamics. 29, 4, p. 615-616 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  74. Published

    Origins: It takes a well rooted trunk to bear a tree - reductionist models of divergent evolution and further aspects of reality

    Egel, Richard, 2020, Untangling Molecular Biodiversity: Explaining Unity and Diversity Principles of Organization with Molecular Structure and Evolutionary Genomics. Caetano-Anollés, G. (ed.). World Scientific, p. 223-282 60 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  75. Published

    Repression of a mating type cassette in the fission yeast by four DNA elements

    Ekwall, K., Nielsen, O., Ruusala, T. & Nielsen, Olaf, 1 Oct 1991, In: Yeast. 7, 7, p. 745-55 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Genetic analysis of Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 593-605 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Ethyl methanesulfonate mutagenesis in Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 643-646 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Setting up Schizosaccharomyces pombe crosses/matings

    Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 533-536 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Spore analysis and tetrad dissection of Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 541-544 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Selecting Schizosaccharomyces pombe diploids

    Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 537-540 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Mating-type determination in Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 641-642 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches

    Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, Anders, Bonch-Osmolovskaya, E. A., Peng, Xu & Kublanov, I. V., 2 Nov 2017, In: Frontiers in Microbiology. 8, 11 p., 2140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    RNAi and heterochromatin repress centromeric meiotic recombination

    Ellermeier, C., Higuchi, E. C., Phadnis, N., Holm, L., Geelhood, J. L., Thon, Genevieve & Smith, G. R., 11 May 2010, In: Proceedings of the National Academy of Sciences USA (PNAS). 107, 19, p. 8701-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Upregulated baseline plasma CCL19 and CCR7 cell-surface expression on monocytes in early rheumatoid arthritis normalized during treatment and CCL19 correlated with radiographic progression

    Ellingsen, T., Hansen, I., Thorsen, J., Møller, B. K., Tarp, U., Lottenburger, T., Andersen, L. S., Skjødt, H., Pedersen, J. K., Lauridsen, U. B., Svendsen, A., Lindegaard, H., Jacobsen, S., Østergaard, M., Vestergaard, A., Jurik, A. G., Junker, P., Christensen, A. F., Hetland, M. L., Hørslev-Petersen, K. & 1 others, Stengaard-Pedersen, K., 2014, In: Scandinavian Journal of Rheumatology. 43, 2, p. 91-100 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II

    Elmlund, H., Baraznenok, V., Lindahl, M., Samuelsen, C. O., Koeck, P. J. B., Holmberg, Steen, Hebert, H. & Gustafsson, C. M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 43, p. 15788-93 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    SMV1 virus-induced CRISPR spacer acquisition from the conjugative plasmid pMGB1 in Sulfolobus solfataricus P2

    Erdmann, S., Shah, S. A. & Garrett, Roger Antony, 2013, In: Biochemical Society Transactions. 41, 6, p. 1449-1458 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Studies of archaeal virus-host systems in thermal environments

    Erdmann, S., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 147 p.

    Research output: Book/Report › Ph.D. thesis › Research

  88. Published

    Archaeal viruses of the sulfolobales: isolation, infection, and CRISPR spacer acquisition

    Erdmann, S. & Garrett, Roger Antony, 2015, CRISPR: methods and protocols. Lundgren, M., Charpentier, E. & Fineran, P. C. (eds.). Springer, p. 223-232 10 p. (Methods in Molecular Biology, Vol. 1311).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  89. Published

    AAA ATPase p529 of Acidianus two-tailed virus ATV and host receptor recognition

    Erdmann, S., Scheele, U. & Garrett, Roger Antony, 2011, In: Virology. 421, 1, p. 61-66 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species

    Erdmann, S., Chen, B., Huang, X., Deng, Ling, Liu, C., Shah, S. A., Bauer, S. L. M., León Sobrino, C., Wang, H., Wei, Y., She, Q., Garrett, Roger Antony, Huang, L. & Lin, L., 2014, In: Extremophiles. 18, 1, p. 51-60 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus

    Erdmann, S., Le Moine Bauer, S. & Garrett, Roger Antony, 2014, In: Molecular Microbiology. 91, 5, p. 900-917 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms: [plus] Corrigendum

    Erdmann, S. & Garrett, Roger Antony, 2012, In: Molecular Microbiology. 85, 6, p. 1044-1056 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Bi-phasic effect of interferon (IFN)-alpha: IFN-alpha up- and down-regulates interleukin-4 signaling in human T cells

    Eriksen, K. W., Sommer, V. H., Woetmann, Anders , Rasmussen, A. B., Brender, C., Svejgaard, A., Skov, Søren, Geisler, Carsten & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 279, 1, p. 169-76 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe

    Esquivel-Chávez, A., Maki, T., Tsubouchi, H., Handa, T., Kimura, H., Haber, J. E., Thon, Genevieve & Iwasaki, H., 2022, In: Genes and Genetic Systems. 97, 3, p. 123-138 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Length-dependent processing of telomeres in the absence of telomerase

    Fallet, E., Jolivet, P., Soudet, J., Lisby, Michael, Gilson, E. & Teixeira, M. T., 2014, In: Nucleic Acids Research. 42, 6, p. 3648-3665 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Dissecting the genome of star fruit (Averrhoa carambola L.)

    Fan, Y., Sahu, S. K., Yang, T., Mu, W., Wei, J., Cheng, L., Yang, J., Mu, R., Liu, J., Zhao, J., Zhao, Y., Xu, X., Liu, X. & Liu, Huan, 2020, In: Horticulture Research. 7, 10 p., 94.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    The Clausena lansium (Wampee) genome reveal new insights into the carbazole alkaloids biosynthesis pathway

    Fan, Y., Sahu, S. K., Yang, T., Mu, W., Wei, J., Cheng, L., Yang, J., Liu, J., Zhao, Y., Lisby, Michael & Liu, Huan, 2021, In: Genomics. 113, 6, p. 3696-3704 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB

    Fazli, M., Rybtke, Morten Levin, Steiner, E., Weidel, E., Berthelsen, J., Groizeleau, J. D. D., Bin, W., Zhi, B. Z., Yaming, Z., Kaever, V., Givskov, Michael, Hartmann, R. W., Eberl, L. & Tolker-Nielsen, Tim, 2017, In: MicrobiologyOpen. 6, 4, 13 p., e00480.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Crystal structure of ATVORF273, a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus

    Felisberto-Rodrigues, C., Blangy, S., Goulet, A., Vestergaard, G. A., Cambillau, C., Garrett, Roger Antony & Ortiz-Lombardía, M., 2012, In: P L o S One. 7, 10, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Rad52 and Rad59 exhibit both overlapping and distinct functions

    Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37

    Research output: Contribution to journal › Journal article › Research › peer-review

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