Functional Genomics

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  1. Published

    C/EBPα is dispensable for the ontogeny of PD-1+ CD4+ memory T cells but restricts their expansion in an age-dependent manner

    Norrie, I. C., Ohlsson, E., Nielsen, Olaf, Hasemann, M. S. & Porse, Bo Torben, 2014, In: P L o S One. 9, 1, p. 1-9 9 p., e84728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    The role of C/EBPa in PD-1+ CD4+ T cells & modulation of RNR activity prolongs survival of mice with AML

    Norrie, I. C., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    Population structure of the African savannah elephant inferred from mitochondrial control region sequences and nuclear microsatellite loci

    Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2002, In: Heredity. 89, 2, p. 90-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Mitochondrial DNA diversity and population structure of a forest-dependent rodent, Praomys taitae (Rodentia: Muridae) Heller 1911, in the fragmented forest patches of Taita Hills, Kenya

    Nyakaana, S., Tumusiime, C., Oguge, N., Siegismund, Hans Redlef, Arctander, P. & Muwanika, V., 2008, In: South African Journal of Science. 104, 11/12, p. 499-504

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing

    Nygaard, S., Jacobsen, A., Lindow, M., Eriksen, J., Balslev, E., Flyger, H., Tolstrup, N., Moller, S., Krogh, Anders & Litman, T., 2009, In: B M C Medical Genomics. 2, 1, p. 35

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Investigating non-coding genome content using high-throughput sequencing data

    Nygaard, S., 2009, Biologisk Institut: Museum Tusculanum. 34 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development

    Næsted, H., Holm, A., Jenkins, T., Nielsen, H. B., Harris, C. A., Beale, M. H., Andersen, M., Mant, A., Scheller, H. V., Camara, B., Mattsson, O. & Mundy, J., 2004, In: Journal of Cell Science. 117, 20, p. 4807-18 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Nucleotide sequence and PCR-amplification of a polymorphic MboI site in human DNA marker D4S95 linked to the Huntington disease locus.

    Nørremølle, Anne, Sørensen, S. A. & Arctander, P., 1992, In: Clinical Genetics. 42, p. 210-211 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Nucleation and spreading of a heterochromatic domain in fission yeast

    Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Modulation of backbone flexibility for effective dissociation of antibacterial and hemolytic activity in cyclic peptides

    Oddo, A., Thomsen, T. T., Britt, H. M., Løbner-Olesen, Anders, Thulstrup, Peter Waaben, Sanderson, J. M. & Hansen, Paul Robert, 2016, In: ACS Medicinal Chemistry Letters. 7, 8, p. 741-745 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    An amphipathic undecapeptide with all D-amino acids shows promising activity against colistin-resistant strains of Acinetobacter baumannii and a dual mode of action

    Oddo, A., Thomsen, T. T., Kjelstrup, S., Gorey, C., Franzyk, Henrik, Frimodt-Møller, N., Løbner-Olesen, Anders & Hansen, Paul Robert, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 1, p. 592-599 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Dissecting the cell-killing mechanism of the topoisomerase II-targeting drug ICRF-193

    Østergaard, Vibe Hallundbæk, Knudsen, B. R. & Andersen, A. H., 2 Jul 2004, In: Journal of Biological Chemistry. 279, 27, p. 28100-28105 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Deubiquitination of FANCD2 Is Required for DNA Crosslink Repair

    Østergaard, Vibe Hallundbæk, Langevin, F., Kuiken, H. J., Pace, P., Niedzwiedz, W., Simpson, L. J., Ohzeki, M., Takata, M., Sale, J. E. & Patel, K. J., 14 Dec 2007, In: Molecular Cell. 28, 5, p. 798-809 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Hindering the strand passage reaction of human topoisomerase IIα without disturbing DNA cleavage, ATP hydrolysis, or the operation of the N-terminal clamp

    Østergaard, Vibe Hallundbæk, Giangiacomo, L., Bjergbaek, L., Knudsen, B. R. & Andersen, A. H., 2 Jul 2004, In: Journal of Biological Chemistry. 279, 27, p. 28093-28099 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The Transducer Domain Is Important for Clamp Operation in Human DNA Topoisomerase IIα

    Østergaard, Vibe Hallundbæk, Bjergbaek, L., Skouboe, C., Giangiacomo, L., Knudsen, B. R. & Andersen, A. H., 16 Jan 2004, In: Journal of Biological Chemistry. 279, 3, p. 1684-1691 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Myocardial perfusion defects and the left ventricular ejection fraction disclosed by scintigraphy in patients with primary hyperparathyroidism

    Ogard, C. G., Søndergaard, S. B., drb459, drb459, Jakobsen, H., Nielsen, S. L. & drb459, drb459, Jul 2005, In: World Journal of Surgery. 29, 7, p. 914-6 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Editing modifies the GABA(A) receptor subunit alpha3.

    Ohlson, J., Pedersen, Jakob Skou, Haussler, D. & Ohman, M., 2007, In: RNA: A publication of the RNA Society. 13, 5, p. 698-703 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication

    Oke, M., Kerou, M., Liu, H., Peng, Xu, Garrett, Roger Antony, Prangishvili, D., Naismith, J. H. & White, M. F., 2011, In: Journal of Virology. 85, 2, p. 925-31 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The Scottish Structural Proteomics Facility: targets, methods and outputs

    Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., Kerou, M., Weikart, N. D., Kadi, N., Sheikh, M. A., Schmelz, S., Dorward, M., Zawadzki, M., Cozens, C., Falconer, H., Powers, H., Overton, I. M., van Niekerk, C. A. J., Peng, X., Patel, P. & 11 others, Garrett, Roger Antony, Prangishvili, D., Botting, C. H., Coote, P. J., Dryden, D. T. F., Barton, G. J., Schwarz-Linek, U., Challis, G. L., Taylor, G. L., White, M. F. & Naismith, J. H., 1 Jun 2010, In: Journal of Structural and Functional Genomics. 11, 2, p. 167-80 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants

    Okello, J. B. A., Wittemyer, G., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 17, p. 3788-3799 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Population genetic structure of savannah elephants in Kenya: conservation and management implications

    Okello, J. B. A., Masembe, C., Rasmussen, H. B., Wittemyer, G., Omondi, P., Kahindi, O., Muwanika, V. B., Arctander, P., Douglas-Hamilton, I., Nyakaana, S. & Siegismund, Hans Redlef, 2008, In: Journal of Heredity. 99, 5, p. 443-452 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells

    Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Correlated transcriptional responses provide insights into the synergy mechanisms of the furazolidone, vancomycin, and sodium deoxycholate triple combination in escherichia coli

    Olivera, Catrina Diane Peralta, Cox, M. P., Rowlands, G. J. & Rakonjac, J., 2021, In: mSphere. 6, 5, 14 p., e00627-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs

    Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Generative probabilistic models extend the scope of inferential structure determination

    Olsson, S., Boomsma, Wouter, Frellsen, J., Bottaro, S., Harder, T. P., Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2011, In: Journal of Magnetic Resonance. 213, 1, p. 182-186 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  26. Published

    A putative flavin-containing mono-oxygenase as a marker for certain defense and cell death pathways

    Olszak, B., Malinovsky, F. G., Brodersen, P., Grell, M., Giese, H., Petersen, Morten & Mundy, J., 2006, In: Plant Science. 170, 3, p. 614-623

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

    Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  28. Published

    Structure and organ specificity of an anionic peroxidase from Arabidopsis thaliana cell suspension culture

    Ostergaard, L., Abelskov, A. K., Mattsson, O. & Welinder, K. G., 1996, In: FEBS Letters. 398, 2-3, p. 243-7 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.

    Ostergaard, L., Teilum, Kaare, Mirza, Osman Asghar, Mattsson, O., Petersen, M., Welinder, K. G., Mundy, J., Gajhede, Michael & Henriksen, A., 2000, In: Plant Molecular Biology. 44, 2, p. 231-43 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    An Arabidopsis callose synthase.

    Ostergaard, L., Petersen, Morten, Mattsson, O. & Mundy, J., 2002, In: Plant Molecular Biology. 49, 6, p. 559-566 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma

    Ou, Z., Lin, S., Qiu, J., Ding, W., Ren, P., Chen, D., Wang, J., Tong, Y., Wu, D., Chen, A., Deng, Y., Cheng, M., Peng, T., Lu, H., Yang, H., Wang, J., Jin, X., Ma, D., Xu, X., Wang, Y. & 2 others, Li, J. & Wu, P., 2022, In: Advanced Science. 9, 29, 20 p., 2203040.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Autoimmunity in Arabidopsis acd11 is mediated by epigenetic regulation of an immune receptor

    Palma, K., Thorgrimsen, S., Malinovsky, F. G., Fiil, Berthe Katrine, Nielsen, H. B., Brodersen, P., Hofius, D., Petersen, Morten & Mundy, J., 1 Jan 2010, In: P L o S Pathogens. 6, 10

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Distribution of mtDNA haplotypes in North Atlantic humpback whales: the influence of behaviour on popula­tion structure

    Palsbøll, P. J., Clapham, P. K., Mattila, D. K., Larsen, F., Sears, R., Siegismund, Hans Redlef & Arctander, P., 1995, In: Marine Ecology - Progress Series. 116

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Algorithms for Protein Structure Prediction

    Paluszewski, M., 2008, København: Department of Computer Science, University of Copenhagen. 196 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Protein Decoy Generation Using Branch and Bound with Efficient Bounding

    Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  36. Published

    Model quality assessment using distance constraints from alignments

    Paluszewski, M. & Karplus, K., 2008, In: Proteins - Structure Function and Bioinformatics.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Seawater-regulated genes for two-component systems and outer membrane proteins in myxococcus

    Pan, H. W., Liu, H., Liu, T., Li, C. Y., Li, Z. F., Cai, K., Zhang, C. Y., ZHANG, YONG, Hu, W., Wu, Z. H. & Li, Y. Z., Apr 2009, In: Journal of Bacteriology. 191, 7, p. 2102-2111 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system

    Pan, S., Li, Q., Deng, Ling, Jiang, S., Jin, X., Peng, N., Liang, Y., She, Q. & Li, Y., 2019, In: RNA Biology. 16, 9, p. 1166-1178

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Stable maintenance of the rudivirus SIRV3 in a carrier state in Sulfolobus islandicus despite activation of the CRISPR-Cas immune response by a second virus SMV1

    Papathanasiou, P., Erdmann, S., Leon-Sobrino, C., Sharma, K., Urlaub, H., Garrett, Roger Antony & Peng, Xu, 2019, In: RNA Biology. 16, 4, p. 557-565

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Bactericidal antibiotics increase hydroxyphenyl fluorescein signal by altering cell morphology

    Paulander, W., Wang, Y., Folkesson, A., Charbon, Godefroid, Løbner-Olesen, Anders & Ingmer, Hanne, 2014, In: P L o S One. 9, 3, 4 p., e92231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families

    Sander, Adam F. , Lavstsen, Thomas, Rask, T. S., Lisby, Michael, Salanti, Ali, Fordyce, S. L., Jespersen, Jakob Schmidt, Carter, R., Deitsch, K. W., Theander, Thor Grundtvig, Pedersen, A. G. & Arnot, D. E., 2014, In: Nucleic Acids Research. 42, 4, p. 2270-81 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Immunogenic and protective efficacy of recombinant protein GtxA-N against Gallibacterium anatis challenge in chickens

    Pedersen, I. J., Pors, S. E., Skjerning, R. B., Nielsen, Søren Saxmose & Bojesen, Anders Miki, Oct 2015, In: Avian pathology : journal of the W.V.P.A. 44, 5, p. 386-391 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    An evolutionary model for protein-coding regions with conserved RNA structure.

    Pedersen, Jakob Skou, Forsberg, R., Meyer, I. M. & Hein, J., 2004, In: Molecular Biology and Evolution. 21, 10, p. 1913-22 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A comparative method for finding and folding RNA secondary structures within protein-coding regions.

    Pedersen, Jakob Skou, Meyer, I. M., Forsberg, R., Simmonds, P. & Hein, J., 2004, In: Nucleic Acids Research. 32, 16, p. 4925-36 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Identification and classification of conserved RNA secondary structures in the human genome.

    Pedersen, Jakob Skou, Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W. & Haussler, D., 2006, In: PLoS Computational Biology. 2, 4, p. e33

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Gene finding with a hidden Markov model of genome structure and evolution.

    Pedersen, Jakob Skou & Hein, J., 2003, In: Bioinformatics. 19, 2, p. 219-27 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    The Functional Role of TopBP1 in DNA Maintenance at Mitosis

    Pedersen, R. T., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 167 p.

    Research output: Book/Report › Ph.D. thesis › Research

  48. Published

    TopBP1 is required at mitosis to reduce transmission of DNA damage to G1 daughter cells

    Pedersen, R. T., Kruse, Thomas, Nilsson, Jakob, Østergaard, Vibe Hallundbæk & Lisby, Michael, 2015, In: Journal of Cell Biology. 210, 4, p. 565-582 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    An upstream activation element exerting differential transcriptional activation on an archaeal promoter

    Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Genetic technologies for extremely thermophilic microorganisms of Sulfolobus, the only genetically tractable genus of crenarchaea

    Peng, N., Han, W., Li, Y., Liang, Y. & She, Q., 30 Apr 2017, In: Science China Life Sciences. 60, 4, p. 370-385 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Archaeal promoter architecture and mechanism of gene activation

    Peng, N., Ao, X., Liang, Y. X. & She, Q., 19 Jan 2011, In: Biochemical Society Transactions. 39, 1, p. 99-103 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus

    Peng, N., Deng, Ling, Mei, Y., Jiang, D., Hu, Y., Awayez, M., Liang, Y. & She, Q., 2012, In: Applied and Environmental Microbiology. 78, 16, p. 5630-5637 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Genetic Studies on CRISPR-Cas Functions in Invader Defense in Sulfolobus islandicus

    Peng, W., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  54. Published

    Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus

    Peng, W., Li, H., Hallstrøm, S., Peng, N., Liang, Y. X. & She, Q., 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference

    Peng, W., Feng, M., Feng, X., Liang, Y. X. & She, Q., 2015, In: Nucleic Acids Research. 43, 1, p. 406-417 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes

    Peng, Xu, Brügger, K., Shen, B., Chen, L., She, Q. & Garrett, Roger Antony, 2003, In: Journal of Bacteriology. 185, 8, p. 2410-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival

    Peng, Xu, 2008, In: Microbiology. 154, Pt 2, p. 383-91 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Archaeal viruses-novel, diverse and enigmatic

    Peng, Xu, Garrett, Roger Antony & She, Q., 2012, In: Science China Life Sciences. 55, 5, p. 422-433 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Anti-CRISPR Proteins in Archaea

    Peng, Xu, Mayo-Muñoz, D., Bhoobalan, Yuvaraj & Martinez Alvarez, Laura, 2020, In: Trends in Microbiology. 28, 11, p. 913-921 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  60. Published

    How to induce non-polarized cells of hepatic origin to express typical hepatocyte polarity: generation of new highly polarized cell models with developed and functional bile canaliculi

    Peng, Xu & Grosse B, Le Tiec B, Nicolas V, Delagebeaudeuf C, Bedda T, Decaens C, Cassio D, G. B. L. T. B. N. V. D. C. B. T. D. C. C. D., 2006, In: Cell and Tissue Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Genome of the Acidianus bottle-shaped virus and insights into the replication and packaging mechanisms

    Peng, Xu, Basta, T., Häring, M., Garrett, Roger Antony & Prangishvili, D., 2007, In: Virology. 364, 1, p. 237-43 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Identification and Investigation of Native Chromosomal Fragile Sites in the Avian Cell Line DT40: Chromosomal Fragile Sites and Genome Integrity

    Pentzold, C., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 150 p.

    Research output: Book/Report › Ph.D. thesis › Research

  63. Published

    FANCD2 binding identifies conserved fragile sites at large transcribed genes in avian cells

    Pentzold, C., Shah, S. A., Hansen, Niels Richard, Le Tallec, B., Seguin-Orlando, A., Debatisse, M., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2018, In: Nucleic Acids Research. 46, 3, p. 1280-1294 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Bird and plant companion species predict breeding and migrant habitats of the genus Oenanthe

    Pentzold, S., Pentzold, C. & Randler, C., 2011, In: Journal of Ecology and Field Biology. 34, 3, p. 287-293 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    New Insights into the Antimicrobial Action of Cinnamaldehyde towards Escherichia coli and Its Effects on Intestinal Colonization of Mice

    Pereira, W. A., Pereira, C. D. S., Assunção, R. G., da Silva, I. S. C., Rego, F. S., Alves, L. S. R., Santos, J. S., Nogueira, F. J. R., Zagmignan, A., Thomsen, T. T., Løbner-Olesen, Anders, Krogfelt, K. A., da Silva, L. C. N. & Abreu, A. G., 2021, In: Biomolecules. 11, 2, 14 p., 302.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Prediction of fat oxidation capacity using 1H-NMR and LC-MS lipid metabolomic data combined with phenotypic data

    Pers, T. H., Martin, F. P., Verdich, C., Holst, C., Johansen, Jens Vilstrup, Astrup, A., Polak, J., Martinez, J. A., Rezzi, S., Blaak, E. E., Saris, W. H. M., Kochhar, S., Macdonald, I. A., Sørensen, T. I. A. & Ramadan, Z., 2008, In: Chemometrics and Intelligent Laboratory Systems. 93, 1, p. 34-42 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Regulating retrotransposon activity through the use of alternative transcription start sites

    Persson, J., Steglich, B., Smialowska, A., Boyd, M., Lange, Jette Bornholdt, Andersson, Robin, Schurra, C., Arcangioli, B., Sandelin, Albin Gustav, Nielsen, Olaf & Ekwall, K., 2016, In: E M B O Reports. 17, 5, p. 753-768 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    F-actin distribution and function during sexual differentiation in Schizosaccharomyces pombe

    Petersen, J., Nielsen, O., Egel, Richard, Hagan, I. M. & Nielsen, Olaf, 1 Apr 1998, In: Journal of Cell Science. 111 ( Pt 7), p. 867-76 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    FH3, a domain found in formins, targets the fission yeast formin Fus1 to the projection tip during conjugation

    Petersen, J., Nielsen, O., Egel, Richard, Hagan, I. M. & Nielsen, Olaf, 1 Jun 1998, In: Journal of Cell Biology. 141, 5, p. 1217-28 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Characterization of fus1 of Schizosaccharomyces pombe: a developmentally controlled function needed for conjugation

    Petersen, J., Weilguny, D., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Jul 1995, In: Molecular and Cellular Biology. 15, 7, p. 3697-707 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function

    Petersen, K., Qiu, J., Lütje, J., Fiil, Berthe Katrine, Hansen, S., Mundy, J. & Petersen, Morten, 1 Jan 2010, In: P L o S One. 5, 12, p. e14364

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Downstream targets of WRKY33

    Petersen, K., Fiil, Berthe Katrine, Mundy, J. & Petersen, Morten, 2008, In: Plant Signalling & Behavior. 3, 11, p. 1033-1034

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.

    Petersen, Morten, Sep 2000, In: Plant Molecular Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Going through changes - the role of autophagy during reprogramming and differentiation

    Petersen, Morten, Ebstrup, E. & Rodriguez, Eleazar, 2024, In: Journal of Cell Science. 137, 4, 10 p., jcs261655.

    Research output: Contribution to journal › Review › Research › peer-review

  75. Published

    Coimmunoprecipitation (co-IP) of Nuclear Proteins and Chromatin Immunoprecipitation (ChIP) from Arabidopsis.

    Petersen, Morten, 2008, In: CSH protocols.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Arabidopsis MAP Kinase 4 Negatively Regulates Systemic Acquired Resistance

    Petersen, Morten, Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B. & Mundy, J. W., 2000, In: Gekkan Saibo. 103, 7, p. 1111-1120

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    MAP-kinaser--molekylaere transistorer i dyr og planter.

    Petersen, Morten, Brodersen, P. & Mundy, J., 2002, In: Ugeskrift for læger. 164, 24, p. 3184-8 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Human GLTP and mutant forms of ACD11 suppress cell death in the Arabidopsis acd11 mutant

    Petersen, N. H. T., McKinney, L. V., Pike, H., Hofius, D., Zakaria, A., Brodersen, P., Petersen, Morten, Brown, R. E. & Mundy, J., 2008, In: FEBS Journal. 275, 17, p. 4378-88 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Identification of proteins interacting with Arabidopsis ACD11.

    Petersen, N. H. T., Joensen, J., McKinney, L. V., Brodersen, P., Petersen, Morten, Hofius, D. & Mundy, J., 2009, In: Journal of Plant Physiology. 166, 6

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    ACD 11: Programmed Cell Death, Sphingolipids and Plant Defense

    Petersen, N. H. T., 2008, Department of Biology: Museum Tusculanum. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  81. Published

    Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature

    Petrauskas, V., Gylyte, J., Toleikis, Z., Cimmperman, P. & Matulis, D., 2013, In: European Biophysics Journal. 42, 5, p. 355-362 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway

    Petrosius, V., Benada, Jan, Nielsen, Olaf, Schoof, E. M. & Sørensen, Claus Storgaard, 2023, In: iScience. 26, 1, 24 p., 105806.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Conservation of the Type IV secretion system throughout Wolbachia evolution

    Pichon, S., Bouchon, D., Cordaux, R., Chen, L., Garrett, Roger Antony & Grève, P., 2009, In: Biochemical and Biophysical Research Communications. 385, 4, p. 557-62 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    The expression of one ankyrin pk2 allele of the WO prophage is correlated with the Wolbachia feminizing effect in isopods

    Pichon, S., Bouchon, D., Liu, C., Chen, L. & Garrett, Roger Antony, 2012, In: B M C Microbiology. 12, 55, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Live cell microscopy of DNA damage response in Saccharomyces cerevisiae

    Pinela da Silva, S. C., Gallina, I., Eckert-Boulet, N. V. & Lisby, Michael, 2012, DNA repair protocols. Springer Science+Business Media, p. 433-443 11 p. (Methods in Molecular Biology, Vol. 920).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  86. Published

    SUMOylation of Rad52-Rad59 synergistically change the outcome of mitotic recombination

    Pinela da Silva, S. C., Altmannova, V., Eckert-Boulet, N. V., Kolesar, P., Gallina, I., Hang, L., Chun, I., Arneric, M., Zhao, X., Buron, L. D., Mortensen, U. H., Krejci, L. & Lisby, Michael, 2016, In: D N A Repair. 42, p. 11-25 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Mte1 interacts with Mph1 and promotes crossover recombination and telomere maintenance

    Pinela da Silva, S. C., Altmannova, V., Luke-Glaser, S., Henriksen, P., Gallina, I., Yang, X., Choudhary, Chunaram, Luke, B., Krejci, L. & Lisby, Michael, 2016, In: Genes & Development. 30, 6, p. 700-717 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Regulation of Homologous Recombination by SUMOylation: SUMO, DNA Repair and New Insights into Telomere Maintenance

    Pinela da Silva, S. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 211 p.

    Research output: Book/Report › Ph.D. thesis › Research

  89. Published

    Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives

    Pinilla Redondo, Rafael, Cyriaque, V., Jacquiod, S., Sørensen, Søren Johannes & Riber, Leise, 2018, In: Plasmid. 99, p. 56-67

    Research output: Contribution to journal › Review › Research › peer-review

  90. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

    Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments

    Pinilla Redondo, Rafael, Riber, Leise & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Peptide-nucleotide antibiotic Microcin C is a potent inducer of stringent response and persistence in both sensitive and producing cells

    Piskunova, J., Maisonneuve, E., Germain-Maisonneuve, E., Gerdes, K. & Severinov, K., May 2017, In: Molecular Microbiology. 104, 3, p. 463-471 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    An exceptional case of historical outbreeding in African sable antelope populations

    Pitra, C., Hansen, Anders Johannes, Lieckfeldt, D. & Arctander, P., 2002, In: Molecular Ecology. 11, 7, p. 1197-208

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.

    Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Forces shaping the fastest evolving regions in the human genome.

    Pollard, K. S., Salama, S. R., King, B., Kern, A. D., Dreszer, T., Katzman, S., Siepel, A., Pedersen, Jakob Skou, Bejerano, G., Baertsch, R., Rosenbloom, K. R., Kent, J. & Haussler, D., 2006, In: PLoS Genetics. 2, 10, p. e168

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    An RNA gene expressed during cortical development evolved rapidly in humans.

    Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M., Coppens, S., Pedersen, Jakob Skou, Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P. & Haussler, D., 2006, In: Nature. 443, 7108, p. 167-72 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    The antibiotic micrococcin acts on protein L11 at the ribosomal GTPase centre.

    Porse, Bo Torben, Cundliffe, E. & Garrett, Roger Antony, 1999, In: Journal of Molecular Biology. 287, 1, p. 33-45 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

    Portales-Casamar, E., Thongjuea, S., Kwon, A. T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W. W. & Sandelin, Albin Gustav, 2009, In: Nucleic Acids Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    UBL/BAG-domain co-chaperones cause cellular stress upon overexpression through constitutive activation of Hsf1

    Poulsen, E. G., Kampmeyer, Caroline, Kriegenburg, F., Johansen, Jens Vilstrup, Hofmann, K., Holmberg, Christian & Hartmann-Petersen, Rasmus, Jan 2017, In: Cell Stress & Chaperones. 22, 1, p. 143-154 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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