- 2007
- Published
Editing modifies the GABA(A) receptor subunit alpha3.
Ohlson, J., Pedersen, Jakob Skou, Haussler, D. & Ohman, M., 2007, In: RNA: A publication of the RNA Society. 13, 5, p. 698-703 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium
Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, , 2007, In: Nature. 450, 7167, p. 203-18 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FOXP3+ regulatory T cells in cutaneous T-cell lymphomas: association with disease stage and survival
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Burton, C. M., Rossen, K., Skovgaard, G. L., Ryder, L. P. & Ralfkiaer, E., 2007, In: Leukemia. 21, 12, p. 2512-2518 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fission yeast goes synthetic.
Nielsen, Olaf, 2007, In: Nature Methods. 4, 10, p. 777-8 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four weeks one-leg training and high fat diet does not alter PPAR alpha protein or mRNA expression in human skeletal muscle
Helge, Jørn Wulff, Bentley, D., Schjerling, Peter, Willer, M., Gibala, M. J., Franch, J., Tapia-Laliena, M. A., Daugaard, J. R. & Andersen, J. L., 2007, In: European Journal of Applied Physiology. 101, 1, p. 105-114 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing.
Irimia, M., Rukov, J. L., Penny, D. & Roy, S. W., 2007, In: BMC Evolutionary Biology. 7, p. 188Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome of the Acidianus bottle-shaped virus and insights into the replication and packaging mechanisms
Peng, Xu, Basta, T., Häring, M., Garrett, Roger Antony & Prangishvili, D., 2007, In: Virology. 364, 1, p. 237-43 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide analysis of Rad52 foci reveals diverse mechanisms impacting recombination.
Alvaro, D., Lisby, Michael & Rothstein, R., 2007, In: PLoS Genetics. 3, 12, p. e228Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver.
Gao, H., Fält, S., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2007, In: Molecular Endocrinology. 22, 1, p. 10-22 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 36 others, , 2007, In: Nature. 447, 7146, p. 799-816 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
KBERG: KnowledgeBase for Estrogen Responsive Genes.
Tang, S., Zhang, Z., Tan, S. L., Tang, M. E., Kumar, A. P., Ramadoss, S. K. & Bajic, V. B., 2007, In: Nucleic Acids Research. 35, Database issue, p. D732-6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Sandelin, Albin Gustav, Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y. & Hume, D. A., 2007, In: Nature Reviews. Genetics. 8, 6, p. 424-36 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular composition of IMP1 ribonucleoprotein granules.
Jønson, L., Vikesaa, J., Krogh, Anders, Nielsen, Lars Kamp, Hansen, T. V., Borup, R., Johnsen, A. H., Christiansen, Jan & Nielsen, Finn Cilius, 2007, In: Molecular and Cellular Proteomics. 6, 5, p. 798-811 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonmalignant T cells stimulate growth of T-cell lymphoma cells in the presence of bacterial toxins
Woetmann, Anders , Lovato, P., Eriksen, K. W., Krejsgaard, T., Labuda, T., Zhang, Q., Mathiesen, A., Geisler, Carsten, Svejgaard, A., Wasik, M. A. & Ødum, Niels, 2007, In: Blood. 109, 8, p. 3325-32 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel bacterial sulfur oxygenase reductases from bioreactors treating gold-bearing concentrates
Chen, Z., Liu, Y., Wu, J., She, Q., Jiang, C. & Liu, S., 2007, In: Applied Microbiology and Biotechnology. 74, 3, p. 688-98 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)
Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population
Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.
Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability of Barley stripe mosaic virus-induced gene silencing in barley.
Bruun-Rasmussen, M., Madsen, C. T., Jessing, S. & Albrechtsen, M. T., 2007, In: Molecular Plant - Microbe Interactions. 20, 11, p. 1323-31 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M. & 4 others, , 2007, In: Genome Research. 17, 6, p. 852-64 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Slx5-Slx8 complex affects sumoylation of DNA repair proteins and negatively regulates recombination.
Burgess, R. C., Rahman, S., Lisby, Michael, Rothstein, R. & Zhao, X., 2007, In: Molecular and Cellular Biology. 27, 17, p. 6153-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Torres-Rosell, J., Sunjevaric, I., De Piccoli, G., Sacher, M., Eckert-Boulet, N., Reid, R., Jentsch, S., Rothstein, R., Aragón, L. & Lisby, Michael, 2007, In: Nature Cell Biology. 9, 8, p. 923-31 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The UCSC Genome Browser Database: 2008 update.
Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M., Thakkapallayil, A. & 5 others, , 2007, In: Nucleic Acids Research. 36, Database issue, p. D773-9Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C
Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Theoretical analysis of epigenetic cell memory by nucleosome modification
Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptional Analysis of the Genetic Element pSSVx: Differential and Temporal Regulation of Gene Expression Reveals Correlation between Transcription and Replication
Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S., 2007, In: Journal of Bacteriology. 189, 17, p. 6339-50 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using an alignment of fragment strings for comparing protein structures.
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cell biology of mitotic recombination in saccharomyces cerevisiae
Lisby, Michael & Rothstein, R., 2 May 2007, Molecular Genetics of Recombination. Aquilera, A. & Rothstein, R. (eds.). p. 335-362 28 p. (Topics in Current Genetics, Vol. 17).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
New locus important for Myxococcus social motility and development
Zhang, C. Y., Cai, K., Liu, H., ZHANG, YONG, Pan, H. W., Wang, B., Wu, Z. H., Hu, W. & Li, Y. Z., Nov 2007, In: Journal of Bacteriology. 189, 21, p. 7937-7941 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deubiquitination of FANCD2 Is Required for DNA Crosslink Repair
Østergaard, Vibe Hallundbæk, Langevin, F., Kuiken, H. J., Pace, P., Niedzwiedz, W., Simpson, L. J., Ohzeki, M., Takata, M., Sale, J. E. & Patel, K. J., 14 Dec 2007, In: Molecular Cell. 28, 5, p. 798-809 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
- Published
Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus
Qiu, J., Fiil, Berthe Katrine, Petersen, K., Nielsen, H. B., Botanga, C. J., Thorgrimsen, S. P., Palma, K., Suarez Rodriguez, M. C., Sandbech-Clausen, S., Lichota, J., Brodersen, P., Grasser, K. D., Mattsson, O., Glazebrook, J., Mundy, J. & Petersen, Morten, 2008, In: EMBO Journal. 27, 16, p. 2214-2221 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Age- and tactic-related paternity success in male African elephants
Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.
Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ACD 11: Programmed Cell Death, Sphingolipids and Plant Defense
Petersen, N. H. T., 2008, Department of Biology: Museum Tusculanum. 143 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Algorithms for Protein Structure Prediction
Paluszewski, M., 2008, København: Department of Computer Science, University of Copenhagen. 196 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
BayesMD: Flexible Biological Modeling for Motif Discovery
Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cerebral dysautoregulation and the risk of ischemic events in occlusive carotid artery disease
Reinhard, M., Gerds, Thomas Alexander, Grabiak, D., Zimmermann, P. R., Roth, M., Guschlbauer, B., Timmer, J., Czosnyka, M., Weiller, C. & Hetzel, A., 2008, In: Journal of Neurology. 255, 8, p. 1182-1189 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare
Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coimmunoprecipitation (co-IP) of Nuclear Proteins and Chromatin Immunoprecipitation (ChIP) from Arabidopsis.
Petersen, Morten, 2008, In: CSH protocols.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Compensatory role for Rad52 during recombinational repair in Ustilago maydis.
Kojic, M., Mao, N., Zhou, Q., Lisby, Michael & Holloman, W. K., 2008, In: Molecular Microbiology. 67, 5, p. 1156-68 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Competing to destroy: a fight between two RNA-degradation systems
Thon, Genevieve, 2008, In: Nature Structural and Molecular Biology. 15, 10, p. 1001-2 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis
Rosenstierne, M. W., Vinther, Jeppe, Mittler, G., Larsen, L., Mann, M. & Norrild, B., 2008, In: Anticancer Research. 28, 5A, p. 2553-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crenarchaeal Viruses: Morphotypes and Genomes,
Prangishvili, P., Basta, P. & Garrett, Roger Antony, 2008, Encyclopedia of Virology (Third Edition). Mahy, B. W. J. & van Regenmortel, M. H. V. (eds.). Elsevier, Vol. 3rd ed.. p. 587-595Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Differential regulation of the cellular response to DNA double-strand breaks in G1.
Barlow, J. H., Lisby, Michael & Rothstein, R., 2008, In: Molecular Cell. 30, 1, p. 73-85 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Downstream targets of WRKY33
Petersen, K., Fiil, Berthe Katrine, Mundy, J. & Petersen, Morten, 2008, In: Plant Signalling & Behavior. 3, 11, p. 1033-1034Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EGFR induces expression of IRF-1 via STAT1 and STAT3 activation leading to growth arrest of human cancer cells
Andersen, P., Pedersen, M. W., Woetmann, Anders , Villingshøj, M., Stockhausen, M., Ødum, Niels & Poulsen, H. S., 2008, In: International Journal of Cancer. 122, 2, p. 342-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants
Okello, J. B. A., Wittemyer, G., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 17, p. 3788-3799 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival
Peng, Xu, 2008, In: Microbiology. 154, Pt 2, p. 383-91 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FOXP3 positive regulatory T-cells in cutaneous T-cell lymphomas
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels & Ralfkiaer, E., 2008, In: Virchows Archiv. 452, Suppl. 1, p. S4-S4Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FOXP3 positive regulatory T-cells in cutaneous and systemic CD30 positive T-cell lymphoproliferations
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Hother, C., Henrik-Nielsen, R., Gniadecki, R. & Ralfkiaer, E., 2008, In: European Journal of Haematology. 80, 6, p. 483-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gamma c-signaling cytokines induce a regulatory T cell phenotype in malignant CD4+ T lymphocytes
Kasprzycka, M., Zhang, Q., Witkiewicz, A., Marzec, M., Potoczek, M., Liu, X., Wang, H. Y., Milone, M., Basu, S., Mauger, J., Choi, J. K., Abrams, J. T., Hou, J. S., Rook, A. H., Vonderheid, E., Woetmann, Anders , Ødum, Niels & Wasik, M. A., 2008, In: Journal of Immunology. 181, 4, p. 2506-12 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hidden layers of human small RNAs
Kawaji, H., Nakamura, M., Takahashi, Y., Sandelin, Albin Gustav, Katayama, S., Fukuda, S., Daub, C. O., Kai, C., Kawai, J., Yasuda, J., Carninci, P. & Hayashizaki, Y., 2008, In: BMC Genomics. 9, p. 157Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High variation and very low differentiation in wide ranging plains zebra (Equus quagga): insights from mtDNA and microsatellites
Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 12, p. 2812-2824 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Histone modifications: Cycling with chromosomal replication
Thon, Genevieve, 2008, In: Current Biology. 18, 9, p. 380-382 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Host-vector systems for hyperthermophilic archaeon Sulfolobus
She, Q., Deng, L., Zhu, H., Dreibrøl, M., Awayez, M. & Liang, Y. X., 2008, Microbes and the Environment: Perspective and Challenges. Liu, S-J. & Drake, H. L. (eds.). Beijing: Science Press, Beijing, p. 151-156 6 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Human GLTP and mutant forms of ACD11 suppress cell death in the Arabidopsis acd11 mutant
Petersen, N. H. T., McKinney, L. V., Pike, H., Hofius, D., Zakaria, A., Brodersen, P., Petersen, Morten, Brown, R. E. & Mundy, J., 2008, In: FEBS Journal. 275, 17, p. 4378-88 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of let-7-regulated oncofetal genes.
Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
Bryne, J. C., Valen, E., Tang, M. E., Marstrand, T., Winther, Ole, da Piedade, I., Krogh, Anders, Lenhard, B. & Sandelin, Albin Gustav, 2008, In: Nucleic Acids Research. 36, Database issue, p. D102-6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Malignant Tregs express low molecular splice forms of FOXP3 in Sézary syndrome
Krejsgaard, T., Gjerdrum, L. M., Ralfkiaer, E., Lauenborg, B., Eriksen, K. W., Mathiesen, A., Bovin, L. F., Gniadecki, R., Geisler, Carsten, Ryder, L. P., Zhang, Q., Wasik, M. A., Ødum, Niels & Woetmann, Anders , 2008, In: Leukemia. p. 2230-2239 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mitochondrial DNA diversity and population structure of a forest-dependent rodent, Praomys taitae (Rodentia: Muridae) Heller 1911, in the fragmented forest patches of Taita Hills, Kenya
Nyakaana, S., Tumusiime, C., Oguge, N., Siegismund, Hans Redlef, Arctander, P. & Muwanika, V., 2008, In: South African Journal of Science. 104, 11/12, p. 499-504Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Model quality assessment using distance constraints from alignments
Paluszewski, M. & Karplus, K., 2008, In: Proteins - Structure Function and Bioinformatics.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling promoter grammars with evolving hidden Markov models
Won, K., Sandelin, Albin Gustav, Marstrand, T. T. & Krogh, Anders, 2008, In: Bioinformatics. 24, 15, p. 1669-75 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mutation of miRNA target sequences during human evolution.
Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mutations in the RAM network confer resistance to the thiol oxidant 4,4'-dipyridyl disulfide
López-Mirabal, H. R., Winther, Jakob R., Thorsen, M. & Kielland-Brandt, M. C., 2008, In: Molecular Genetics and Genomics. 279, 6, p. 629-42 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
Norman, A., Hansen, Lars Hestbjerg, She, Q. & Sørensen, Søren Johannes, 2008, In: Plasmid. 60, 1, p. 59-74 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells.
Nielsen, Olaf & Løbner-Olesen, Anders, 2008, In: EMBO Reports. 9, 2, p. 151-156 5 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Origin of introns by 'intronization' of exonic sequences.
Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genetic structure of savannah elephants in Kenya: conservation and management implications
Okello, J. B. A., Masembe, C., Rasmussen, H. B., Wittemyer, G., Omondi, P., Kahindi, O., Muwanika, V. B., Arctander, P., Douglas-Hamilton, I., Nyakaana, S. & Siegismund, Hans Redlef, 2008, In: Journal of Heredity. 99, 5, p. 443-452 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of fat oxidation capacity using 1H-NMR and LC-MS lipid metabolomic data combined with phenotypic data
Pers, T. H., Martin, F. P., Verdich, C., Holst, C., Johansen, Jens Vilstrup, Astrup, A., Polak, J., Martinez, J. A., Rezzi, S., Blaak, E. E., Saris, W. H. M., Kochhar, S., Macdonald, I. A., Sørensen, T. I. A. & Ramadan, Z., 2008, In: Chemometrics and Intelligent Laboratory Systems. 93, 1, p. 34-42 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of regulatory elements
Sandelin, Albin Gustav, 2008, In: Methods in Molecular Biology. 453, p. 233-44 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein Decoy Generation Using Branch and Bound with Efficient Bounding
Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract
Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Reading Prokaryotic Genomes
Iversen, P., 2008, Biologisk Institut: Museum Tusculanum. 168 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Revised sequence of foxtail mosaic virus reveals a triple gene block structure similar to potato virus X
Bruun-Rasmussen, M., Madsen, C. T., Johansen, E. & Albrechtsen, M., 2008, In: Archives of Virology. 153, 1, p. 223-226Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rfam: updates to the RNA families database
Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, In: Nucleic Acids Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses
Vestergaard, G. A., Aramayo, R., Basta, T., Häring, M., Peng, Xu, Brügger, K., Chen, L., Rachel, R., Boisset, N., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Virology. 82, 1, p. 371-381 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system
Vestergaard, G. A., Shah, S. A., Bize, A., Reitberger, W., Reuter, M., Phan, H., Briegel, A., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Bacteriology. 190, 20, p. 6837-6845 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome landscape of ER{alpha}- and ER{beta}-binding DNA regions.
Liu, Y., Gao, H., Marstrand, T. T., Ström, A., Valen, E., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2008, In: Proceedings of the National Academy of Science of the United States of America.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Grant's gazelles
Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Conservation Genetics. 9, 3, p. 593-601Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways
Linder, T., Rasmussen, N., Samuelsen, C. O., Chatzidaki, E., Baraznenok, V., Beve, J., Henriksen, P., Gustafsson, C. M. & Holmberg, Steen, 2008, In: Nucleic Acids Research. 36, 8, p. 2489-504 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Viruses in acidic geothermal environments of the Kamchatka Peninsula
Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
WAR: webserver for aligning structural RNAs
Þórarinsson, E. & Lindgreen, S., 2008, In: Nucleic Acids Research. 36, Suppl. 2, p. W79-W84 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
57miRNA regulation during oncogene-induced senescence
Christoffersen, N. R., Frankel, Lisa, Klausen, M., Jacobsen, A., Krogh, Anders & Lund, Anders H., May 2008.Research output: Contribution to conference › Conference abstract for conference › Research
- 2009
- Published
A Flp-nick system to study repair of a single protein-bound nick in vivo
Nielsen, I., Bentsen, I. B., Lisby, Michael, Hansen, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2009, In: Nature Methods. 6, 10, p. 753-757 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA
Nielsen, Henrik, Einvik, C., Lentz, T. E., Hedegaard, M. M. & Johansen, S. D., 2009, In: RNA: A publication of the RNA Society. 15, 5, p. 958-67 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A two-step model for senescence triggered by a single critically short telomere
Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., 2009, In: Nature Cell Biology. 11, 8, p. 988-93 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the usage of blocking primers
Gigli, E., Rasmussen, M., Civit, S., Rosas, A., de la Rasilla, M., Fortea, J., Gilbert, M Thomas P, Willerslev, Eske & Lalueza-Fox, C., 2009, In: Journal of Archaeological Science. 36, p. 2676-2679Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An upstream activation element exerting differential transcriptional activation on an archaeal promoter
Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient DNA reveals late survival of mammoth and horse in interior Alaska
Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Autoimmunity in Plants: Guards with a License to Kill
Thorgrimsen, S. P., 2009, Copenhagen University. Department of Biology: Museum Tusculanum. 91 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Autophagic components contribute to hypersensitive cell death in Arabidopsis
Hofius, D., Schultz-Larsen, T., Joensen, J., Tsitsigiannis, D. I., Petersen, N. H. T., Mattsson, O., Jørgensen, L. B., Jones, J. D. G., Mundy, J. & Petersen, Morten, 2009, In: Cell. 137, 4, p. 773-83 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Choreography of recombination proteins during the DNA damage response
Lisby, Michael & Rothstein, R., 2009, In: DNA Repair. 8, 9, p. 1068-76 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational Analysis of MicroRNAs
Jacobsen, A. M. B., 2009, Museum Tusculanum.Research output: Book/Report › Ph.D. thesis › Research
- Published
Computational methods for exploration and prediction of regulatory elements in RNA Polymerase II promoters
Tang, M. E., 2009, Biologisk Institut: Museum Tusculanum. 127 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Conservation of the Type IV secretion system throughout Wolbachia evolution
Pichon, S., Bouchon, D., Cordaux, R., Chen, L., Garrett, Roger Antony & Grève, P., 2009, In: Biochemical and Biophysical Research Communications. 385, 4, p. 557-62 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices
da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA damage response to eroded telomeres
Lisby, Michael & Géli, V., 2009, In: Cell Cycle. 8, 22, p. 3617-8 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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PICH deficiency limits the progression of MYC-induced B-cell lymphoma
Research output: Contribution to journal › Journal article › Research › peer-review
Regulatory sequence-based discovery of anti-defense genes in archaeal viruses
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Bacterial chromosomes and their replication
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review