- Published
Basal level of ppGpp coordinates Escherichia coli cell heterogeneity and ampicillin resistance and persistence
Grucela, Paulina Katarzyna & Zhang, Yong, 2023, In: Microbial Cell. 10, 11, p. 248-260 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
BayesMD: Flexible Biological Modeling for Motif Discovery
Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Beringian paleoecology inferred from permafrost-preserved fungal DNA
Lydolph, M. C., Jacobsen, J., Arctander, P., Gilbert, M Thomas P, Gilichinsky, D. A., Hansen, Anders Johannes, Willerslev, Eske & Lange, L., 2005, In: Applied and Environmental Microbiology. 71, 2, p. 1012-7 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bi-phasic effect of interferon (IFN)-alpha: IFN-alpha up- and down-regulates interleukin-4 signaling in human T cells
Eriksen, K. W., Sommer, V. H., Woetmann, Anders , Rasmussen, A. B., Brender, C., Svejgaard, A., Skov, Søren, Geisler, Carsten & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 279, 1, p. 169-76 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biology, biodiversity and application potential of thermophilic viruses
Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Biosynthesis of 10 kDa and 7.5 kDa insulin-like growth factor II in a human rhabdomyosarcoma cell line
Nielsen, F. C., Haselbacher, G., Christiansen, Jan, Lake, M., Gammeltoft, S. & Grønborg, M., 1993, In: Molecular and Cellular Endocrinology. 93, 1, p. 87-95 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biotin starvation causes mitochondrial protein hyperacetylation and partial rescue by the SIRT3-like deacetylase Hst4p
Madsen, C. T., Sylvestersen, K. B., Young, C., Buch-Larsen, Sara Charlotte, Poulsen, J. W., Andersen, M. A., Palmqvist, E. A., Hey-Mogensen, M., Jensen, P. B., Treebak, Jonas Thue, Lisby, Michael & Nielsen, Michael Lund, 2015, In: Nature Communications. 6, 12 p., 7726.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bird and plant companion species predict breeding and migrant habitats of the genus Oenanthe
Pentzold, S., Pentzold, C. & Randler, C., 2011, In: Journal of Ecology and Field Biology. 34, 3, p. 287-293 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells
Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Break-induced ATR and Ddb1-Cul4(Cdt)² ubiquitin ligase-dependent nucleotide synthesis promotes homologous recombination repair in fission yeast
Moss, J., Tinline-Purvis, H., Walker, C. A., Folkes, L. K., Stratford, M. R., Hayles, J., Hoe, K., Kim, D., Park, H., Kearsey, S. E., Fleck, O., Holmberg, Christian, Nielsen, Olaf & Humphrey, T. C., 1 Dec 2010, In: Genes & Development. 24, 23, p. 2705-16 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Brh2-Dss1 interplay enables properly controlled recombination in Ustilago maydis.
Kojic, M., Zhou, Q., Lisby, Michael & Holloman, W. K., 2005, In: Molecular and Cellular Biology. 25, 7, p. 2547-57 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
C/EBPα is dispensable for the ontogeny of PD-1+ CD4+ memory T cells but restricts their expansion in an age-dependent manner
Norrie, I. C., Ohlsson, E., Nielsen, Olaf, Hasemann, M. S. & Porse, Bo Torben, 2014, In: P L o S One. 9, 1, p. 1-9 9 p., e84728.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family
Contursi, P., D'Ambrosio, K., Pirone, L., Pedone, E., Aucelli, T., She, Q., De Simone, G. & Bartolucci, S., 2011, In: Biochemical Journal. 435, 1, p. 157-66 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
COP9 signalosome: a provider of DNA building blocks
Nielsen, Olaf, 15 Jul 2003, In: Current Biology. 13, 14, p. R565-7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries
Cachera, P., Olsson, H., Coumou, H., Jensen, M. L., Sánchez, B., Strucko, T., Van den broek, M., Daran, J., Jensen, M., Sonnenschein, N., Lisby, Michael & Mortensen, U., 2023, In: Nucleic acids symposium series. 51, 17, 14 p., e91.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR History: Discovery, Characterization, and Prosperity
Han, W. & She, Q., 2017, CRISPR in Animals and Animal Models. Torres-Ruiz, R. & Rodriguez-Perales, S. (eds.). Elsevier, p. 1-21 20 p. (Progress in Molecular Biology and Translational Science, Vol. 152).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
CRISPR adaptive immune systems of Archaea
Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity
Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b
He, F., Vestergaard, G. A., Peng, W., She, Q. & Peng, Xu, 2017, In: Nucleic Acids Research. 45, 4, p. 1902-1913 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-based immune systems of the Sulfolobales: complexity and diversity
Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR/Cas and CRISPR/Cmr immune systems of archaea
Shah, S. A., Vestergaard, G. A. & Garrett, Roger Antony, 2012, Regulatory RNAs in prokaryotes. Springer, p. 163-181 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems
Shah, S. A. & Garrett, Roger Antony, 2011, In: Research in Microbiology. 162, 1, p. 27-38 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci
Alkhnbashi, O. S., Costa, F., Shah, S. A., Garrett, Roger Antony, Saunders, S. J. & Backofen, R., 2014, In: Bioinformatics. 30, 17, p. i489-i496 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRP Interacts Specifically With Sxy to Activate Transcription in Escherichia coli
Søndberg, E., Sinha, A. K., Gerdes, K. & Semsey, S., 2019, In: Frontiers in Microbiology. 10, 8 p., 2053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cancer cells become susceptible to natural killer cell killing after exposure to histone deacetylase inhibitors due to glycogen synthase kinase-3-dependent expression of MHC class I-related chain A and B
Skov, Søren, Pedersen, M. T., Andresen, Lars, Straten, P. T., Woetmann, Anders & Ødum, Niels, 2005, In: Cancer Research. 65, 23, p. 11136-45 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis
Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, Simon, Lorentzen, A. M., Roepstorff, P., Nielsen, K. L., Jorgensen, J., Hofius, D., Van Breusegem, F., Petersen, Morten & Andersen, S. U., 2013, In: Plant Cell. 25, 11, p. 4616-4626 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cdc14 phosphatase: warning, no delay allowed for chromosome segregation!
Machín, F., Quevedo Rodriguez, O., Ramos-Pérez, C. & García-Luis, J., 2016, In: Current Genetics. 62, 1, p. 7-13 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cdk phosphorylation of the Ste11 transcription factor constrains differentiation-specific transcription to G1.
Kjaerulff, S., Andersen, N. R., Borup, M. T. & Nielsen, Olaf, 2007, In: Genes & Development. 21, 3, p. 347-59 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ
Vischer, N. O. E., Verheul, J., Postma, M., van Saparoea, B. V. D. B., Galli, E., Natale, P., Gerdes, K., Luirink, J., Vollmer, W., Vicente, M. & den Blaauwen, T., 2015, In: Frontiers in Microbiology. 6, 18 p., 586.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell biology of homologous recombination in yeast
Eckert-Boulet, N. V., Rothstein, R. & Lisby, Michael, 2011, DNA recombination: methods and protocols. Tsubouchi, H. (ed.). Springer, p. 523-536 14 p. (Methods in Molecular Biology, Vol. 745).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Cell biology of mitotic recombination
Lisby, Michael & Rothstein, R., 2015, In: Cold Spring Harbor Perspectives in Biology. 7, 3, 23 p., a016535.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell cycle regulation of homologous recombination in Saccharomyces cerevisiae
Mathiasen, D. P. & Lisby, Michael, 2014, In: F E M S Microbiology Reviews. 38, 2, p. 172-184 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell cycle-regulated centers of DNA double-strand break repair
Lisby, Michael, Antúnez de Mayolo, A., Mortensen, U. H. & Rothstein, R., 10 Sep 2003, In: Cell Cycle. 2, 5, p. 479-83 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell differentiation by interaction of two HMG-box proteins: Mat1-Mc activates M cell-specific genes in S.pombe by recruiting the ubiquitous transcription factor Ste11 to weak binding sites
Kjaerulff, S., Dooijes, D., Clevers, H., Nielsen, O. & Nielsen, Olaf, 1 Jul 1997, In: E M B O Journal. 16, 13, p. 4021-33 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell growth of wall-free L-form bacteria is limited by oxidative damage
Kawai, Y., Mercier, R., Wu, L. J., Dominguez Cuevas, P., Oshima, T. & Errington, J., 2015, In: Current Biology. 25, 12, p. 1613-1618 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cerebral dysautoregulation and the risk of ischemic events in occlusive carotid artery disease
Reinhard, M., Gerds, Thomas Alexander, Grabiak, D., Zimmermann, P. R., Roth, M., Guschlbauer, B., Timmer, J., Czosnyka, M., Weiller, C. & Hetzel, A., 2008, In: Journal of Neurology. 255, 8, p. 1182-1189 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chaperone role for proteins p618 and p892 in the extracellular tail development of Acidianus two-tailed virus
Scheele, U., Erdmann, S., Ungewickell, E. J., Felisberto-Rodrigues, C., Ortiz-Lombardía, M. & Garrett, Roger Antony, 2011, In: Journal of Virology. 85, 10, p. 4812-4821 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterising the CRISPR immune system in Archaea using genome sequence analysis
Shah, S. A., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 219 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare
Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of a novel type III CRISPR-Cas effector provides new insights into the allosteric activation and suppression of the Cas10 DNase
Lin, Jinzhong, Feng, M., Zhang, H. & She, Q., 2020, In: Cell Discovery. 6, 16 p., 29.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of an archaeal virus replication initiator protein and first insights into virus assembly of spindle-shaped virus SMV1
Zhang, W., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 140 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Characterization of fus1 of Schizosaccharomyces pombe: a developmentally controlled function needed for conjugation
Petersen, J., Weilguny, D., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Jul 1995, In: Molecular and Cellular Biology. 15, 7, p. 3697-707 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of pMC11, a plasmid with dual origins of replication isolated from Lactobacillus casei MCJ and construction of shuttle vectors with each replicon
Chen, Z., Lin, J., Ma, C., Zhao, S., She, Q. & Liang, Y., 2014, In: Applied Microbiology and Biotechnology. 98, 13, p. 5977-5989 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of three genes in the dam-containing operon of Escherichia coli
Lyngstadaas, A., Løbner-Olesen, Anders & Boye, E., 10 Jun 1995, In: Molecular General Genetics. 247, 5, p. 546-54 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterizing leader sequences of CRISPR loci
Alkhnbashi, O., Shah, S. A., Garrett, Roger Antony, Saunders, S. J., Costa, F. & Backofen, R., 2016, In: Bioinformatics. 32, 17, p. i576-i585 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs
Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chitin and stress induced protein kinase activation
Kenchappa, C. S., Azevedo da Silva, R., Bressendorff, Simon, Stanimirovic, S., Olsen, J. V., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 185-194 10 p. (Methods in Molecular Biology, Vol. 1578).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Chitin-induced responses in the moss Physcomitrella patens
Bressendorff, Simon, Rasmussen, M. W., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 317-324 8 p. (Methods in Molecular Biology, Vol. 1578).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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PICH deficiency limits the progression of MYC-induced B-cell lymphoma
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