Functional Genomics

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  1. Published

    Novel overlapping coding sequences in Chlamydia trachomatis

    Jensen, K. T., Petersen, L., Falk, S., Iversen, P., Andersen, P., Theisen, Michael & Krogh, Anders, 2006, In: FEMS Microbiology Reviews. 265, 1, p. 106-17

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Novel thermostable amine transferases from hot spring metagenomes

    Ferrandi, E. E., Previdi, A., Bassanini, I., Riva, S., Peng, Xu & Monti, D., Jun 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 4963-4979 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs

    Islin, S. R., Menzel, P., Krogh, Anders, Young, M. & Peng, Xu, 2016, In: Environmental Microbiology. 18, 3, p. 863-874 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Nucleation and spreading of a heterochromatic domain in fission yeast

    Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators

    Moreira, José & Holmberg, Steen, 1998, In: E M B O Journal. 17, 20, p. 6028-38 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)

    Fiil, A., Lenk, I., Petersen, K., Jensen, C. S., Nielsen, K. K., Schejbel, B., Andersen, J. R. & Lübberstedt, T., 2011, In: Plant Science. 180, 2, p. 228-237 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Nucleotide sequence and PCR-amplification of a polymorphic MboI site in human DNA marker D4S95 linked to the Huntington disease locus.

    Nørremølle, Anne, Sørensen, S. A. & Arctander, P., 1992, In: Clinical Genetics. 42, p. 210-211 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux

    Norman, A., Hansen, Lars Hestbjerg, She, Q. & Sørensen, Søren Johannes, 2008, In: Plasmid. 60, 1, p. 59-74 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    On the misgivings of anthropomorphic consensus polling in defining the complexity of life

    Egel, Richard, 2012, In: Journal of Biomolecular Structure & Dynamics. 29, 4, p. 615-616 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  10. Published

    Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells.

    Nielsen, Olaf & Løbner-Olesen, Anders, 2008, In: EMBO Reports. 9, 2, p. 151-156 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  11. Published

    Optimization of ordered plasmid assembly by gap repair in Saccharomyces cerevisiae

    Eckert-Boulet, N. V., Pedersen, M. L., Krogh, B. O. & Lisby, Michael, 2012, In: Yeast. 29, 8, p. 323-334 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Order by disorder in plant signaling

    Kragelund, Birthe Brandt, Jensen, M. K. & Skriver, Karen, 2012, In: Trends in Plant Science. 17, 11, p. 625-632 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Organization and expression of genes in the genomic region surrounding the glutamine synthetase gene Gln1 from Lotus japonicus

    Thykjaer, T., Danielsen, D., She, Q. & Stougaard, J., 1997, In: Molecular Genetics and Genomics. 255, 6, p. 628-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Origin of introns by 'intronization' of exonic sequences.

    Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Origins: It takes a well rooted trunk to bear a tree - reductionist models of divergent evolution and further aspects of reality

    Egel, Richard, 2020, Untangling Molecular Biodiversity: Explaining Unity and Diversity Principles of Organization with Molecular Structure and Evolutionary Genomics. Caetano-Anollés, G. (ed.). World Scientific, p. 223-282 60 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  16. Published

    Origins and emergent evolution of life: the colloid microsphere hypothesis revisited

    Egel, Richard, 2014, In: Origins of Life and Evolution of Biospheres. 44, 2, p. 87-110 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Origins of the many NPY-family receptors in mammals

    Larhammar, D., Wraith, A., Berglund, M. M., Holmberg, Steen & Lundell, I., 2001, In: Peptides. 22, 3, p. 295-307 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Overexpression of ATG8/LC3 enhances wound-induced somatic reprogramming in Physcomitrium patens

    Kanne, J. V., Ishikawa, M., Bressendorff, Simon, Ansbøl, Jeppe, Hasebe, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Autophagy. 18, 6, p. 1463-1466 4 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  19. Published

    Overexpression of putative NADH oxidases from the hyperthermophilic archaeons Sulfolobus solfataricus and Pyrococcus horikoshii

    Crane III, E. J., Ward, D. E., van der Oost, J., She, Q. & Garrett, Roger Antony, 1999, Flavins and Flavoproteins 1999 (Ghisla, S., Kroneck, P., Macheroux, P., and Sund, H. ed.). Berlin, p. 281-284 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  20. Published

    Overproduction of DnaA protein stimulates initiation of chromosome and minichromosome replication in Escherichia coli

    Atlung, T., Løbner-Olesen, Anders & Hansen, F. G., Jan 1987, In: Molecular General Genetics. 206, 1, p. 51-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Oxidative DNA damage is instrumental in hyperreplication stress-induced inviability of Escherichia coli

    Charbon, Godefroid, Bjørn, L., Mendoza-Chamizo, B., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2014, In: Nucleic Acids Research. 42, 21, p. 13228-13241 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    PAT mRNA decapping factors are required for proper development in Arabidopsis

    Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, Morten, 2024, In: FEBS Letters. 598, 9, p. 1008-1021 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10

    Fino, C., Vestergaard, M., Ingmer, Hanne, Pierrel, F., Gerdes, K. & Harms, A., 2020, In: MicrobiologyOpen. 9, 8, 36 p., e1064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Peptide-nucleotide antibiotic Microcin C is a potent inducer of stringent response and persistence in both sensitive and producing cells

    Piskunova, J., Maisonneuve, E., Germain-Maisonneuve, E., Gerdes, K. & Severinov, K., May 2017, In: Molecular Microbiology. 104, 3, p. 463-471 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Persistent Organic Pollutant Exposure Leads to Insulin Resistance Syndrome

    Ruzzin, J., Petersen, R., Meugnier, E., Madsen, L., Lock, E., Lillefosse, H., Ma, T., Pesenti, S., Sonne, Si Brask, Marstrand, T. T., Malde, M. K., Du, Z., Chavey, C., Fajas, L., Lundebye, A., Brand, C. L., Vidal, H., Kristiansen, Karsten & Frøyland, L., 2010, In: Environmental Health Perspectives. 118, 4, p. 465-71

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation

    Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Phenylbutyrate inhibits homologous recombination induced by camptothecin and methyl methanesulfonate

    Kaiser, G. S., Germann, S. M., Westergaard, T. & Lisby, Michael, 2011, In: Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 713, 1-2, p. 64-75 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Pheromone communication in the fission yeast Schizosaccharomyces pombe

    Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Apr 1995, In: Seminars in Cell Biology. 6, 2, p. 95-104 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Phosphatidylserine stimulates ceramide 1-phosphate (C1P) intermembrane transfer by C1P transfer proteins

    Zhai, X., Gao, Y., Mishra, S. K., Simanshu, D. K., Boldyrev, I. A., Benson, L. M., Bergen III, H. R., Malinina, L., Mundy, J., Molotkovsky, J. G., Patel, D. J. & Brown, R. E., 10 Feb 2017, In: Journal of Biological Chemistry. 292, 6, p. 2531-2541 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Phylogenetic relationships amongst the hyperthermophilic archae determined from partial 23S rRNA gene sequences

    Kjems, J., Larsen, N., Dalgaard, J., Garrett, Roger Antony & Stetter, K. O., 1992, In: Systematic and Applied Microbiology. 15, p. 203-208

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida

    Liang, H., Wei, T., Xu, Y., Li, L., Sahu, S. K., Wang, H., Li, H., Fu, X., Zhang, G., Melkonian, M., Liu, X., Wang, S. & Liu, Huan, 2019, In: International Journal of Molecular Sciences (Online). 20, 12, 14 p., 3020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)

    Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Physical mapping and cloning of RAD56

    Mathiasen, D. P., Gallina, I., Germann, S. M., Hamou, W., Eléouët, M., Thodberg, S., Eckert-Boulet, N., Game, J. & Lisby, Michael, 25 Apr 2013, In: Gene. 519, 1, p. 182-186 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Plant autoimmunity - fresh insights into an old phenomenon

    Freh, M., Gao, Jinlan, Petersen, Morten & Panstruga, R., 2022, In: Plant Physiology. 188, 3, p. 1419-1434 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Plants flex their skeletons.

    Foster, R., Mattsson, O. & Mundy, J., 2003, In: Trends in Plant Science. 8, 5, p. 202-4 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Polypeptides comprising an ice-binding activity

    Ramløv, H., Wilkens, C. & Løbner-Olesen, Anders, 2009, Patent No. WO/2009/065415

    Research output: Patent

  38. Published

    Population genetic structure of savannah elephants in Kenya: conservation and management implications

    Okello, J. B. A., Masembe, C., Rasmussen, H. B., Wittemyer, G., Omondi, P., Kahindi, O., Muwanika, V. B., Arctander, P., Douglas-Hamilton, I., Nyakaana, S. & Siegismund, Hans Redlef, 2008, In: Journal of Heredity. 99, 5, p. 443-452 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population

    Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Population genetics of Kenyan impalas–consequences for conservation

    Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, Molecular Genetic Approaches  in Conser­vation. Smith, T. B. & Wayne, R. K. (eds.). Oxford: Oxford University Press, p. 399-412

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  41. Published

    Population structure of African buffalo inferred from mtDNA sequences and microsatellite loci: high variation but low differentiation

    Simonsen, Bo Thisted, Siegismund, Hans Redlef & Arctander, P., 1998, In: Molecular Ecology. 7, 2, p. 225-37 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Population structure of the African savannah elephant inferred from mitochondrial control region sequences and nuclear microsatellite loci

    Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2002, In: Heredity. 89, 2, p. 90-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Posttranscriptional crossregulation between Drosha and DGCR8

    Han, J., Pedersen, Jakob Skou, Kwon, S. C., Belair, C. D., Kim, Y., Yeom, K., Yang, W., Haussler, D., Blelloch, R. & Kim, V. N., 2009, In: Cell. 136, 1, p. 75-84 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array

    Makarova, K. S., Karamycheva, S., Shah, S. A., Vestergaard, G. A., Garrett, Roger Antony & Koonin, E. V., 2019, In: FEMS Microbiology Letters. 366, 7, 5 p., fnz079.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Prediction of fat oxidation capacity using 1H-NMR and LC-MS lipid metabolomic data combined with phenotypic data

    Pers, T. H., Martin, F. P., Verdich, C., Holst, C., Johansen, Jens Vilstrup, Astrup, A., Polak, J., Martinez, J. A., Rezzi, S., Blaak, E. E., Saris, W. H. M., Kochhar, S., Macdonald, I. A., Sørensen, T. I. A. & Ramadan, Z., 2008, In: Chemometrics and Intelligent Laboratory Systems. 93, 1, p. 34-42 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Prediction of regulatory elements

    Sandelin, Albin Gustav, 2008, In: Methods in Molecular Biology. 453, p. 233-44 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Pro-recombination role of Srs2 protein requires SUMO (small ubiquitin-like modifier) but is independent of PCNA (proliferating cell nuclear antigen) interaction

    Kolesar, P., Altmannova, V., Pinela da Silva, S. C., Lisby, Michael & Krejci, L., 2016, In: Journal of Biological Chemistry. 291, 14, p. 7594-7607 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Prophage-Related Gene VpaChn25_0724 Contributes to Cell Membrane Integrity and Growth of Vibrio parahaemolyticus CHN25

    Yang, L., Wang, Y., Yu, P., Ren, S., Zhu, Z., Jin, Y., Yan, J., Peng, Xu & Chen, L., 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 18 p., 595709.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Prophages and growth dynamics confound experimental results with antibiotic-tolerant persister cells

    Harms, A., Fino, C., Sørensen, Michael Askvad, Semsey, S. & Gerdes, K., 12 Dec 2017, In: mBio. 8, 6, 18 p., e01964-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Protein Decoy Generation Using Branch and Bound with Efficient Bounding

    Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  51. Published

    Protein Kinase Signalling in the Moss Physcomitrella patens

    Azevedo de Silva, R., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 109 p.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract

    Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  53. Published

    Protein dielectric constants determined from NMR chemical shift perturbations

    Kukic, P., Farrell, D., McIntosh, L. P., García-Moreno E., B., Jensen, K. S., Toleikis, Z., Teilum, Kaare & Nielsen, J. E., 2013, In: Journal of the American Chemical Society. 135, 45, p. 16968–16976 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Protein domain-dependent vesiculation of Lipoprotein A, a protein that is important in cell wall synthesis and fitness of the human respiratory pathogen Haemophilus influenzae

    Jalalvand, F., Su, Y., Manat, G., Chernobrovkin, A., Kadari, M., Jonsson, S., Janousková, M., Rutishauser, D., Semsey, S., Løbner-Olesen, Anders, Sandblad, L., Flärdh, K., Mengin-Lecreulx, D., Zubarev, R. A. & Riesbeck, K., 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 984955.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Protein phosphatase 2A (PP2A) regulates interleukin-4-mediated STAT6 signaling

    Woetmann, Anders , Brockdorff, J., Lovato, P., Nielsen, M., Leick, V., Rieneck, K., Svejgaard, A., Geisler, Carsten & Ødum, Niels, 2002, In: Journal of Biological Chemistry. 278, 5, p. 2787-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics

    Christensen, A. S., Linnet, T. E., Borg, M., Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2013, In: PLoS ONE. 8, 12, 10 p., e84123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum

    Dalgaard, J. & Garrett, Roger Antony, 1992, In: Gene. 121, p. 103-110

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Proteins involved in attack and defence in Zygomycete-aphid interactions

    Grell, M. N., Jensen, Annette Bruun & Lange, L., 2009.

    Research output: Contribution to conference › Conference abstract for conference › Research

  59. Published

    Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae

    Henriksen, P., Wagner, S. A., Weinert, B. T., Sharma, S., Bacinskaja, G., Rehman, M., Juffer, A. H., Walther, T. C., Lisby, Michael & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics. 11, 11, p. 1510-1522 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Protocol for Purification of Human ZGRF1 and Its Regulatory Function on RAD51-Mediated D-Loop Formation

    Lisby, Michael & Xue, X., 2020, In: STAR Protocols. 1, 2

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Protospacer recognition motifs: Mixed identities and functional diversity

    Shah, S. A., Erdmann, S., Mojica, F. J. M. & Garrett, Roger Antony, 2013, In: R N A Biology. 10, 5, p. 1-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonucleose encoded by an archaeal intron

    Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1994, In: Journal of Biological Chemistry. Vol 269, p. 28885-28892

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Quantitative analysis of promoter architecture and gene regulation

    Marstrand, T. T., 2009, Biologisk Institut: Museum Tusculanum. 33 p.

    Research output: Book/Report › Ph.D. thesis › Research

  64. Published

    Quantitative regulation of alternative splicing in evolution and development

    Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Quantitative sensing and signalling of single-stranded DNA during the DNA damage response

    Bantele, S. C. S., Lisby, Michael & Pfander, B., 2019, In: Nature Communications. 10, p. 1-12 944.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    RAD18-independent ubiquitination of proliferating-cell nuclear antigen in the avian cell line DT40

    Simpson, L. J., Ross, A. L., Szüts, D., Alviani, C. A., Østergaard, Vibe Hallundbæk, Patel, K. J. & Sale, J. E., 1 Sep 2006, In: EMBO Reports. 7, 9, p. 927-932 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    RNA-binding IMPs promote cell adhesion and invadopodia formation.

    Vikesaa, J., Hansen, T. V. O., Jønson, L., Borup, R., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2006, In: EMBO Journal. 25, 7, p. 1456-68 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    RNAi and heterochromatin repress centromeric meiotic recombination

    Ellermeier, C., Higuchi, E. C., Phadnis, N., Holm, L., Geelhood, J. L., Thon, Genevieve & Smith, G. R., 11 May 2010, In: Proceedings of the National Academy of Sciences USA (PNAS). 107, 19, p. 8701-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    RNAi screening for characterisation of ER-associated degradation pathways in mammalian cells

    Månsson, M. D. J., 2013, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  70. Published

    RNF8 and RNF168 but not HERC2 are required for DNA damage-induced ubiquitylation in chicken DT40 cells

    Østergaard, Vibe Hallundbæk, Pentzold, C., Pedersen, R. T., Iosif, S., Alpi, A., Bekker-Jensen, Simon Holst, Mailand, Niels & Lisby, Michael, 2012, In: D N A Repair. 11, 11, p. 892–905 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    RPA coordinates DNA end resection and prevents formation of DNA hairpins

    Chen, H., Lisby, Michael & Symington, L. S., 2013, In: Molecular Cell. 50, 4, p. 589-600 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    RSK is a principal effector of the RAS-ERK pathway for eliciting a coordinate promotile/invasive gene program and phenotype in epithelial cells

    Doehn, U., Hauge, C., Frank, S. R., Jensen, C. A. J., Duda, K., Nielsen, J. V., Cohen, M. S., Johansen, Jens Vilstrup, Winther, B. R., Lund, L. R., Winther, Ole, Taunton, J., Hansen, S. H. & Frödin, Morten, 2009, In: Molecular Cell. 35, 4, p. 511-22 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Rad10 exhibits lesion-dependent genetic requirements for recruitment to DNA double-strand breaks in Saccharomyces cerevisiae

    Moore, D. M., Karlin, J., González-Barrera, S., Mardiros, A., Lisby, Michael, Doughty, A., Gilley, J., Rothstein, R., Friedberg, E. C. & Fischhaber, P. L., 2009, In: Nucleic Acids Research. 37, 19, p. 6429-38 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Rad52

    Mortensen, U. H., Lisby, Michael & Rothstein, R., 2009, In: Current Biology. 19, 16, p. R676-7

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Rad52 SUMOylation affects the efficiency of the DNA repair: [Inkl. Corrigendum]

    Altmannova, V., Eckert-Boulet, N., Arneric, M., Kolesar, P., Chaloupkova, R., Damborsky, J., Sung, P., Zhao, X., Lisby, Michael & Krejci, L., 2010, In: Nucleic Acids Research. 38, 14, p. 4708-4721 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Rad52 SUMOylation functions as a molecular switch that determines a balance between the Rad5- and Rad59-dependent survivors

    Charifi, F., Churikov, D., Eckert-Boulet, N., Minguet, C., Jourquin, F., Hardy, J., Lisby, Michael, Simon, M. N. & Géli, V., 2021, In: iScience. 24, 3, 26 p., 102231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Rad52 and Rad59 exhibit both overlapping and distinct functions

    Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Rad52 and Rad59 exhibit both overlapping and distinct functions

    Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Rad52 forms DNA repair and recombination centers during S phase

    Lisby, Michael, Rothstein, R. & Mortensen, U. H., 17 Jul 2001, In: Proceedings of the National Academy of Sciences of the United States of America. 98, 15, p. 8276-8282 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.

    Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique

    Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Rdh54 stabilizes Rad51 at displacement loop intermediates to regulate genetic exchange between chromosomes

    Keymakh, M., Dau, J., Hu, J., Ferlez, B., Lisby, Michael & Brooks Crickard, J., 2022, In: PLOS Genetics. 18, 9, 26 p., e1010412.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli

    Charbon, Godefroid, Campion, C., Chan, S. H. J., Bjørn, L., Weimann, A., da Silva, L. C. N., Jensen, P. R. & Løbner-Olesen, Anders, 27 Jan 2017, In: PLoS Genetics. 13, 1, 26 p., e1006590.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Reading Prokaryotic Genomes

    Iversen, P., 2008, Biologisk Institut: Museum Tusculanum. 168 p.

    Research output: Book/Report › Ph.D. thesis › Research

  86. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

    Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  87. Published

    Receptor-like kinase complexes in plant innate immunity

    Greeff, M. C., Roux, M. E., Mundy, J. & Petersen, Morten, 2012, In: Frontiers in Plant Science. 3, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Recognition of extremophilic archaeal viruses by eukaryotic cells: a promising nanoplatform from the third domain of life

    Uldahl, K. B., Wu, L., Hall, A., Papathanasiou, P., Peng, Xu & Moghimi, S. M., 2016, In: Scientific Reports. 6, 37966.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Recombinational DNA repair is regulated by compartmentalization of DNA lesions at the nuclear pore complex

    Géli, V. & Lisby, Michael, 2015, In: BioEssays. 37, 12, p. 1287-1292 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Regulating retrotransposon activity through the use of alternative transcription start sites

    Persson, J., Steglich, B., Smialowska, A., Boyd, M., Lange, Jette Bornholdt, Andersson, Robin, Schurra, C., Arcangioli, B., Sandelin, Albin Gustav, Nielsen, Olaf & Ekwall, K., 2016, In: E M B O Reports. 17, 5, p. 753-768 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Regulation of ARF7 in Arabidopsis thaliana during lateral root formation and pluripotency acquisition

    Ebstrup, E. N., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 102 p.

    Research output: Book/Report › Ph.D. thesis › Research

  92. Published

    Regulation of BRCA2 by the Protein Phosphatase 2A

    Ambjørn, Sara Marie, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  93. Published

    Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB

    Fazli, M., Rybtke, Morten Levin, Steiner, E., Weidel, E., Berthelsen, J., Groizeleau, J. D. D., Bin, W., Zhi, B. Z., Yaming, Z., Kaever, V., Givskov, Michael, Hartmann, R. W., Eberl, L. & Tolker-Nielsen, Tim, 2017, In: MicrobiologyOpen. 6, 4, 13 p., e00480.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Regulation of DNA replication in Escherichia coli

    Boye, E., Lyngstadaas, A., Løbner-Olesen, Anders, Skarstad, K. & Wold, S., 1992, 43 Colloquium Mosbach. Springer Verlag, p. 15-26

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  95. Published

    Regulation of Hed1 and Rad54 binding during maturation of the meiosis-specific presynaptic complex

    Crickard, J. B., Kaniecki, K., Kwon, Y., Sung, P., Lisby, Michael & Greene, E. C., 2018, In: EMBO Journal. 37, 7, 17 p., e98728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Regulation of Homologous Recombination by SUMOylation: SUMO, DNA Repair and New Insights into Telomere Maintenance

    Pinela da Silva, S. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 211 p.

    Research output: Book/Report › Ph.D. thesis › Research

  97. Published

    Regulation of Ribonucleotide Reductase and Screening for Species-Specific Inhibitors in Fission Yeast

    Løvschal, K. V., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  98. Published

    Regulation of basal resistance by a powdery mildew-induced cysteine-rich receptor-like protein kinase in barley

    Rayapuram, C., Jensen, M. K., Maiser, F., Vikgren, E. L. J., Jensen, H. H., Rung, J. H., Gregersen, P. L., Schweizer, P., Collinge, David B. & Lyngkjær, M. F., 2012, In: Molecular Plant Pathology. 13, 2, p. 135-147 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Regulation of homologous recombination at telomeres in budding yeast

    Eckert-Boulet, N. & Lisby, Michael, 10 Sep 2010, In: F E B S Letters. 584, 17, p. 3696-3702 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Regulation of rDNA stability by sumoylation

    Eckert-Boulet, N. & Lisby, Michael, 2009, In: DNA Repair. 8, 4, p. 507-16 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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